Organisms, Genetically Modified

有机体,转基因
  • 文章类型: Journal Article
    埃斯瓦蒂尼王国是《生物多样性公约》和《卡塔赫纳生物安全议定书》的缔约国。作为派对,埃斯瓦蒂尼通过《生物安全法》将这些协议归化,2012年的规定,以提供安全处理,转让,以及在该国使用改性活生物体(LMOs)。该法规定了用于密闭田间试验的改性活生物体,商业发布,进口,export,和过境,和食物,饲料,和处理。在向主管当局提出任何申请之前,将为潜在申请人提供指导。该框架还提供了对合成生物学和基因组编辑等新兴技术的调节。改性活生物体监管框架旨在为该国预防性使用现代生物技术及其产品提供有利环境,以保护生物多样性和人类健康。
    The Kingdom of Eswatini is a Party to the Convention on Biological Diversity and to the Cartagena Protocol on Biosafety. As Party, Eswatini has domesticated these agreements by passing the Biosafety Act, of 2012 to provide for the safe handling, transfer, and use of living modified organisms (LMOs) in the country. The Act regulates living modified organisms to be used for confined field trials, commercial release, import, export, and transit, and for food, feed, and processing. Guidance is provided for prospective applicants before any application is made to the Competent Authority. This framework also provides for the regulation of emerging technologies such as synthetic biology and genome editing. The regulatory framework for living modified organisms aims to provide an enabling environment for the precautionary use of modern biotechnology and its products in the country in order to safeguard biological diversity and human health.
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  • 文章类型: Journal Article
    重组基于病毒的基因治疗产品,例如掺入腺相关病毒(AAV)的那些,属于转基因生物(GMOs)类别。在开始任何临床试验之前,欧盟(EU)国家和日本必须获得环境风险评估(ERA)批准才能使用转基因生物。据报道,由于ERA的监管程序和文件准备时间较长,这两个地区含GMO产品的开发遇到了一些监管障碍。
    在本文中,我们比较分析了欧盟和日本对基于AAV的重组医药产品的ERA文件要求,以突出未来可能尝试融合的背景下的差异.此外,我们分析了非临床和临床数据需求,这是欧盟和日本ERA审查的关键组成部分。最后,我们比较了遏制措施,以最大程度地减少转基因生物在欧盟和日本的环境中的传播。
    根据我们的比较分析,我们提出了规范和简化欧盟和日本转基因生物ERA法规申请材料和程序的若干政策建议,以及实现全球监管趋同的长期时间表。
    UNASSIGNED: Recombinant viral-based gene therapy products, such as those incorporating adeno-associated viruses (AAVs), fall under the category of genetically modified organisms (GMOs). The European Union (EU) countries and Japan must obtain environmental risk assessment (ERA) approval for the use of GMOs before starting any clinical trials. It has been reported that the development of GMO-containing products in these two regions encounters several regulatory obstacles due to the longer regulatory procedures and document preparation for ERA.
    UNASSIGNED: In this article, we comparatively analyzed the ERA document requirements in the EU and Japan for AAV-based recombinant medicinal products to highlight the differences in the context of potential future attempts of convergence. Additionally, we analyzed non-clinical and clinical shedding data requirements, which are key components of ERA reviews in the EU and Japan. Lastly, we compared the containment measures to minimize the spread of GMOs in the environment in the EU and Japan.
    UNASSIGNED: Based on our comparative analysis, we present several policy recommendations of standardizing and simplifying the application materials and procedures for the ERA regulations on GMOs in the EU and Japan in the mid-, and long-term timeframe to achieve global regulatory convergence.
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  • 文章类型: Journal Article
    寄生原生生物的功能基因和蛋白质特征通常受到其遗传可操作性的限制。尽管针对少数原生寄生虫开发了CRISPR-Cas9衍生或启发的方法,这些生物的总体遗传可操作性仍然有限。肠道寄生虫蓝氏贾第鞭毛虫就是这样一个物种,加上缺乏可靠的选择标记的额外挑战。为了解决这个限制,我们测试了在贾第虫中使用Nourseothricin作为有效选择剂的可行性。这里,我们报道,轴突生长的WB贾第鞭毛虫细胞对Nourserothricin敏感,并且在转基因寄生虫中工程化表达来自rochei链霉菌的链霉素乙酰转移酶(SAT-1)基因赋予了对该抗生素的抗性.此外,我们确定表达SAT-1的寄生虫对新霉素和嘌呤霉素都不具有交叉抗性,广泛用于选择转基因寄生虫。因此,我们表明,Nourseathricin可以与新霉素和嘌呤霉素连续联合使用,以选择双重转染事件.这项工作增加了可靠的选择剂和贾第虫遗传操作标记的数量,扩展这个具有全球医学重要性的物种的有限分子工具箱。
    Functional gene and protein characterizations in parasitic protists are often limited by their genetic tractability. Despite the development of CRISPR-Cas9-derived or inspired approaches for a handful of protist parasites, the overall genetic tractability of these organisms remains limited. The intestinal parasite Giardia lamblia is one such species, with the added challenge of a paucity of reliable selection markers. To address this limitation, we tested the feasibility of using Nourseothricin as an effective selection agent in Giardia. Here, we report that axenically-grown WB Giardia cells are sensitive to Nourseothricin and that engineering expression of the streptothricin acetyltransferase (SAT-1) gene from Streptomyces rochei in transgenic parasites confers resistance to this antibiotic. Furthermore, we determine that SAT-1-expressing parasites are cross-resistant neither to Neomycin nor Puromycin, which are widely used to select for transgenic parasites. Consequently, we show that Nourseothricin can be used in sequential combination with both Neomycin and Puromycin to select for dual transfection events. This work increases the number of reliable selection agents and markers for Giardia genetic manipulation, expanding the limited molecular toolbox for this species of global medical importance.
