Neotropics

新热带
  • 文章类型: Journal Article
    外生菌根(ECM)科Cortinariacae(Agaricales,蘑菇,担子菌)长期以来一直被认为是低地热带雨林中的贫困或缺席。在南美圭亚那盾牌的ECM树占主导地位的森林中,几十年的收集正在反驳这种观点,发现了许多山茱萸科物种。迄今为止,在圭亚那的Pakaraima山脉中部发现了该家族的约12种形态物种。这里,我们将其中三个描述为Cortinarius的新物种,两个描述为以ECM树属Dicymbe为主的森林中的Phlegmacium的新物种(Fabaceaesubfam。Detarioideae),阿尔迪纳(豆科植物。Papilionoideae),和Pakaraimaea(Cistaceae)。宏观形态学,微观形态学,栖息地,并为每个新物种提供DNA序列数据。
    Species of the ectomycorrhizal (ECM) family Cortinariaceae (Agaricales, Agaricomycetes, Basidiomycota) have long been considered impoverished or absent from lowland tropical rainforests. Several decades of collecting in forests dominated by ECM trees in South America\'s Guiana Shield is countering this view, with discovery of numerous Cortinariaceae species. To date, ~12 morphospecies of this family have been found in the central Pakaraima Mountains of Guyana. Here, we describe three of these as new species of Cortinarius and two as new species of Phlegmacium from forests dominated by the ECM tree genera Dicymbe (Fabaceae subfam. Detarioideae), Aldina (Fabaceae subfam. Papilionoideae), and Pakaraimaea (Cistaceae). Macromorphological, micromorphological, habitat, and DNA sequence data are provided for each new species.
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  • 文章类型: Journal Article
    马鞭草(马鞭草科,Gentianales)是木本植物的大型和泛热带属,作为许多有毒生物碱的来源,包括马钱子碱.不幸的是,Strychnos各个级别的众多名称的地位仍未解决,包括新热带中许多特定或非特定分类群的分类群。在这项研究中,我们解决Strychnosbredemeyeri(别名Lasiostomabredemeyeri),1827年描述的一种物种,基于在文献很少的奥地利Märter探险(1783-1788)期间在委内瑞拉收集的类型材料。Strychnosbredemeyeri是一种手无寸铁的藤本植物,具有孤立的卷须和腋生花序,发生在巴西的新热带雨林和稀树草原,圭亚那,特立尼达和多巴哥,委内瑞拉。我们在这里澄清了LasiostomaSchreb的命名状态。,一个非法和多余的属,目前在Strychnos下是同义词,及其前物种Lasiostomabredemeyeri[=Strychnosbredemeyeri]。此外,我们对花梗和丁香进行了分类,这两个类群目前都是S.bredemeyeri的同义词。
    Strychnos (Loganiaceae, Gentianales) is a large and pantropical genus of woody plants, ethnobotanically important as a source of many toxic alkaloids, including strychnine. Unfortunately, the status of numerous names at various ranks of Strychnos remains unresolved, including that of many specific or infraspecific taxa in the Neotropics. In this study, we address Strychnosbredemeyeri (basionym Lasiostomabredemeyeri), a species described in 1827 based on type material collected in Venezuela during the poorly documented Austrian Märter expedition (1783-1788). Strychnosbredemeyeri is an unarmed liana with solitary tendrils and axillary inflorescences that occurs in Neotropical rainforests and savannas in Brazil, Guyana, Trinidad and Tobago, and Venezuela. We clarify here the nomenclatural status of Lasiostoma Schreb., an illegitimate and superfluous genus currently in synonymy under Strychnos, and its former species Lasiostomabredemeyeri [= Strychnosbredemeyeri]. Also, we lectotypify S.pedunculata and S.trinitensis, both taxa currently synonyms of S.bredemeyeri.
