PCR, Polymerase chain reaction

PCR,聚合酶链反应
  • 文章类型: Journal Article
    许多研究已经建立了炎症复合体内的基因变异与不同种族的牙周炎和心血管疾病发病率之间的联系。本研究探讨PYCARD基因多态性与牙周病和冠心病(CHD)易感性的关系及其与临床牙周指标的相关性。共有120名参与者报名参加,分为四组:30名健康对照(C),30例广泛性牙周炎(P),30例动脉粥样硬化性冠心病,但临床健康的牙周组织(AS-C),和30名同时患有动脉粥样硬化性CHD和广泛性牙周炎(AS-P)的患者。我们记录了人口统计数据,采集血液样本,测量牙周指数,包括菌斑指数,临床附着丧失,探查时出血,和口袋深度。使用常规聚合酶反应分析PYCARD基因的基因组变体。在P组中观察到T和G等位基因突变的显着患病率以及PYCARDC/T(rs8056505)和PYCARDA/G(rs372507365)中CT和TT基因型的分布较高,AS-P,和AS-C这些单核苷酸多态性(SNP)也与临床牙周炎指数的严重程度呈正相关。我们的研究结果表明,T和G等位基因的频率增加和CT的分布,TT,PYCARDSNP中的AG基因型与牙周病和CHD风险升高显著相关。这些SNP可能参与这些病症的发病机理。该研究加强了这些遗传标记作为伊拉克人口中两种疾病的危险因素的潜在作用。
    Numerous studies have established a link between gene variants within the inflammasome complex and the incidence of periodontitis and cardiovascular illness across various ethnic groups. This study investigated the association between PYCARD gene polymorphism and susceptibility to periodontal disease and coronary heart disease (CHD) and their correlation with clinical periodontal indices. A total of 120 participants were enrolled, categorized into four groups: 30 healthy controls (C), 30 patients with generalized periodontitis (P), 30 patients with atherosclerotic CHD but clinically healthy periodontium (AS-C), and 30 patients with both atherosclerotic CHD and generalized periodontitis (AS-P). We recorded demographic data, collected blood samples, and measured periodontal indices, including plaque index, clinical attachment loss, bleeding on probing, and pocket depth. The genomic variant of the PYCARD gene was analyzed using a conventional polymerase reaction. A significant prevalence of T and G allele mutations and a higher distribution of CT and TT genotypes in PYCARD C/T (rs8056505) and the AG genotype in PYCARD A/G (rs372507365) were observed in groups P, AS-P, and AS-C. These single nucleotide polymorphisms (SNPs) were also positively correlated with the severity of clinical periodontitis indices. Our findings suggest that the increased frequency of T and G alleles and the distribution of CT, TT, and AG genotypes in PYCARD SNPs are significantly associated with an elevated risk for periodontal disease and CHD. These SNPs may participate in the pathogenesis of these conditions. The study reinforces the potential role of these genetic markers as risk factors for both diseases in the Iraqi population.
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  • 文章类型: Journal Article
    已经批准了几种针对COVID-19的疫苗,其中5种已经在印度尼西亚使用。由于抗体水平的下降3至6个月后的第二剂量的CoronaVac,医护人员接受了第三次加强mRNA疫苗(mRNA-1273)以提高抗体水平.本研究旨在评估医护人员抗S-RBDIgG水平差异的危险因素。
    这项研究是一项回顾性队列研究,对576名以前没有SARS-CoV-2感染的医护人员进行了回顾性队列研究,他们在第二次剂量后6个月接受了2剂CoronaVac和第三剂mRNA-1273。第二次获得血样,6th,12th,第二剂CoronaVac疫苗给药后24周,在第20周使用mRNA-1273加强剂。用Elecsys抗SARS-CoV-2S免疫测定进行IgG抗体的定量测量。我们使用单变量和多变量线性回归分析确定了预测疫苗接种后抗体滴度的基线因素。
    这项研究包括576名32岁的参与者,72.05%女性,45.84%来自高危职业亚组。2日的中位抗体滴度水平,6th,12th,第二剂疫苗给药后第24周为40.99u/mL,42.01u/mL,54.78u/mL,和23,225u/mL。女性和年轻年龄组(20-29岁)的抗体水平最高。
    第三剂疫苗提高了SARS-CoV-2峰值IgG抗体的定量滴度,并消除了按性别划分的抗体滴度差异。
    UNASSIGNED: Several vaccines have been approved against COVID-19, and 5 have been used in Indonesia. Due to the decrease in antibody levels 3 to 6 months after the second dose of CoronaVac, healthcare workers received the third booster of mRNA vaccine (mRNA-1273) to increase the antibody level. This study aimed to evaluate the risk factors of anti-S-RBD IgG levels differences in healthcare workers.