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  • 文章类型: Journal Article
    1型Andersen-Tawil综合征是一种罕见的遗传性疾病,由编码强内向整流K通道Kir2.1的基因突变引起。通道结构中的细胞外Cys(半胱氨酸)122至Cys154二硫键对于正确折叠至关重要,但与膜上的正确通道功能无关。我们通过重组整体Kir2.1通道结构并破坏其开放状态,评估了Cys122至Cys154二硫键处的人类突变是否会导致Kir2.1通道功能障碍和心律失常。
    我们在ATS1家族中鉴定了Kir2.1功能缺失突变(c.366A>T;p.Cys122Tyr)。为了研究其病理生理意义,我们建立了一个表达Kir2.1C122Y变异体的AAV9介导的心脏特异性小鼠模型.我们采用了多学科的方法,整合膜片钳和心内刺激,分子生物学技术,分子动力学,和生物发光共振能量转移实验。
    Kir2.1C122Y小鼠概括了ATS1的心电图特征,与性别无关,包括校正的QT延长,传导缺陷,和增加心律失常的易感性。分离的Kir2.1C122Y心肌细胞显示出显着降低的向内整流K(IK1)和向内Na(INa)电流密度,而与正常运输无关。分子动力学预测,在2000-ns模拟中,C122Y突变会引起构象变化,特征在于Kir2.1和磷脂酰肌醇4,5-二磷酸之间的氢键损失比野生型(WT)更大。因此,磷脂酰肌醇4,5-二磷酸结合袋不稳定,导致与WT相比更低的电导状态。因此,从内到外的贴片夹紧,C122Y突变显著减弱了Kir2.1对增加磷脂酰肌醇4,5-二磷酸浓度的敏感性。此外,Kir2.1C122Y突变导致通道体降解,证明Kir2.1和NaV1.5蛋白的时间不稳定性。
    三维Kir2.1通道结构中的细胞外Cys122-to-Cys154二硫键对于通道功能至关重要。我们证明,破坏胞外域中的二硫键会破坏磷脂酰肌醇4,5-二磷酸依赖性调节,导致通道功能障碍和Kir2.1能量稳定性缺陷。该突变还改变了NaV1.5通道的功能表达,并最终导致1型Andersen-Tawil综合征的传导障碍和危及生命的心律失常。
    UNASSIGNED: Andersen-Tawil syndrome type 1 is a rare heritable disease caused by mutations in the gene coding the strong inwardly rectifying K+ channel Kir2.1. The extracellular Cys (cysteine)122-to-Cys154 disulfide bond in the channel structure is crucial for proper folding but has not been associated with correct channel function at the membrane. We evaluated whether a human mutation at the Cys122-to-Cys154 disulfide bridge leads to Kir2.1 channel dysfunction and arrhythmias by reorganizing the overall Kir2.1 channel structure and destabilizing its open state.
    UNASSIGNED: We identified a Kir2.1 loss-of-function mutation (c.366 A>T; p.Cys122Tyr) in an ATS1 family. To investigate its pathophysiological implications, we generated an AAV9-mediated cardiac-specific mouse model expressing the Kir2.1C122Y variant. We employed a multidisciplinary approach, integrating patch clamping and intracardiac stimulation, molecular biology techniques, molecular dynamics, and bioluminescence resonance energy transfer experiments.