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  • 文章类型: Journal Article
    Mecocephala类约有50种,仅限于新热带地区,并且在新热带地区的物种丰富度最高。一些物种使用水稻作为寄主植物,并且由于存在夸张的头部比例和独特的雄性生殖器形态而促进了它们的鉴定。该群体的分类法已经得到了广泛的探索,但是推断其单生,尤其是其内部系统发育关系一直具有挑战性。这里,我们推断了迄今为止组装最完整分类样本的群体的系统发育关系,通过相等和隐含加权简约分析分析离散和连续的形态特征。该组的单品被恢复,但根据测试的数据集,内部关系略有不同。因此,我们提出了该小组的内部安排,并提供了对Meccephala小组的正式描述,每个属的诊断,一个二分法的钥匙来识别它的属,以及形态特征和类型物种的插图。
    The Mecocephala group comprises about 50 species, restricted to the Neotropics and with the highest species richness in Neotropical South America. Several species use rice as host plants and their identification is facilitated by the presence of exaggerated head proportions and a unique male genitalic morphology. The taxonomy of the group has been extensively explored, but inferring its monophyly and especially its internal phylogenetic relationships has been challenging. Here, we inferred the phylogenetic relationships for the group assembling the most complete taxonomic sampling to date, analyzing discrete and continuous morphological characters through equal and implied weighted parsimony analyses. The monophyly of the group was recovered, but internal relationships varied slightly according to the dataset tested. Thus, we propose internal arrangements for the group and provide a formal description of the Mecocephala group, diagnoses for each genus, a dichotomous key to identify its genera, and illustrations of the morphological characters and type species.
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  • 文章类型: Journal Article
    肺炎科,或者智利达尔文黄蜂,是南美膜翅目多样性的重要组成部分,但是关于这种昆虫的分类学和分布知识仍然不足。利用最近更新的分类学知识,我们评估了属水平的生物地理关系和沿纬度梯度的生物多样性空间格局。结果显示,智利有264种,分为102属和22个亚科。生物地理关系基于六个元素(世界性(n=50;36%),地方性(n=29;21%),新热带(n=22;16%),北方-东方(n=19;14%),南温带(n=16;11%)和澳大利亚),仅由三个属组成:Anacis,Labena,和Meringops.物种和属沿纬度梯度显示双峰分布:约34°和38°S。从生态区域的角度来看,丰富度集中在瓦尔迪维安温带森林,但是当在0.5×0.5细胞尺度下评估时,温带森林和智利Matorral之间的接触区有几个杰出的细胞。另一方面,阿塔卡马沙漠几乎没有达尔文黄蜂。结果与查尔斯·波特一致,他确定了一个由新热带和世界性属组成的北部省,在遥远的北部有自己的代表(11属),阿塔卡马沙漠核心的分配差距,在波特的新北极领域大约有128属,涵盖智利从25°S到合恩角的所有地区,包括胡安·费尔南德斯群岛。这些结果加强了知识差距,并需要对现有馆藏进行更多的抽样和研究。由于此阶段的采样间隙,确定高纬度地区的丰富度持续增加或减少是不可能的。还需要更多的分类学和分布信息来评估对特有属和物种的潜在威胁。
    Ichneumonidae, or Chilean Darwin wasps, are an important component of South American hymenopteran diversity, but the taxonomic and distributional knowledge on this insect is still deficient. Taking advantage of recently updated taxonomic knowledge, we assessed biogeographic relationships at the genus level and biodiversity spatial patterns along the latitudinal gradient. The results show the presence of 264 species in Chile, arranged in 102 genera and 22 subfamilies. Biogeographic relationships are based on six elements (cosmopolitan (n = 50; 36%), endemic (n = 29; 21%), Neotropical (n = 22; 16%), Holarctic-Oriental (n = 19; 14%), south-temperate (n = 16; 11%) and Australasian) and composed of just three genera: Anacis, Labena, and Meringops. Species and genera show a bimodal distribution along the latitudinal gradient: around 34° and 38° S. From an ecoregional perspective, richness is concentrated in the Valdivian temperate forests, but when assessed at a 0.5 × 0.5 cell scale, several outstanding cells are in the contact zone between the temperate forests and the Chilean Matorral. On the other hand, the Atacama Desert shows little or no presence of Darwin wasps. The results agree with Charles Porter, who identified a northern province composed of Neotropical and cosmopolitan genera with their own representatives in the far north (11 genera), a distributional gap in the core of the Atacama Desert, and around 128 genera in Porter\'s Neantarctic realm, covering all of Chile from 25° S to Cape Horn, including the Juan Fernandez islands. These results reinforce knowledge gaps and the need for more sampling and studies of available collections. Due to sampling gaps at this stage, identifying a continued increase or decrease in richness towards higher latitudes is not possible. More taxonomic and distributional information is also needed to assess potential threats to endemic genera and species.