    UNASSIGNED: This study is a retrospective cohort study of 576 healthcare workers without previous SARS-CoV-2 infection who received 2 doses of CoronaVac and the third dose of mRNA-1273 6 months after the second dose. Blood samples were obtained 2nd, 6th, 12th, and 24th weeks after the second dose of CoronaVac vaccine administration, with mRNA-1273 booster on week 20. Quantitative measurements of IgG antibodies were performed with Elecsys Anti-SARS-CoV-2 S immunoassay. We identify the baseline factors predicting post-vaccination antibody titers using univariate and multivariate linear regression analysis.
    UNASSIGNED: This study comprised 576 participants aged 32 years old, 72.05% female, and 45.84% from high-risk occupation subgroups. The median antibodies titer level on the 2nd, 6th, 12th, and 24th weeks after the second vaccine dose administration were 40.99 u/mL, 42.01 u/mL, 54.78 u/mL, and 23,225 u/mL. Antibody levels trended highest in female and younger age group (20-29 years old).
    UNASSIGNED: The third dose of vaccine increased the quantitative SARS-CoV-2 spike IgG antibody titers and eliminated differences in antibodies titer by gender.
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  • 文章类型: Journal Article
    胸部计算机断层扫描已广泛应用于COVID患者的评估。因此,出现了Ct值与胸部CT扫描或患者临床表现之间是否存在任何相关性的问题。我们想检验RT-PCR中的低Ct值(≤30)是否与高死亡率相关的假设。CT扫描结果,或伴有免疫抑制和肺部疾病等合并症。
    回顾了在贝鲁特美国大学医学中心诊断的371项COVID专利的影像学记录和RT-PCRCt值。
    我们发现胸部CT扫描的敏感性与RT-PCR相比,黄金标准,结果为74%(95%CI69-79%)。特异性,另一方面为33%(95%CI16-55%)。CT的阳性预测值为94%(95%CI91-97%),阴性预测值为8%(95%CI4-16%)。RT-PCR的低Ct值与较高的死亡率无关(p值=0.416).低Ct值与可疑CT扫描结果(COVID-19典型且不确定)之间没有显著正相关,p值为0.078。低Ct值与免疫抑制之间也没有显着关联(p值=0.511),或肺部疾病(p值=0.06)。CT扫描发现是否怀疑COVID-19感染,未显示与任何类型的呼吸道症状显着相关。肺部疾病史之间没有发现关联,COVID-19的免疫抑制和可疑CT扫描结果。
    只要这种流行病存在,核酸检测一直是并且仍然是世界范围内和我们社区COVID-19诊断的金标准,因为它具有优于CT扫描的诊断准确性和更高的灵敏度(94%对74%)。
    UNASSIGNED: Chest Computerized Tomography has been widely used in COVID patients\' assessment. Hence the question arises as to whether there is any correlation between the Ct value and findings on Chest CT scan or clinical presentation of the patient. We wanted to test the hypothesis of whether low Ct values (≤30) in RT-PCR were associated with a high mortality rate, CT scan findings, or with comorbidities such as immunosuppression and lung disease.
    UNASSIGNED: The radiographic records and RT-PCR Ct values of 371 COVID patents diagnosed at the American University of Beirut Medical Center were reviewed.