    UNASSIGNED: Kir2.1C122Y mice recapitulated the ECG features of ATS1 independently of sex, including corrected QT prolongation, conduction defects, and increased arrhythmia susceptibility. Isolated Kir2.1C122Y cardiomyocytes showed significantly reduced inwardly rectifier K+ (IK1) and inward Na+ (INa) current densities independently of normal trafficking. Molecular dynamics predicted that the C122Y mutation provoked a conformational change over the 2000-ns simulation, characterized by a greater loss of hydrogen bonds between Kir2.1 and phosphatidylinositol 4,5-bisphosphate than wild type (WT). Therefore, the phosphatidylinositol 4,5-bisphosphate-binding pocket was destabilized, resulting in a lower conductance state compared with WT. Accordingly, on inside-out patch clamping, the C122Y mutation significantly blunted Kir2.1 sensitivity to increasing phosphatidylinositol 4,5-bisphosphate concentrations. In addition, the Kir2.1C122Y mutation resulted in channelosome degradation, demonstrating temporal instability of both Kir2.1 and NaV1.5 proteins.
    UNASSIGNED: The extracellular Cys122-to-Cys154 disulfide bond in the tridimensional Kir2.1 channel structure is essential for the channel function. We demonstrate that breaking disulfide bonds in the extracellular domain disrupts phosphatidylinositol 4,5-bisphosphate-dependent regulation, leading to channel dysfunction and defects in Kir2.1 energetic stability. The mutation also alters functional expression of the NaV1.5 channel and ultimately leads to conduction disturbances and life-threatening arrhythmia characteristic of Andersen-Tawil syndrome type 1.
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  • 文章类型: Journal Article
    在依赖合成DNA序列的生物经济中,确保其真实性的能力至关重要。DNA水印可以编码短序列中的识别数据,并且可以与纠错和加密协议相结合,以确保序列对错误具有鲁棒性并安全地进行通信。新的数字签名技术允许公开验证序列尚未被修改,并且可以包含足够的信息以供合成DNA进行自我记录。在将这些技术从细菌转化为更复杂的转基因生物(GMOs)时,必须特别考虑,以便对这些产品进行公开验证。我们认为,应该广泛实施这些方法来维护作者身份,增加可追溯性,并检测合成DNA的未经授权的使用。
    In a bioeconomy that relies on synthetic DNA sequences, the ability to ensure their authenticity is critical. DNA watermarks can encode identifying data in short sequences and can be combined with error correction and encryption protocols to ensure that sequences are robust to errors and securely communicated. New digital signature techniques allow for public verification that a sequence has not been modified and can contain sufficient information for synthetic DNA to be self-documenting. In translating these techniques from bacteria to more complex genetically modified organisms (GMOs), special considerations must be made to allow for public verification of these products. We argue that these approaches should be widely implemented to assert authorship, increase the traceability, and detect the unauthorized use of synthetic DNA.
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  • 文章类型: Journal Article
    合成生物学在解决资源利用中的关键问题方面有着巨大的希望,环境修复,和人类保健。然而,缺乏在开放环境应用中采用工程微生物的综合安全措施。遗传编码的生物遏制系统可以解决这个问题。这里,我们描述了基于必需蛋白质的条件稳定性的系统。我们使用了通过添加雌二醇(ERdd)稳定的去稳定结构域degron。我们用ERdd标记了775个必需基因,并筛选了具有雌二醇依赖性生长的菌株。三个基因,发现SPC110、DIS3和RRP46是特别合适的靶标。在存在雌二醇的情况下,各个菌株均未显示出生长缺陷,而在不存在雌二醇的情况下,则显示出强的生长抑制作用。SPC110-ERdd提供了最严格的防护,逃逸频率<5×10-7。去除其C端结构域将逸出频率进一步降低至<10-8。基于条件蛋白质的稳定性,所提出的方法在机械上与先前报道的遗传生物保护系统正交。
    Synthetic biology holds immense promise to tackle key problems in resource use, environmental remediation, and human health care. However, comprehensive safety measures are lacking to employ engineered microorganisms in open-environment applications. Genetically encoded biocontainment systems may solve this issue. Here, we describe such a system based on conditional stability of essential proteins. We used a destabilizing domain degron stabilized by estradiol addition (ERdd). We ERdd-tagged 775 essential genes and screened for strains with estradiol dependent growth. Three genes, SPC110, DIS3 and RRP46, were found to be particularly suitable targets. Respective strains showed no growth defect in the presence of estradiol and strong growth inhibition in its absence. SPC110-ERdd offered the most stringent containment, with an escape frequency of <5×10-7. Removal of its C-terminal domain decreased the escape frequency further to <10-8. Being based on conditional protein stability, the presented approach is mechanistically orthogonal to previously reported genetic biocontainment systems.
