LUAD

LUAD
  • 文章类型: Journal Article
    肺腺癌(LUAD)是全球癌症死亡的主要原因,发病率高,生存率低。烟碱乙酰胆碱受体在LUAD的进展中起重要作用。在这项研究中,对17种烟碱乙酰胆碱受体变构剂的筛选显示,多杀菌素有效抑制了LUAD细胞的增殖。实验证明,多杀菌素诱导细胞周期阻滞在G1期,并刺激细胞凋亡,从而阻碍LUAD的生长,并在体外和体内增强对吉非替尼的反应性。通过转录组测序获得的机制见解,共同IP,和蛋白质免疫印迹表明多杀菌素破坏了CHRNA5和EGFR之间的相互作用,从而抑制下游复合物的形成和EGFR信号通路的激活。补充外源性乙酰胆碱可以减轻多杀菌素对LUAD细胞增殖的抑制作用。本研究阐明了多杀菌素在LUAD中的治疗作用和机制。为新型LUAD治疗提供了理论和实验基础。
    Lung adenocarcinoma (LUAD) is the leading cause of cancer death worldwide, with high incidence and low survival rates. Nicotinic acetylcholine receptors play an important role in the progression of LUAD. In this study, a screening of 17 nicotinic acetylcholine receptor allosteric agents revealed that spinosad effectively suppressed the proliferation of LUAD cells. The experiments demonstrated that spinosad induced cell cycle arrest in the G1 phase and stimulated apoptosis, thereby impeding the growth of LUAD and enhancing the responsiveness to gefitinib in vitro and vivo. Mechanistic insights obtained through transcriptome sequencing, Co-IP, and protein immunoblots indicated that spinosad disrupted the interaction between CHRNA5 and EGFR, thereby inhibiting the formation of downstream complexes and activation of the EGFR signaling pathway. The supplementation of exogenous acetylcholine showed to mitigate the inhibition of LUAD cell proliferation induced by spinosad. This study elucidates the therapeutic effects and mechanisms of spinosad in LUAD, and offers a theoretical and experimental foundation for novel LUAD treatments.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:肺腺癌(LUAD)的复杂生物学机制,以缺乏独特的生物标志物为特征,仍然难以捉摸。长非编码RNA(lncRNA)的存在已被确定为在癌发生中起作用。然而,lncRNACYTOR在LUAD中的调节作用和机制尚未阐明。
    方法:在本研究中,采用RT-qPCR和Westernblot检测基因mRNA和蛋白表达,分别。通过CCK-8测定评价细胞增殖。进行Transwell以测定细胞迁移和侵袭。通过异种移植动物模型研究体内CYTOR的功能。
    结果:我们观察到LUAD中CYTOR的明显上调。沉默CYTOR显著减少增殖,迁移,和LUAD细胞的侵袭能力。机制分析表明CYTOR靶向miR-503-5p/PCSK9轴。此外,miR-503-5p的抑制部分逆转了CYTOR沉默对LUAD细胞恶性进展的抑制作用。动物实验表明CYTOR/miR-503-5p/PCSK9抑制了裸鼠体内肿瘤的形成。
    结论:这些研究结果表明,lncRNACYTOR在LUAD中起着癌基因的作用,通过miR-503-5p/PCSK9轴调节肿瘤恶性进展。这项研究揭示了LUAD进展的新调控机制,为LUAD提供潜在的治疗靶点。
    BACKGROUND: The intricate biological mechanism underlying lung adenocarcinoma (LUAD), characterized by a deficiency of distinctive biomarkers, remain elusive. The presence of Long non-coding RNAs (lncRNAs) have been established to play a role in carcinogenesis. Nevertheless, the regulatory effects and mechanisms of lncRNA CYTOR in LUAD have yet to be elucidated.