    UNASSIGNED: We found out that the sensitivity of chest CT scan compared to RT-PCR, the gold standard, turned out to be 74% (95% CI 69-79%). Specificity, on the other hand was 33% (95% CI 16-55%). The positive predictive value of CT was 94% (95% CI 91-97%) and the negative predictive value was 8% (95% CI 4-16%). low Ct values in RT-PCR were not associated with a higher mortality rate (p-value = 0.416). There was no significant positive association between low Ct value and suspicious CT scan findings (typical and indeterminate for COVID-19), with a p-value of 0.078. There was also no significant association between low Ct value and immunosuppression (p-value = 0.511), or lung disease (p-value =0.06). CT scan findings whether suspicious or not for COVID-19 infection, were not shown to be significantly associated with respiratory symptoms of any kind.No association was found between a history of lung disease, immunosuppression and suspicious CT scan findings for COVID-19.
    UNASSIGNED: As long as this pandemic exists, nucleic acid testing was and remains the gold standard of COVID-19 diagnosis worldwide and in our community as it has a superior diagnostic accuracy to CT scan and higher sensitivity (94% vs 74%).
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  • 文章类型: Journal Article
    在2005年和2010年,欧盟委员会(EC)发布了两个随后的“路线图”,以提供放宽在饲料中应用动物蛋白的禁令的选择。从那以后,粮食生产系统发生了很大变化,对可持续性和循环性的要求越来越高。到目前为止,第二个路线图中设想的许多放松措施已经实施,例如在猪饲料中使用来自家禽的加工动物蛋白(PAP),反之亦然。然而,一些立法变化,特别是关于昆虫,没有预见到。在这篇文章中,我们提出了增加和改善动物副产品使用的立法新愿景。讨论了关于禁止动物副产品作为饲料成分的六项现行立法原则:饲料禁令;养殖动物的分类;除非明确批准,否则禁止;批准的加工技术,动物副产品的分类,和监测方法。我们提出了新的指导原则和未来方向的建议,以及进一步放松的几个具体选择。我们认为,应该更好地认识到养殖动物在饮食偏好方面的生物学性质,如果安全,法律上的零容忍限制应该扩大,立法应该修订和简化。
    In 2005 and 2010, the European Commission (EC) published two subsequent \'Road Maps\' to provide options for relaxation of the bans on the application of animal proteins in feed. Since then, the food production system has changed considerably and demands for more sustainability and circularity are growing louder. Many relaxations envisioned in the second Road Map have by now been implemented, such as the use of processed animal proteins (PAPs) from poultry in pig feed and vice versa. However, some legislative changes, in particular concerning insects, had not been foreseen. In this article, we present a new vision on legislation for increased and improved use of animal by-products. Six current legislative principles are discussed for the bans on animal by-products as feed ingredients: feed bans; categorization of farmed animals; prohibition unless explicitly approved; approved processing techniques, the categorization of animal by-products, and monitoring methods. We provide a proposal for new guiding principles and future directions, and several concrete options for further relaxations. We argue that biological nature of farmed animals in terms of dietary preferences should be better recognised, that legal zero-tolerance limits should be expanded if safe, and that legislation should be revised and simplified.
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  • 文章类型: Journal Article
    未经证实:牙周炎是牙周设备的炎症,导致结缔组织附着和牙齿脱落的破坏。红色复合细菌可能导致疾病开始。牙周炎中的细菌感染导致远处器官的低度慢性感染和炎症。值得注意的是,衰老会影响免疫反应。
    UNASSIGNED:本研究的目的是分析衰老对口腔卫生和炎症状况的影响。此外,评价龈下菌斑口腔卫生状况与红色复合细菌载量的相关性。
    未经评估:在这项横断面研究中,我们检查了20名成人和20名老年牙周炎患者。记录临床参数包括口腔卫生学简化指数(OHI-S)和乳头状出血指数(PBI)。从探测深度为5-7mm的牙齿收集龈下菌斑,并用逆转录聚合酶链反应(RT-PCR)分析红色复合细菌定量。进行统计分析,分别。
    未经评估:两组的口腔卫生状况都很差,高OHI-S和PBI反映。红色复合细菌的数量(P.牙龈,T.Denticola,与成年组相比,老年组的连翘T.forsythia)明显更高。OHI-S与红色复合菌呈显著的强线性关系(r<1,p<0.05)。只有牙龈卟啉单胞菌与PBI值有很强的线性关系,具有统计学意义。(r<1,p<0.05)。牙龈卟啉单胞菌载量显著高于凹凸棒菌和连翘菌载量,它与成人和老年人组的口腔卫生不良以及老年人组的PBI相关。
    未经评估:衰老会影响红色复杂细菌负荷和口腔卫生状况,但不是炎症。这些发现有助于开发针对老年人牙周炎细菌方面的新型治疗策略。
    UNASSIGNED: Periodontitis is an inflammation of the periodontal apparatus leads to destruction of connective tissue attachment and tooth loss. Red complex bacteria may contribute to disease initiation. Bacterial infection in periodontitis leads to a low-grade chronic infection and inflammation in distant organs. Notably, aging can affect the immune response.