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  • 文章类型: Journal Article
    对于二倍体模式生物,实际的转基因过程需要后续的转基因管理,由于缺乏合适的方法,这在新兴的模式生物中是具有挑战性的。我们用了红面粉甲虫Triboliumcastaneum,一种储存谷物的害虫,对我们的AClashOfStrings(ACOS)和组合的AGameOfClones/AClashOfStrings(AGOC/ACOS)矢量概念进行全面的功能评估,它使用四个明显可区分的标记来提供对多达两个独立转基因的完全视觉控制。我们通过系统地创建17种用于荧光实时成像的新型单纯合和双纯合亚系,实现了对我们方法的全面统计验证。包括标记微管细胞骨架的几个亚系。在交配过程中,我们在不到80个工作小时的时间里对2万多人进行了基因分型,这相当于每个人大约10到15秒。我们还证实了我们的组合概念在两个双转基因特殊情况下的功能,即两个转基因在同一染色体上紧密接近的整合和一个转基因在X同种异体体上的整合。最后,我们讨论关于性能的向量概念,基因分型的准确性,吞吐量,资源节约潜力,荧光蛋白的选择,模块性,适应其他二倍体模式生物和扩展能力。
    For diploid model organisms, the actual transgenesis processes require subsequent periods of transgene management, which are challenging in emerging model organisms due to the lack of suitable methodology. We used the red flour beetle Tribolium castaneum, a stored-grain pest, to perform a comprehensive functional evaluation of our AClashOfStrings (ACOS) and the combined AGameOfClones/AClashOfStrings (AGOC/ACOS) vector concepts, which use four clearly distinguishable markers to provide full visual control over up to two independent transgenes. We achieved comprehensive statistical validation of our approach by systematically creating seventeen novel single and double homozygous sublines intended for fluorescence live imaging, including several sublines in which the microtubule cytoskeleton is labeled. During the mating procedures, we genotyped more than 20,000 individuals in less than 80 working hours, which corresponds to about 10 to 15 s per individual. We also confirm the functionality of our combined concept in two double transgene special cases, i.e. integration of both transgenes in close proximity on the same chromosome and integration of one transgene on the X allosome. Finally, we discuss our vector concepts regarding performance, genotyping accuracy, throughput, resource saving potential, fluorescent protein choice, modularity, adaptation to other diploid model organisms and expansion capability.
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  • 文章类型: Journal Article
    细胞活力取决于非天然氨基酸(unAA)的存在的合成营养缺陷型提供了一种强大的策略来限制转基因生物(GMO)在开放环境中的不需要的繁殖,并可能防止工业间谍活动。这里,我们描述了一种依赖于unAA的出芽酵母的强大生物抑制的通用方法。通过了解逃生机制,我们通过在琥珀抑制tRNA的产生中引入设计的“免疫”并开发基于转录和翻译的生物抑制开关来特别优化我们的策略。我们进一步开发了一种面向适应性的筛选方法,以轻松获得多重保护菌株,该菌株在固体培养基上表现出14天的强劲生长和无法检测到的逃逸频率(<〜10-9)。最后,我们表明,采用我们的多重保障体系可以限制在真实的发酵场景中感兴趣的菌株的增殖,突出了我们的酵母生物防护策略的巨大潜力,以保护工业专有菌株。
    Synthetic auxotrophy in which cell viability depends on the presence of an unnatural amino acid (unAA) provides a powerful strategy to restrict unwanted propagation of genetically modified organisms (GMOs) in open environments and potentially prevent industrial espionage. Here, we describe a generic approach for robust biocontainment of budding yeast dependent on unAA. By understanding escape mechanisms, we specifically optimize our strategies by introducing designed \"immunity\" to the generation of amber-suppressor tRNAs and developing the transcriptional- and translational-based biocontainment switch. We further develop a fitness-oriented screening method to easily obtain multiplex safeguard strains that exhibit robust growth and undetectable escape frequency (<~10-9) on solid media for 14 days. Finally, we show that employing our multiplex safeguard system could restrict the proliferation of strains of interest in a real fermentation scenario, highlighting the great potential of our yeast biocontainment strategy to protect the industrial proprietary strains.
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  • 文章类型: Journal Article
    本研究通过对3,018名中国公务员的全国调查,考察了中国公务员对转基因生物的态度。调查结果表明,中国公务员对转基因生物的态度比更广泛的中国“普通公众”更为积极,具有相似的遗传科学素养和对转基因生物阴谋论及其影响机制的信念。而中国公务员的职业素养在其转基因态度中起着重要作用。这项研究为研究某些特定群体对转基因生物和相关食品政策的态度提供了新的思路。
    This study examines Chinese civil servants\' attitudes toward genetically modified organisms by reviewing a national survey of 3,018 Chinese civil servants. The findings show that Chinese civil servants hold a more positive attitude to GMOs than the wider Chinese \"general public\", with a similar level of genetic scientific literacy and belief in GMOs conspiracy theories and their influence mechanisms. While the Chinese civil servants\' occupational literacy plays an important role in their GMOs attitude. This study provides a new mind-set for studying some specific groups\' attitudes toward GMOs and related food policies.
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  • 文章类型: Letter
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