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  • 文章类型: Journal Article
    猎物-捕食者的相互作用导致了许多反捕食性状的进化。其中之一是猎物倾听捕食者并避开它们的能力。尽管猎物对捕食者听觉线索的反掠夺性行为反应在广泛的分类单元中得到了很好的描述,缺乏关于蝴蝶是否会改变其行为以响应其掠夺性叫声的研究。Heliconius蝴蝶令人不快,并形成苗勒式模仿环,作为对其鸟类捕食者的形态防御策略。像许多其他蝶科的蝴蝶一样,一些Heliconius蝴蝶拥有听觉器官,它们被假设为帮助捕食者检测。在这里,我们通过观察雄性和雌性H.m.Plessini的行为来测试Helconiusmelpomene是否会改变其对掠食性鸟叫声的反应。暴露于Helconius禽类捕食者的叫声中的Plessini:长尾的jacamar,迁徙的东方王鸟,和居住的热带王鸟。我们还让他们接触到了巨嘴鸟的叫声,一种节食的鸟作为控制鸟叫,和放大的温室背景噪声作为噪声控制。我们发现,个人改变他们的行为只响应jacamar电话。男性增加了行走和飘动的行为,而女性在播放jacamar电话时没有改变自己的行为。像求爱这样的性交行为,交配,腹部抬起并没有随着鸟叫声而改变。我们的研究结果表明,尽管有主要的掠夺性防御,如毒性和模仿环,普莱西尼蝴蝶响应捕食者的召唤改变了它们的行为。此外,这种反应是捕食者特有的,正如H.m.plesseni没有回应东方王鸟或热带王鸟的叫声。这表明Heliconius蝴蝶可能能够区分掠夺性叫声,以及可能与这些叫声有关的鸟类。
    Prey-predator interactions have resulted in the evolution of many anti-predatory traits. One of them is the ability for prey to listen to predators and avoid them. Although prey anti-predatory behavioural responses to predator auditory cues are well described in a wide range of taxa, studies on whether butterflies change their behaviours in response to their predatory calls are lacking. Heliconius butterflies are unpalatable and form Müllerian mimicry rings as morphological defence strategies against their avian predators. Like many other butterflies in the Nymphalidae family, some Heliconius butterflies possess auditory organs, which are hypothesized to assist with predator detection. Here we test whether Heliconius melpomene change their behaviour in response to their predatory bird calls by observing the behaviour of male and female H. m. plessini exposed to calls of Heliconius avian predators: rufous-tailed jacamar, migratory Eastern kingbird, and resident tropical kingbird. We also exposed them to the calls of the toco toucan, a frugivorous bird as a control bird call, and an amplified greenhouse background noise as a noise control. We found that individuals changed their behaviour in response to jacamar calls only. Males increased their walking and fluttering behaviour, while females did not change their behaviour during the playback of the jacamar call. Intersexual behaviours like courtship, copulation, and abdomen lifting did not change in response to bird calls. Our findings suggest that despite having primary predatory defences like toxicity and being in a mimicry ring, H. m. plessini butterflies changed their behaviour in response to predator calls. Furthermore, this response was predator specific, as H. m. plesseni did not respond to either the Eastern kingbird or the tropical kingbird calls. This suggests that Heliconius butterflies may be able to differentiate predatory calls, and potentially the birds associated with those calls.