    UNASSIGNED: The aim of this study was to analyze the effect of aging on oral hygiene and inflammation condition. Moreover, to evaluate the correlation between the oral hygiene condition and red complex bacterial load in subgingival plaque.
    UNASSIGNED: In this cross-sectional study, we examined 20 adult and 20 elderly subjects with periodontitis. Clinical parameters included Oral Hygiene Index Simplified (OHI-S) and Papillary Bleeding Index (PBI) were recorded. Subgingival plaque was collected from the tooth with a probing depth of 5-7 mm and analyzed with a reverse transcription polymerase chain reaction (RT-PCR) for red complex bacteria quantification. Statistical analysis was performed, respectively.
    UNASSIGNED: Both groups had poor oral hygiene conditions, reflected by high OHI-S and PBI. The quantity of red complex bacteria (P. gingivalis, T. denticola, T. forsythia) in the elderly group was significantly higher in comparison to the adult group. There was significant strong linear relationship between OHI-S and red complex bacteria (r < 1, p < 0.05). Only P. gingivalis bacteria with PBI values had a strong linear relationship and statistically significant. (r < 1, p < 0.05). P. gingivalis load was significantly higher than T. denticola and T. forsythia load, and it correlated with poor oral hygiene in the adult and elderly groups and with PBI in the elderly group.
    UNASSIGNED: Aging affects to the red complex bacterial load and oral hygiene condition, but not the inflammation. These findings contribute to the development of novel treatment strategies focusing on bacterial aspect for periodontitis in the elderly.
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  • 文章类型: Journal Article
    屠宰马匹的肺泡棘球蚴病仍然是一个公共卫生问题。本研究旨在建立一种针对多房棘球蚴线粒体NADH脱氢酶亚基5(Nad5)基因的重组酶聚合酶扩增(RPA)方法,用于快速检测马泡型包虫病。根据组织病理学检查和Nad5靶向PCR评估了从每匹马(n=36)获得的36个肝实体结节,然后进行RPA测定。开发的RPA检测结果与Nad5PCR的结果一致为94.4%,Cohen的kappa系数值在统计学上为0.89,表明高度一致。此外,使用质粒样品的RPA检测比PCR检测灵敏度高一百倍.因此,这些结果表明,本研究中开发的RPA检测方法的性能与常规PCR检测相同.
    Alveolar echinococcosis in slaughtered horses remains a public health issue. This study aimed to develop a Recombinase polymerase amplification (RPA) assay targeting the mitochondrial NADH dehydrogenase subunit 5 (Nad5) gene of Echinococcus multilocularis for the rapid detection of equine alveolar echinococcosis. Thirty-six hepatic solid nodules obtained from each horse (n = 36) were evaluated based on histopathological examination and Nad5-targeted PCR and then submitted to the RPA assay. The results of the developed RPA assay were 94.4% consistent with those of Nad5 PCR and Cohen\'s kappa coefficient value was 0.89 statistically, indicating high agreement. In addition, the RPA assay using the plasmid samples was one hundredfold more sensitive than PCR testing. Consequently, these results suggest that the performance of the RPA assay developed in this study is equal to that of conventional PCR testing.