    METHODS: In this study, RT-qPCR and Western blot were adopted to examine gene mRNA and protein expression, respectively. Cell proliferation was evaluated by CCK-8 assays. Transwell was performed to assay cell migration and invasion. The function of CYTOR in vivo was investigated through a xenograft animal model.
    RESULTS: We observed an apparent upregulation of CYTOR in LUAD. Silencing CYTOR significantly reduced proliferation, migration, and invasion capabilities of LUAD cells. Mechanism analysis indicated that CYTOR targeted the miR-503-5p/PCSK9 axis. Additionally, inhibiting of miR-503-5p partially reversed the inhibitory effects of CYTOR silencing on the malignant progression of LUAD cells. Animal experiments revealed that CYTOR/miR-503-5p/PCSK9 curbed tumor formation of nude mice in vivo.
    CONCLUSIONS: These findings demonstrated that lncRNA CYTOR acted as an oncogene in LUAD, regulating tumor malignant progression through the miR-503-5p/PCSK9 axis. This study unveiled a new regulation mechanism of LUAD progression, offering potential therapeutic targets for LUAD.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:在肿瘤微环境(TME)中,缺氧和乳酸代谢之间存在双向关系,每个组件对另一个组件施加相互影响,形成了不可分割的联系。本研究的目的是通过合并与缺氧和乳酸代谢相关的基因来建立预后模型。该模型旨在作为预测患者预后的工具,包括生存率,免疫微环境的状态,以及肺腺癌(LUAD)患者对治疗的反应性。
    方法:从癌症基因组图谱(TCGA)和基因表达综合(GEO)的综合存储库中获得对LUAD特异的转录组测序数据和患者临床信息。从一系列可访问的数据集组装了与缺氧和乳酸代谢有关的基因汇编。采用单变量和多变量Cox回归分析。额外的调查程序,包括肿瘤突变负荷(TMB),微卫星不稳定性(MSI),功能富集评估和估计,CIBERSORT,和TIDE算法,用于评估药物敏感性和预测免疫疗法的疗效。
    结果:包含5个乳酸和缺氧相关基因(LHRGs)的新型预后标记,PKFP,SLC2A1,BCAN,CDKN3和ANLN,已建立。该模型表明,LHRG相关风险评分升高的LUAD患者的生存率显着降低。单变量和多变量Cox分析均证实,风险评分是总体生存率的可靠预后指标。免疫表型显示记忆CD4+T细胞浸润增加,与低风险患者相比,树突状细胞和NK细胞被归类为高风险类别。在高危人群中,肺腺癌驱动基因突变的可能性更高,MSI与风险评分相关.功能富集分析表明,在高风险组中,细胞周期相关途径占优势。而代谢途径在低危组更为普遍.此外,药物敏感性分析显示,高危人群对各种药物的敏感性增加,特别是PI3K-AKT的抑制剂,EGFR,和ELK通路。
    结论:该预后模型整合了乳酸代谢和缺氧参数,提供关于生存的预测性见解,免疫细胞浸润和功能,以及LUAD患者的治疗反应性。该模型可以促进个性化治疗策略,根据每个患者疾病的独特分子特征定制干预措施。
    BACKGROUND: In the tumor microenvironment (TME), a bidirectional relationship exists between hypoxia and lactate metabolism, with each component exerting a reciprocal influence on the other, forming an inextricable link. The aim of the present investigation was to develop a prognostic model by amalgamating genes associated with hypoxia and lactate metabolism. This model is intended to serve as a tool for predicting patient outcomes, including survival rates, the status of the immune microenvironment, and responsiveness to therapy in patients with lung adenocarcinoma (LUAD).
    METHODS: Transcriptomic sequencing data and patient clinical information specific to LUAD were obtained from comprehensive repositories of The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO). A compendium of genes implicated in hypoxia and lactate metabolism was assembled from an array of accessible datasets. Univariate and multivariate Cox regression analyses were employed. Additional investigative procedures, including tumor mutational load (TMB), microsatellite instability (MSI), functional enrichment assessments and the ESTIMATE, CIBERSORT, and TIDE algorithms, were used to evaluate drug sensitivity and predict the efficacy of immune-based therapies.