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  • 文章类型: Journal Article
    DNA条形码和环境DNA(eDNA)代表了生物监测世界生物多样性及其威胁的重大进展。然而,这些方法高度依赖于分子数据库中物种序列的存在。巴西是世界上最大和最具生物多样性的国家之一。然而,仍然存在许多知识空白,识别,和使用分子方法监测哺乳动物生物多样性。我们的目标是解开巴西哺乳动物物种在分子数据库中的存在模式,以提高我们对使用DNA条形码和环境DNA监测它们的有效性的理解,并有助于哺乳动物的保护。我们在分子数据库中发现了许多空白,许多分类群的代表性很差,特别是来自亚马逊,Lagomorpha秩序,和树栖动物,gomivorous,濒临灭绝,和非法交易的物种。此外,我们的分析表明,物种描述年份是决定物种被测序概率的最重要因素。灵长类动物是具有最高数量的物种的群体,由于其高水平的组合威胁而被认为是测序的优先事项。我们强调需要进行投资以填补知识空白并增加分子数据库中物种的代表性,从而使用DNA条形码和环境DNA更好地监测包含不同特征的巴西哺乳动物。
    DNA barcoding and environmental DNA (eDNA) represent significant advances for biomonitoring the world\'s biodiversity and its threats. However, these methods are highly dependent on the presence of species sequences on molecular databases. Brazil is one of the world\'s largest and most biologically diverse countries. However, many knowledge gaps still exist for describing, identifying, and monitoring of mammalian biodiversity using molecular methods. We aimed to unravel the patterns of the presence of Brazilian mammal species on molecular databases to improve our understanding of how effectively it would be to monitor them using DNA barcoding and environmental DNA, and contribute to mammalian conservation. We foundt many gaps in molecular databases, with many taxa being poorly represented, particularly from Amazonia, the order Lagomorpha, and arboreal, gomivorous, near extinct, and illegally traded species. Moreover, our analyses revealed that species description year was the most important factor determining the probability of a species to being sequenced. Primates are the group with the highest number of species considered a priority for sequencing due to their high level of combined threats. We highlight where investments are needed to fill knowledge gaps and increase the representativity of species on molecular databases to enable a better monitoring ability of Brazilian mammals encompassing different traits using DNA barcoding and environmental DNA.
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  • 文章类型: Journal Article
    在修改哥伦比亚的Rinorea属(紫罗兰科)的过程中,野外观察和植物标本室研究揭示了七个新物种。此处描述的几个新物种属于需要检查来自新热带地区的植物标本室材料的物种复合物。这里描述的每个新物种都有相反排列的叶子,属于Rinoreect。Pubiflorae,限制在新热带地区的部分。两个新物种与卵形单胞菌物种群隔离:来自哥伦比亚亚马逊Chiribiquete国家公园的Rinoreachiriibiquetensis和来自哥伦比亚和委内瑞拉边界附近的奥里诺科河的Rinoreastevensii。从Rinoreahirsuta物种复合体中分离出两个新物种:Rinoreagaleanoae-bernalii和Rinoreacogolloi,两者都来自哥伦比亚马格达莱纳河谷中部的安第斯中央山脉的东坡。从广泛分布的R.pubiflora物种复合体中,我们隔离了一个新物种,Rinoreacallejasii,来自巴拿马东南部和哥伦比亚的乔科河。除了这五个新的分类群与广泛分布的物种复合物分开,我们发现了两个以前未知的物种,它们与其他新热带Rinorea具有亲和力。Rinoreaaymardii来自委内瑞拉的AltoOrinoco-Casiquare生物圈保护区,最类似于哥伦比亚的R.melanodonta。Rinoreabetancurii与R.macrocarpa隔离,发生在哥伦比亚的亚马逊地区,巴西,秘鲁和委内瑞拉。在这项研究中,我们提供描述,新物种的插图和分布图,并使用IUCN红色名录类别和标准对灭绝风险进行初步评估。我们还提供了Rinoreect物种的识别钥匙。哥伦比亚的Pubiflorae。
    Over the course of revising the genus Rinorea (Violaceae) from Colombia, field observations and herbarium studies revealed seven new species. Several of the new species described here belong to species complexes that required examination of herbarium material from across the Neotropics. Each of the new species described here have oppositely arranged leaves and belong to Rinoreasect.Pubiflorae, a section restricted to the Neotropics. Two new species are segregated from the R.ovalifolia species complex: Rinoreachiribiquetensis from Chiribiquete National Park in the Colombian Amazon and Rinoreastevensii from the Orinoco River near the border of Colombia and Venezuela. Two new species are segregated from the Rinoreahirsuta species complex: Rinoreagaleanoae-bernalii and Rinoreacogolloi, both from the eastern slopes of the Andean Central Cordillera along the mid-Magdalena River Valley in Colombia. From the widely distributed R.pubiflora species complex, we segregated one new species, Rinoreacallejasii, from southeast Panama and the Chocó in Colombia. In addition to these five new taxa segregated from widely distributed species complexes, we discovered two previously unknown species with affinities to other Neotropical Rinorea. Rinoreaaymardii is described from the Alto Orinoco-Casiquiare Biosphere Reserve in Venezuela and most closely resembles R.melanodonta from Colombia. Rinoreabetancurii is segregated from R.macrocarpa and occurs in the Amazonian Regions of Colombia, Brazil, Peru and Venezuela. In this study, we provide descriptions, illustrations and distribution maps of the new species and make preliminary assessments of the risk of extinction using the IUCN Red List Categories and Criteria. We also furnish an identification key to the species of Rinoreasect.Pubiflorae in Colombia.
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  • 文章类型: Journal Article
    相对于众多关注哺乳动物血吸虫的研究,较少包括禽类血吸虫,特别是在南半球。这种情况正在发生变化,新热带的最新研究表明,特有分类群具有显着的多样性。为了促进这一努力,九只鸭子(紫翅目,S.versicolor,Nettapeposaca),12只天鹅(天鹅座)和1,400个Physaspp。来自智利和阿根廷的蜗牛被收集用于成虫和幼虫血吸虫,分别。保存分离的血吸虫进行形态学和分子分析(28S和COI基因)。从鸟类中回收了四种不同的血吸虫类群:毛虫。在形成进化枝的蛇床子和蓝翅目中;蓝翅目和杂色毛虫寄养了毛虫;天鹅座托管了鼻血吸虫,黑血球;和一个内脏,血吸虫。sp.,从以前的工作中,它与来自阿根廷和智利的furcocer虫形成了进化枝。在生理蜗牛中,根据分子分析,只有来自阿根廷的一个人患有血吸虫草虫。这项研究代表了对智利成年血吸虫的首次描述,以及对智利和新热带的黑斑念珠菌和T.querquedulae的生命周期的阐明,分别。没有保存完好的成年人,假定的新血吸虫属。sp.无法描述,但它的生命周期涉及Chilinaspp。和C.melancoryphus.T.querquedulae的扫描电子显微镜显示,未描述的形态特征,强调其诊断的重要性。作者强调需要对新热带地区的禽血吸虫进行更多调查,以更好地了解其进化史。
    Relative to the numerous studies focused on mammalian schistosomes, fewer include avian schistosomatids particularly in the southern hemisphere. This is changing and current research emerging from the Neotropics shows a remarkable diversity of endemic taxa. To contribute to this effort, nine ducks (Spatula cyanoptera, S.versicolor, Netta peposaca), 12 swans (Cygnus melancoryphus) and 1,400 Physa spp. snails from Chile and Argentina were collected for adults and larval schistosomatids, respectively. Isolated schistosomatids were preserved for morphological and molecular analyses (28S and COI genes). Four different schistosomatid taxa were retrieved from birds: Trichobilharzia sp. in N. peposaca and S. cyanoptera that formed a clade; S.cyanoptera and S. versicolor hosted Trichobilharzia querquedulae; Cygnus melancoryphus hosted the nasal schistosomatid, Nasusbilharzia melancorhypha; and one visceral, Schistosomatidae gen. sp., which formed a clade with furcocercariae from Argentina and Chile from previous work. Of the physid snails, only one from Argentina had schistosomatid furcocercariae that based on molecular analyses grouped with T. querquedulae. This study represents the first description of adult schistosomatids from Chile as well as the elucidation of the life cycles of N.melancorhypha and T. querquedulae in Chile and Neotropics, respectively. Without well-preserved adults, the putative new genus Schistosomatidae gen. sp. could not be described, but its life cycle involves Chilina spp. and C. melancoryphus. Scanning electron microscopy of T. querquedulae revealed additional, undescribed morphological traits, highlighting its diagnostic importance. Authors stress the need for additional surveys of avian schistosomatids from the Neotropics to better understand their evolutionary history.