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  • 文章类型: Case Reports
    未经批准:结核病(TB)仍然是发展中国家的常见疾病,其中中耳结核病是罕见的。此外,中耳结核的早期诊断和后续治疗相对困难.所以,有必要报告此案例以供参考和进一步讨论。
    未经评估:我们报告了1例耐多药结核性中耳炎。结核病中耳炎在结核病中很少见;耐多药结核病中耳炎更为罕见。本文分析了可能的原因,成像,分子生物学,病理学,耐多药结核性中耳炎的临床表现。
    未经证实:PCR和DNA分子生物学技术被推荐用于耐多药结核病性中耳炎的早期诊断。早期,有效的抗结核治疗是耐多药结核性中耳炎患者进一步康复的保证。
    UNASSIGNED: Tuberculosis (TB) continues to be a common disease in developing countries, among which middle ear TB is rare. Furthermore, it is relatively difficult to make an early diagnosis and provide follow-up treatment for middle ear TB. So, it is necessary to report this case for reference and further discussion.
    UNASSIGNED: We reported 1 case of multidrug-resistant tuberculosis otitis media. TB otitis media is rare in tuberculosis; multidrug-resistant TB otitis media is even more rare. Our paper analyzes the possible causes, imaging, molecular biology, pathology, and clinical manifestations of multidrug-resistant TB otitis media.
    UNASSIGNED: PCR and DNA molecular biology techniques are highly recommended for the early diagnosis of multidrug-resistant TB otitis media. Early, effective anti-tuberculosis treatment is the guarantee for further recovery for patients with multidrug-resistant TB otitis media.
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  • 文章类型: Journal Article
    血管平滑肌细胞的表型转换是腹主动脉瘤(AAA)病理的核心过程。我们发现敲低TCF7L1(转录因子7样1),转录因子TCF/LEF(T细胞因子/淋巴增强因子)家族的成员,抑制血管平滑肌细胞分化。这项研究暗示了潜在的干预措施,以维持正常的,分化的平滑肌细胞状态,从而消除了AAA的发病机制。此外,我们的研究为TCF7L1作为AAA生物标志物的潜在用途提供了见解.
    Phenotypic switching of vascular smooth muscle cells is a central process in abdominal aortic aneurysm (AAA) pathology. We found that knockdown TCF7L1 (transcription factor 7-like 1), a member of the TCF/LEF (T cell factor/lymphoid enhancer factor) family of transcription factors, inhibits vascular smooth muscle cell differentiation. This study hints at potential interventions to maintain a normal, differentiated smooth muscle cell state, thereby eliminating the pathogenesis of AAA. In addition, our study provides insights into the potential use of TCF7L1 as a biomarker for AAA.
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  • 文章类型: Journal Article
    鱼糜生产过程中产生的废水中富含鱼肉中的水溶性蛋白质(WSP)。这项研究调查了使用原代巨噬细胞(MΦ)和动物摄入的鱼类WSP的抗炎作用和机制。用消化的WSP(d-WSP,500µg/mL),有或没有脂多糖(LPS)刺激。对于摄入研究,在施用LPS(4mg/kg体重)后,给雄性ICR小鼠(5周龄)喂食4%WSP14天。d-WSP降低了LPS受体Tlr4的表达。此外,d-WSP显著抑制炎性细胞因子的分泌,吞噬能力,以及LPS刺激的巨噬细胞的Myd88和Il1b表达。此外,摄入4%WSP不仅减少了LPS诱导的血液中IL-1β的分泌,而且减少了肝脏中Myd88和Il1b的表达。因此,鱼WSP降低了TLR4-MyD88通路相关基因在MΦ和肝脏中的表达,从而抑制炎症。
    Water-soluble protein (WSP) from fish meat is abundant in the waste effluent generated via the surimi manufacturing process. This study investigated the anti-inflammatory effects and mechanisms of fish WSP using primary macrophages (MΦ) and animal ingestion. MΦ were treated with digested-WSP (d-WSP, 500 µg/mL) with or without lipopolysaccharide (LPS) stimulation. For the ingestion study, male ICR mice (5 weeks old) were fed 4% WSP for 14 days following LPS administration (4 mg/kg body weight). d-WSP decreased the expression of Tlr4, an LPS receptor. Additionally, d-WSP significantly suppressed the secretion of inflammatory cytokines, phagocytic ability, and Myd88 and Il1b expressions of LPS-stimulated macrophages. Furthermore, the ingestion of 4% WSP attenuated not only LPS-induced IL-1β secretion in the blood but also Myd88 and Il1b expressions in the liver. Thus, fish WSP decreases the expressions of the genes involved in the TLR4-MyD88 pathway in MΦ and the liver, thereby suppressing inflammation.