    RESULTS: A novel prognostic signature comprising five lactate and hypoxia-related genes (LHRGs), PKFP, SLC2A1, BCAN, CDKN3, and ANLN, was established. This model demonstrated that LUAD patients with elevated LHRG-related risk scores exhibited significantly reduced survival rates. Both univariate and multivariate Cox analyses confirmed that the risk score was a robust prognostic indicator of overall survival. Immunophenotyping revealed increased infiltration of memory CD4 + T cells, dendritic cells and NK cells in patients classified within the high-risk category compared to their low-risk counterparts. Higher probability of mutations in lung adenocarcinoma driver genes in high-risk groups, and the MSI was associated with the risk-score. Functional enrichment analyses indicated a predominance of cell cycle-related pathways in the high-risk group, whereas metabolic pathways were more prevalent in the low-risk group. Moreover, drug sensitivity analyses revealed increased sensitivity to a variety of drugs in the high-risk group, especially inhibitors of the PI3K-AKT, EGFR, and ELK pathways.
    CONCLUSIONS: This prognostic model integrates lactate metabolism and hypoxia parameters, offering predictive insights regarding survival, immune cell infiltration and functionality, as well as therapeutic responsiveness in LUAD patients. This model may facilitate personalized treatment strategies, tailoring interventions to the unique molecular profile of each patient\'s disease.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景:在肺腺癌(LUAD)和严重急性呼吸综合征(SARS)中,可以在肺组织中检测到不受控制的炎症。SARS-CoV-1E蛋白中的PDZ结合基序(PBM)已被证明是诱导细胞因子风暴的毒力因子。
    方法:为了确定PBM诱导的基因表达波动,分析了感染野生型(SARS-CoV-1-E-wt)或重组病毒(SARS-CoV-1-E-mutPBM)的肺组织的微阵列测序数据,其次是功能富集分析。为了了解所筛选的基因在LUAD中的作用,计算总生存期和免疫相关性.
    结果:共有12个基因可能通过表达变异和突变参与LUAD的初始和发育阶段。此外,共有12个基因失调可能导致预后较差.此外,PBM下调MAMDC2和ITGA8也可能影响患者预后.尽管保守的PBM(-D-L-L-V-)可以在冠状病毒的多个E蛋白的羧基末端发现,每种蛋白质的特定功能取决于整个氨基酸序列。
    结论:总之,含有SARS-CoV-1E蛋白的PBM通过调节重要基因表达谱并随后影响免疫反应和总体预后来促进LUAD的致癌作用。
    BACKGROUND: In both lung adenocarcinoma (LUAD) and severe acute respiratory syndrome (SARS), uncontrolled inflammation can be detected in lung tissue. The PDZ-binding motif (PBM) in the SARS-CoV-1 E protein has been demonstrated to be a virulence factor that induces a cytokine storm.
    METHODS: To identify gene expression fluctuations induced by PBM, microarray sequencing data of lung tissue infected with wild-type (SARS-CoV-1-E-wt) or recombinant virus (SARS-CoV-1-E-mutPBM) were analyzed, followed by functional enrichment analysis. To understand the role of the screened genes in LUAD, overall survival and immune correlation were calculated.
    RESULTS: A total of 12 genes might participate in the initial and developmental stages of LUAD through expression variation and mutation. Moreover, dysregulation of a total of 12 genes could lead to a poorer prognosis. In addition, the downregulation of MAMDC2 and ITGA8 by PBM could also affect patient prognosis. Although the conserved PBM (-D-L-L-V-) can be found at the end of the carboxyl terminus in multiple E proteins of coronaviruses, the specific function of each protein depends on the entire amino acid sequence.