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  • 文章类型: Journal Article
    禽类血吸虫以水生蜗牛为中间寄主,栖息在家禽和野生鸟类的血液中。在新热带,有一个新兴的努力来描述这些宿主的物种,包括智利,尽管关于其病理后果的知识大多是研究不足。这项研究旨在描述与仅限于新热带南部锥体的本地血吸虫寄生相关的病理变化。为了实现这一点,在智利南部的两个地方共收集了401只Chilinadombeiana蜗牛(Chilinidae)。所有患者均连续三天接受子囊释放手术。对释放的furcocer虫进行染色并通过显微镜评估进行表征。然后,所有蜗牛均在立体显微镜下解剖,并保存在10%缓冲福尔马林中,直至进行组织病理学分析.发现401只蜗牛中有8只(P=2%)被禽血吸虫寄生。被释放的furcocer被鉴定为血吸虫。sp.先前在同一宿主中报道的谱系II。主要病理变化是卵细胞萎缩,周围组织中没有或轻度浸润。此外,发现与棘突的共感染与中度血细胞浸润有关,肉芽肿样病变,血吸虫孢子的存在减少。后者暗示了这两个二系人之间的拮抗相互作用,正如棘皮动物中提出的那样。-曼氏血吸虫模型.尽管有上述规定,糠ceric的释放存在但减少,与不释放棘毛虫相反。这种互动需要进一步关注。这项研究代表了首次尝试描述本地人寄生的病理后果,但没有描述,一种特有蜗牛的禽类血吸虫。未来的研究应该考虑实验性感染,以了解其他Chilina物种中单一感染的动态,包括以前的研究发现的种间和种内寄生,包括这项研究。
    Avian schistosomes inhabit the blood stream of domestic and wild birds with aquatic snails as their intermediate hosts. In the Neotropics there is an emerging effort to describe species from these hosts, including Chile, although the knowledge about their pathological consequences is mostly understudied. This study aimed to describe the pathological changes associated with the parasitism of a native schistosomatid restricted to the Southern Cone of Neotropics. To achieve this, a total of 401 Chilina dombeiana snails (Chilinidae) were collected in two locations from Southern Chile. All of them were disposed to cercarial release procedure for three consecutive days. Furcocercariae released were stained and characterized by microscopic evaluation. Then, all snails were dissected under stereomicroscope and preserved in 10 % buffered formalin until histopathological analysis was performed. Eight out 401 (P = 2 %) snails were found parasitized with avian schistosomes. The released furcocercariae were identified as Schistosomatidae gen. sp. Lineage II which was previously reported in the same host. The main pathological change was an atrophy of ovotestes and an absence or mild infiltration of hemocytes in the surrounding tissues. Besides, a co-infection with echinostomes was found which was associated with a moderate hemocyte infiltration, granuloma-like lesion, and a reduced presence of schistosome\' sporocysts. The latter would suggest an antagonistic interaction between these two digeneans, as has been proposed in the Echinostoma spp.-Schistosoma mansoni model. Despite the above, the release of furcocercariae was present but reduced, in contrast with the non-release of echinocercariae. This interaction requires further attention. This study represents the first attempt to characterize the pathological consequences of parasitism by a native, yet undescribed, avian schistosome in an endemic snail. Future studies should consider experimental infections to understand the dynamics of single infections in other Chilina species, including inter- and intra-specific parasitism as previous studies have found, including this study.