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  • 文章类型: Journal Article
    未经证实:在大多数流行地区,无症状疟原虫携带者构成了大多数疟疾感染个体。这些无症状感染的个体中有一部分携带配子细胞,疟疾寄生虫的传播阶段,维持人类对蚊子的传播。很少有研究检查无症状学童的配子细胞血症,这些学童可能构成重要的传播库。我们评估了无症状疟疾儿童抗疟治疗前配子细胞血症的患病率,并监测了治疗后配子细胞的清除情况。
    UNASSIGNED:通过显微镜对274名小学生进行了恶性疟原虫寄生虫血症筛查。在直接观察下,用双氢青蒿素-哌喹(DP)治疗了一百五十五(155)名寄生虫阳性儿童。在治疗前七天通过显微镜确定配子细胞携带,治疗前0天,以及治疗开始后第7、14和21天。
    UNASSIGNED:筛选(第-7天)和登记(第0天)时显微镜可检测的配子细胞的患病率分别为9%(25/274)和13.6%(21/155)。DP治疗后,配子细胞携带下降到4%(6/135),3%(5/135)和6%(10/151)分别在第7、14和21天。无性寄生虫持续存在于少数接受治疗的儿童中,在第7天导致显微镜下可检测到的寄生虫(9%,12/135),14(4%,5/135)和21(7%,10/151)。配子细胞携带与参与者的年龄(p=0.05)和无性寄生虫密度(p=0.08)呈负相关。在变量分析中,治疗后7天或以上持续性配子细胞血症与治疗后第7天的无性寄生虫血症(P=0.027)和治疗当天配子细胞的存在(P<0.001)显著相关.
    UNASSIGNED:虽然DP对临床疟疾提供了极好的治愈率和较长的预防半衰期,我们的研究结果表明,无症状感染治疗后,在治疗后的前3周内,无性寄生虫和配子细胞可能在少数个体中持续存在。这表明DP可能不适合用于非洲消除疟疾的大规模药物管理策略。
    UNASSIGNED: Asymptomatic Plasmodium carriers form the majority of malaria-infected individuals in most endemic areas. A proportion of these asymptomatically infected individuals carry gametocytes, the transmissible stages of malaria parasites, that sustain human to mosquito transmission. Few studies examine gametocytaemia in asymptomatic school children who may form an important reservoir for transmission. We assessed the prevalence of gametocytaemia before antimalarial treatment and monitored clearance of gametocytes after treatment in asymptomatic malaria children.
    UNASSIGNED: A total of 274 primary school children were screened for P. falciparum parasitaemia by microscopy. One hundred and fifty-five (155) parasite positive children were treated under direct observation with dihydroartemisinin-piperaquine (DP). Gametocyte carriage was determined by microscopy seven days prior to treatment, day 0 before treatment, and on days 7, 14 and 21 post initiation of treatment.
    UNASSIGNED: The prevalence of microscopically-detectable gametocytes at screening (day -7) and enrolment (day 0) were 9% (25/274) and 13.6% (21/155) respectively. Following DP treatment, gametocyte carriage dropped to 4% (6/135), 3% (5/135) and 6% (10/151) on days 7, 14 and 21 respectively. Asexual parasites persisted in a minority of treated children, resulting in microscopically detectable parasites on days 7 (9%, 12/135), 14 (4%, 5/135) and 21 (7%, 10/151). Gametocyte carriage was inversely correlated with the age of the participants (p = 0.05) and asexual parasite density (p = 0.08). In a variate analysis, persistent gametocytaemia 7 or more days after treatment was significantly associated with post-treatment asexual parasitaemia at day 7 (P = 0.027) and presence of gametocytes on the day of treatment (P < 0.001).
    UNASSIGNED: Though DP provides both excellent cure rates for clinical malaria and a long prophylactic half-life, our findings suggest that after treatment of asymptomatic infections, both asexual parasites and gametocytes may persist in a minority of individuals during the first 3 weeks after treatment. This indicates DP may be unsuitable for use in mass drug administration strategies towards malaria elimination in Africa.
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