    CONCLUSIONS: In summary, PBM containing the SARS-CoV-1 E protein promoted the carcinogenesis of LUAD by dysregulating important gene expression profiles and subsequently influencing the immune response and overall prognosis.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:根据2022年全球癌症统计数据,肺癌是全球癌症相关死亡的主要原因。肺腺癌(LUAD),非小细胞肺癌(NSCLC)的组织学亚型,占原发性肺癌的40%。因此,迫切需要鉴定新的预后标志物作为LUAD的临床预测标志物.
    目的:本研究旨在探讨角蛋白80(KRT80)在LUAD预后中的作用及其机制。
    方法:使用从癌症基因组图谱(TCGA)数据库检索的数据进行生物信息学分析。基因本体论(GO)和京都基因和基因组百科全书(KEGG)数据库被用来预测所涉及的生物过程和信号通路,分别。LinkedOmics数据库用于鉴定与KRT80相关的差异表达基因(DEGs)。构建列线图和Kaplan-Meier图以评估诊断为LUAD的患者的生存结果。此外,采用TIMER对KRT80表达与免疫细胞浸润进行相关性分析,揭示了LUAD中KRT80与肿瘤微环境之间复杂的相互作用。确定KRT80在LUAD和邻近正常组织中的RNA和蛋白表达水平,采用逆转录定量聚合酶链反应(RT-qPCR)和免疫组织化学技术,分别。
    结果:对TCGA数据集的审查显示,整个泛癌组织中的KRT80上调,与健康肺组织相比,LUAD显著升高。这一发现在我们的临床样本中得到了验证,其中Kaplan-Meier存活曲线表明LUAD中KRT80高表达的存活率较差。LUAD样本中KRT80的转录水平与临床参数呈正相关。如淋巴结转移分期,远处转移,和病理阶段。生存,逻辑回归,Cox回归分析强调了LUAD中KRT80高表达的临床预后意义。列线图结果强调了KRT80对LUAD患者生存的强大预测潜力。基因功能富集分析主要将KRT80与细胞因子-细胞因子受体相互作用相关,细胞周期,凋亡,和趋化因子信号通路。根据免疫浸润分析的结果,可以发现KRT80的表达与LUAD患者的免疫细胞亚群和生存率有关。
    结论:我们的研究揭示了LUAD中KRT80的显著上调,升高的KRT80表达与不良预后相关。这项研究代表了对LUAD中KRT80表达的全面和系统的评估,包括其预后和诊断意义,以及潜在的机制。我们的研究结果表明,KRT80可能成为LUAD中一种新的预后和预测性生物标志物。
    BACKGROUND: According to the 2022 Global Cancer Statistics, lung cancer is the leading cause of cancer-related mortality worldwide. Lung adenocarcinoma (LUAD), which is a histological subtype of Non- Small Cell Lung Cancer (NSCLC), accounts for 40% of primary lung cancer. Therefore, there is an urgent need to identify new prognostic markers as clinical predictive markers for LUAD.
    OBJECTIVE: This study aimed to investigate the role of Keratin 80 (KRT80) in the prognosis of LUAD and its underlying mechanisms.
    METHODS: Bioinformatics analysis was conducted using data retrieved from The Cancer Genome Atlas (TCGA) databases. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases were employed to predict the involved biological processes and signaling pathways, respectively. The LinkedOmics database was utilized to identify differentially expressed genes (DEGs) correlated with KRT80. Nomograms and Kaplan-Meier plots were constructed to evaluate the survival outcomes of patients diagnosed with LUAD. Moreover, TIMER was employed to conduct correlation analyses between KRT80 expression and immune cell infiltration, shedding light on the intricate interplay between KRT80 and the tumor microenvironment in LUAD. To ascertain the RNA and protein expression levels of KRT80 in LUAD and adjacent normal tissues, Reverse Transcription-quantitative Polymerase Chain Reaction (RT-qPCR) and immunohistochemistry techniques were employed, respectively.