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  • 文章类型: Journal Article
    背景:虎杖科是一个以杂草闻名的家族,和可食用的植物,苦参(荞麦)和大黄(大黄),主要是草本和温带分布。然而,该家族还包含许多主要分布在热带和亚热带的血统。值得注意的是,这些血统是木质的,不像他们温和的亲戚。迄今为止,全基因组测序集中在温带和草本类群。为了增加对the科遗传知识的广度,我们在这里展示了六个完全组装和注释的叶绿体基因组,来自六个热带,木本属:Coccolobarugosa(一种狭窄且濒临灭绝的波多黎各特有物种),绞股蓝,emarginataNeomillspaughia,墨西哥Podopterus,Ruprechtiacoriacea,还有三叶草.
    结果:这些组件代表了Podopterus属的第一个公开可用的组装和注释的质体,体操,和Neomillspaughia,和第一个组装和注释的硬体,Ruprechtiacoriacea,还有三叶草.我们发现组装的叶绿体基因组高于虎杖科质体的中位数大小,但在其他方面表现出典型的家庭特征。在ndh基因和质体的小单拷贝(SSC)区域中发现了最大的序列变异特征。反向重复序列显示出高GC含量和跨属的小序列变异。当放置在系统发育环境中时,我们的序列在Eriogonoideae中得到了解析。
    结论:这六个来自热带木本虎杖科的质体在该科中具有典型性。此处介绍的Ruprechtiacoriacea的质体组装质疑先前发表的R.albida的质体组装的序列同一性。
    BACKGROUND: The Polygonaceae is a family well-known for its weeds, and edible plants, Fagopyrum (buckwheat) and Rheum (rhubarb), which are primarily herbaceous and temperate in distribution. Yet, the family also contains a number of lineages that are principally distributed in the tropics and subtropics. Notably, these lineages are woody, unlike their temperate relatives. To date, full-genome sequencing has focused on the temperate and herbaceous taxa. In an effort to increase breadth of genetic knowledge of the Polygonaceae, we here present six fully assembled and annotated chloroplast genomes from six of the tropical, woody genera: Coccoloba rugosa (a narrow and endangered Puerto Rican endemic), Gymnopodium floribundum, Neomillspaughia emarginata, Podopterus mexicanus, Ruprechtia coriacea, and Triplaris cumingiana.
    RESULTS: These assemblies represent the first publicly-available assembled and annotated plastomes for the genera Podopterus, Gymnopodium, and Neomillspaughia, and the first assembled and annotated plastomes for the species Coccoloba rugosa, Ruprechtia coriacea, and Triplaris cumingiana. We found the assembled chloroplast genomes to be above the median size of Polygonaceae plastomes, but otherwise exhibit features typical of the family. The features of greatest sequence variation are found among the ndh genes and in the small single copy (SSC) region of the plastome. The inverted repeats show high GC content and little sequence variation across genera. When placed in a phylogenetic context, our sequences were resolved within the Eriogonoideae.
    CONCLUSIONS: These six plastomes from among the tropical woody Polygonaceae appear typical within the family. The plastome assembly of Ruprechtia coriacea presented here calls into question the sequence identity of a previously published plastome assembly of R. albida.
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