    RESULTS: Scrutiny of the TCGA dataset revealed KRT80 up-regulation across pan-cancer tissues, notably elevated in LUAD compared to healthy lung tissues. This finding was validated in our clinical samples, where Kaplan-Meier survival curves indicated poorer survival rates for high KRT80 expression in LUAD. A positive correlation was found between the transcription level of KRT80 in LUAD samples and clinical parameters, such as lymph node metastasis stage, distant metastasis, and pathological stage. Survival, logistic regression, and Cox regression analyses emphasized the clinical prognostic significance of high KRT80 expression in LUAD. Nomogram results underscored the robust predictive potential of KRT80 for the survival of LUAD patients. Gene functional enrichment analyses mainly associated KRT80 with cytokine-cytokine receptor interactions, cell cycle, apoptosis, and chemokine signaling pathways. Based on the results of the immune infiltration analysis, it can be found that the expression of KRT80 is related to the immune cell subsets and survival rate of patients with LUAD.
    CONCLUSIONS: Our research revealed a significant upregulation of KRT80 in LUAD, with heightened KRT80 expression correlating with unfavorable prognosis. This study represents a comprehensive and systematic evaluation of KRT80 expression in LUAD, encompassing its prognostic and diagnostic significance, as well as underlying mechanisms. Our findings suggest that KRT80 may emerge as a novel prognostic and predictive biomarker in LUAD.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    肺腺癌(LUAD),全球最常见的肺癌亚型,随着诊断的进步,预后有所改善,外科,放射治疗,和分子治疗技术,而其5年生存率仍然很低。分子生物标志物提供预后价值。氧化应激因素,如活性氮物种和ROS,在肿瘤进展的不同阶段至关重要,影响细胞转化,扩散,血管生成,和转移。ROS表现出双重角色,影响肿瘤细胞,缺氧敏感性,和微环境。迄今为止,尚未对LUAD中的氧化应激进行综合分析。因此,我们基于氧化应激相关基因系统研究了LUAD中氧化应激的调控模式,并将这些模式与肿瘤免疫微环境的细胞浸润特征相关联.该模型利用单因素Cox分析来筛选具有预后价值的关键差异基因,并采用最小绝对收缩和选择算子(LASSO)惩罚Cox回归分析来构建与预后相关的预测模型。基于该模型选择10个候选基因。使用这十个基因的系数和表达水平构建风险评分。此外,本研究确定了该风险评分对总生存期(OS)的影响.差异表达最显著的两个基因,SFTPB和S100P,通过qRT-PCR选择。细胞实验包括CCK-8,Edu,transwell分析证实了它们对肺癌细胞生长的影响,与生物信息学分析结果一致。这些发现表明该模型对评估肺腺癌的预后具有潜在的临床价值。
    Lung adenocarcinoma (LUAD), the most common subtype of lung cancer globally, has seen improved prognosis with advancements in diagnostic, surgical, radiotherapy, and molecular therapy techniques, while its 5-year survival rate remains low. Molecular biomarkers provide prognostic value. Oxidative stress factors, such as reactive nitrogen species and ROS, are crucial in various stages of tumor progression, influencing cell transformation, proliferation, angiogenesis, and metastasis. ROS demonstrate dual roles, affecting tumor cells, hypoxia sensitivity, and the microenvironment. Comprehensive analysis of oxidative stress in LUAD has not been conducted to date. Therefore, we systematically investigated the regulatory patterns of oxidative stress in LUAD based on oxidative stress-related genes and correlated these patterns with cellular infiltration characteristics of the tumor immune microenvironment. The model utilizes single-factor Cox analysis to screen key differential genes with prognostic value and employs least absolute shrinkage and selection operator (LASSO) penalized Cox regression analysis to construct a prognostic-related prediction model. Ten candidate genes were selected based on this model. The risk score was constructed using the coefficients and expression levels of these ten genes. Furthermore, the impact of this risk score on overall survival (OS) was determined. Two genes with the most significant differential expression, SFTPB and S100P, were selected through qRT-PCR. Cell experiments including CCK-8, Edu, transwell assays confirmed their effects on lung cancer cells growth, consistent with the results of bioinformatics analysis. These findings suggested that this model held potential clinical value for evaluating the prognosis of lung adenocarcinoma.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    锌指蛋白(ZNFs)在肿瘤的发生和发展中起重要作用。然而,ZNF610对肺腺癌(LUAD)的具体作用尚不清楚.本研究旨在阐明ZNF610在LUAD中的作用。LUAD的转录数据从癌症基因组图谱程序(TCGA)数据库获得,并通过R程序进行处理。在各种细胞系中评估ZNF610的表达。为了比较有或没有ZNF610沉默的细胞的增殖能力,CCK8,细胞集落形成试验,使用无Celigo标记的细胞计数测定。此外,进行了transwell迁移和侵袭试验以评估细胞的迁移和侵袭能力。使用定量实时聚合酶链反应(qRT-PCR)和蛋白质印迹技术评估基因和蛋白质的表达水平。在不同的LUAD细胞中,发现与MRC-5和BASE-2B细胞相比,在LUAD细胞中ZNF610的表达水平显著更高。此外,ZNF610的沉默导致细胞增殖和迁移能力下降。此外,沉默ZNF610后细胞凋亡率增加。值得注意的是,G0/G1期细胞比例增加,而ZNF610沉默后S期细胞比例下降。最后,β-连环蛋白和蜗牛被鉴定为细胞中ZNF610的下游靶标。我们的研究结果表明,沉默ZNF610可以抑制LUAD细胞增殖和迁移,可能是通过下调β-连环蛋白和蜗牛。
    Zinc finger proteins (ZNFs) play a significant role in the initiation and progression of tumors. Nevertheless, the specific contribution of ZNF610 to lung adenocarcinoma (LUAD) remains poorly understood. This study sought is to elucidate the role of ZNF610 in LUAD. Transcript data of LUAD were obtained from The Cancer Genome Atlas Program (TCGA) database and processed via R program. The expression of ZNF610 was assessed in various cell lines. To compare the proliferative capacity of cells with or without ZNF610 silencing, CCK8, cell colony formation assay, and Celigo label-free cell counting assay were employed. Furthermore, transwell migration and invasion assays were conducted to evaluate the migratory and invasive abilities of the cells. The expression levels of genes and proteins were assessed using quantitative real-time polymerase chain reaction (qRT-PCR) and western blot techniques. In different LUAD cells, the expression level of ZNF610 was found to be significantly higher in LUAD cells compared to MRC-5 and BASE-2B cells. Moreover, the silencing of ZNF610 resulted in a decrease in cell proliferation and migration abilities. Additionally, the apoptosis rate of cells increased upon silencing ZNF610. Notably, the proportion of cells in the G0/G1 phase increased, while the proportion of cells in the S phase decreased following ZNF610 silencing. Finally, β-catenin and snail were identified as downstream targets of ZNF610 in cells. Our findings suggest that silencing ZNF610 could inhibit LUAD cell proliferation and migration, possibly through the downregulation of β-catenin and snail.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    基于顺铂的化疗经常被用作晚期肺癌的主要治疗方法。然而,相当比例的患者可能对顺铂产生耐药性,导致化疗疗效下降。通过分析基因表达综合数据库,TSPAN6已被确定为赋予顺铂耐药性的关键因素,归因于其对NF-κB信号通路的激活。使用siRNA敲低TSPAN6导致A549细胞中NF-κB的表达水平降低。这表明TSPAN6可能对肺癌顺铂耐药性具有双重作用,并且可以作为具有顺铂耐药性的个体的有希望的治疗靶标。
    Cisplatin-based chemotherapy is frequently employed as the primary therapeutic approach for advanced lung cancer. Nevertheless, a significant proportion of patients may develop resistance to cisplatin, leading to diminished efficacy of chemotherapy. Through analysis of Gene Expression Omnibus databases, TSPAN6 has been identified as a key factor in conferring resistance to cisplatin, attributed to its activation of the NF-κB signaling pathway. Knockdown of TSPAN6 using siRNA resulted in decreased expression levels of NF-κB in A549 cells. This indicates that TSPAN6 may have dual effects on lung cancer cisplatin resistance and could serve as a promising therapeutic target for individuals with cisplatin resistance.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    目的:研究肺癌相关基因miRNA靶位点中高影响的单核苷酸多态性(SNPs)。材料和方法:肺癌基因获自UniprotKB。miRNA靶位点SNP来自MirSNP,miRdSNP和TargetScan。SNP根据结合影响入围,次要等位基因频率和保守性。在健康与肺癌组织中分析具有高影响SNP的基因中的基因表达。此外,富集,进行了路径和网络分析。结果:在肺癌相关基因的miRNA靶位点中鉴定出19个高影响的SNP。这些SNP影响miRNA结合和基因表达。这些基因参与关键的癌症相关途径。结论:鉴定的高影响miRNA靶位点SNP和相关基因为不同人群肺癌患者的病例对照研究提供了起点。
    [方框:见正文]。
    Aim: The study aims to identify high-impact single nucleotide polymorphisms (SNPs) in miRNA target sites of genes associated with lung cancer. Materials & methods: Lung cancer genes were obtained from Uniprot KB. miRNA target site SNPs were mined from MirSNP, miRdSNP and TargetScan. SNPs were shortlisted based on binding impact, minor allele frequency and conservation. Gene expression was analyzed in genes with high-impact SNPs in healthy versus lung cancer tissue. Additionally, enrichment, pathway and network analyzes were performed. Results: 19 high-impact SNPs were identified in miRNA target sites of lung cancer-associated genes. These SNPs affect miRNA binding and gene expression. The genes are involved in key cancer related pathways. Conclusion: The identified high-impact miRNA target site SNPs and associated genes provide a starting point for case-control studies in lung cancer patients in different populations.
    [Box: see text].
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    在病理获取困难的情况下,从影像学图像中区分腺癌和鳞状细胞癌缺乏共识,每个医生只能根据自己的经验做出判断。本研究旨在提取胸部CT的影像学特征,通过Logistic单变量和多变量分析提取敏感因素,和模型来区分肺鳞癌和肺腺癌。
    我们从癌症影像档案(TCIA)下载了明确诊断为腺癌和鳞状细胞癌的胸部CT扫描,放射科医生和胸外科医生提取了19个成像特征,包括位置,针状,分叶,空腔,空泡征,坏死,胸膜牵引征,维管束征,空气支气管图征象,钙化,增强程度,与肺门的距离,肺不张,肺门和支气管淋巴结,纵隔淋巴结,小叶间隔增厚,肺转移,相邻结构侵入,胸腔积液.首先,我们应用R语言的glm函数对所有变量进行Logistic单变量分析,以选择P<0.1的变量。然后,对选定的变量进行逻辑多变量分析,得到预测模型。接下来,使用R语言中的roc函数计算AUC值并绘制ROC曲线,使用val。prob函数在R语言中绘制Calibrat曲线,并使用R语言的rmda软件包绘制DCA曲线和临床影响曲线。同时,将2023年至2024年在我院放疗科和胸外科经手术或活检确诊为肺鳞癌和肺腺癌的45例患者纳入验证组。胸部CT特征由上述两位医生共同确定并记录,并纳入验证组。包含的图像特征数据完整,不需要预处理,所以直接进入统计计算。执行ROC曲线,校正曲线,DCA,和验证组的临床影响曲线,进一步验证预测模型。如果预测模型在验证组中表现良好,进一步绘制列线图进行演示。
    这项研究从TCIA下载的75名患者的胸部CT扫描中提取了19个成像特征,最终选择了18个完整数据进行分析。首先,进行了单因素分析和多因素分析,总共获得了5个变量:针尖,坏死,空气支气管图征象,肺不张,肺门和支气管淋巴结。在AUC=0.887进行建模分析后,使用我院的临床病例建立验证组,在验证组中绘制ROC曲线,AUC=0.865,通过校准曲线评估模型的准确性,通过DCA曲线评估模型在临床实践中的可靠性,并通过临床影响曲线进一步评价模型在临床实践中的实用性。
    可以从普通的胸部CT扫描中提取有影响力的特征,以确定肺腺癌和鳞状细胞癌。我们建立的模型在辨别方面表现得很好,准确度,可靠性,和实用性。
    UNASSIGNED: In situations where pathological acquisition is difficult, there is a lack of consensus on distinguishing between adenocarcinoma and squamous cell carcinoma from imaging images, and each doctor can only make judgments based on their own experience. This study aims to extract imaging features of chest CT, extract sensitive factors through logistic univariate and multivariate analysis, and model to distinguish between lung squamous cell carcinoma and lung adenocarcinoma.
    UNASSIGNED: We downloaded chest CT scans with clear diagnosis of adenocarcinoma and squamous cell carcinoma from The Cancer Imaging Archive (TCIA), extracted 19 imaging features by a radiologist and a thoracic surgeon, including location, spicule, lobulation, cavity, vacuolar sign, necrosis, pleural traction sign, vascular bundle sign, air bronchogram sign, calcification, enhancement degree, distance from pulmonary hilum, atelectasis, pulmonary hilum and bronchial lymph nodes, mediastinal lymph nodes, interlobular septal thickening, pulmonary metastasis, adjacent structures invasion, pleural effusion. Firstly, we apply the glm function of R language to perform logistic univariate analysis on all variables to select variables with P < 0.1. Then, perform logistic multivariate analysis on the selected variables to obtain a predictive model. Next, use the roc function in R language to calculate the AUC value and draw the ROC curve, use the val.prob function in R language to draw the Calibrat curve, and use the rmda package in R language to draw the DCA curve and clinical impact curve. At the same time, 45 patients diagnosed with lung squamous cell carcinoma and lung adenocarcinoma through surgery or biopsy in the Radiotherapy Department and Thoracic Surgery Department of our hospital from 2023 to 2024 were included in the validation group. The chest CT features were jointly determined and recorded by the two doctors mentioned above and included in the validation group. The included image feature data are complete and does not require preprocessing, so directly entering statistical calculations. Perform ROC curves, calibration curves, DCA, and clinical impact curves in the validation group to further validate the predictive model. If the predictive model performs well in the validation group, further draw a nomogram to demonstrate.
    UNASSIGNED: This study extracted 19 imaging features from the chest CT scans of 75 patients downloaded from TCIA and finally selected 18 complete data for analysis. First, univariate analysis and multivariate analysis were performed, and a total of 5 variables were obtained: spicule, necrosis, air bronchogram Sign, atelectasis, pulmonary hilum and bronchial lymph nodes. After conducting modeling analysis with AUC = 0.887, a validation group was established using clinical cases from our hospital, Draw ROC curve with AUC = 0.865 in the validation group, evaluate the accuracy of the model through Calibrate calibration curve, evaluate the reliability of the model in clinical practice through DCA curve, and further evaluate the practicality of the model in clinical practice through clinical impact curve.
    UNASSIGNED: It is possible to extract influential features from ordinary chest CT scans to determine lung adenocarcinoma and squamous cell carcinoma. The model we have set up performs well in terms of discrimination, accuracy, reliability, and practicality.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

公众号