Cyclin-Dependent Kinase Inhibitor p21

细胞周期蛋白依赖性激酶抑制剂 p21
  • 文章类型: Journal Article
    衰老研究的一个关键挑战是延长寿命,同时减缓功能衰退,以便延长健康生活(健康)。这里,我们显示每月通关,从20个月开始,少量高表达p21Cip1(p21high)的细胞可以改善心脏和代谢功能,并延长小鼠的中位寿命和最长寿命。重要的是,通过每月评估这些小鼠的健康和身体功能直到死亡,我们表明p21high细胞的清除可以改善生命所有剩余阶段的身体功能,建议healthspan延伸。机械上,p21high细胞包括具有相对保守的促炎特征的几种细胞类型。p21high细胞的清除减少炎症并减轻各种组织的与年龄相关的转录组特征。这些发现证明了健康跨度在小鼠中延伸的可行性,并表明p21high细胞作为健康衰老的治疗靶标。
    A key challenge in aging research is extending lifespan in tandem with slowing down functional decline so that life with good health (healthspan) can be extended. Here, we show that monthly clearance, starting from 20 months, of a small number of cells that highly express p21Cip1 (p21high) improves cardiac and metabolic function and extends both median and maximum lifespans in mice. Importantly, by assessing the health and physical function of these mice monthly until death, we show that clearance of p21high cells improves physical function at all remaining stages of life, suggesting healthspan extension. Mechanistically, p21high cells encompass several cell types with a relatively conserved proinflammatory signature. Clearance of p21high cells reduces inflammation and alleviates age-related transcriptomic signatures of various tissues. These findings demonstrate the feasibility of healthspan extension in mice and indicate p21high cells as a therapeutic target for healthy aging.
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  • 文章类型: Journal Article
    转移性黑色素瘤,一种致命的皮肤癌,经常对BRAF抑制剂药物vemurafenib产生耐药性,强调需要了解潜在的耐药机制,并探索针对整合素和TGF-β信号传导的潜在治疗策略。在这项研究中,研究了整合素和TGF-β信号在黑色素瘤中vemurafenib耐药中的作用,并研究了维罗非尼与西伦吉肽联合作为治疗策略的潜力。在这项研究中,发现PAI1和p21的转录是由获得性维罗非尼抗性诱导的,和ITGA5水平由于这种抗性而增加。在vemurafenib抗性的发展中,ITGA5的转录由TGF-β途径介导。维罗非尼和西仑吉肽的联合治疗观察到对维罗非尼耐药的黑色素瘤细胞增殖的协同作用。此外,这种联合疗法显著降低了这些耐药细胞的侵袭和集落形成.总之,建议靶向整合素和TGF-β信号,特别是ITGA5、ITGB3、PAI1和P21,可能提供有希望的方法来克服维罗非尼耐药性,从而改善转移性黑色素瘤患者的预后。
    Metastatic melanoma, a deadly form of skin cancer, often develops resistance to the BRAF inhibitor drug vemurafenib, highlighting the need for understanding the underlying mechanisms of resistance and exploring potential therapeutic strategies targeting integrins and TGF-β signalling. In this study, the role of integrins and TGF-β signalling in vemurafenib resistance in melanoma was investigated, and the potential of combining vemurafenib with cilengitide as a therapeutic strategy was investigated. In this study, it was found that the transcription of PAI1 and p21 was induced by acquired vemurafenib resistance, and ITGA5 levels were increased as a result of this resistance. The transcription of ITGA5 was mediated by the TGF-β pathway in the development of vemurafenib resistance. A synergistic effect on the proliferation of vemurafenib-resistant melanoma cells was observed with the combination therapy of vemurafenib and cilengitide. Additionally, this combination therapy significantly decreased invasion and colony formation in these resistant cells. In conclusion, it is suggested that targeting integrins and TGF-β signalling, specifically ITGA5, ITGB3, PAI1, and p21, may offer promising approaches to overcoming vemurafenib resistance, thereby improving outcomes for metastatic melanoma patients.
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  • 文章类型: Journal Article
    种系TP53致病变体可导致称为Li-Fraumeni(LFS)的癌症易感性综合征。影响其活性的变体可以驱动肿瘤发生改变p53途径,它们的鉴定对于评估个体风险至关重要。本研究探讨了TP53错义变体对其转录因子活性的功能影响。我们选择了七个TP53错义变体(c.129G>C,c.320A>G,c.417G>T,c.460G>A,C,522G>T,c.589G>A和c.997C>T)在有LFS风险的巴西家庭中确定。通过定点诱变产生变体并转染到SK-OV-3细胞中以评估其转录激活能力。变体K139N和V197M在TP53依赖性荧光素酶报告基因测定中显示显著降低的反式激活活性。此外,K139N对CDKN1A和MDM2的表达产生负面影响,并且在辐射诱导的DNA损伤后对GADD45A和PMAIP1的影响有限。变体V197M在所评估的所有靶基因中表现出功能影响和Ser15磷酸化的丧失。K139N和V197M变体在照射后呈现p21水平的降低。我们的数据显示K139N和V197M对p53功能有负面影响,支持将其分类为致病变体。这强调了对种系TP53错义变异进行功能研究的重要性,这些变异被分类为不确定意义的变异,以确保对LFS相关癌症风险的适当管理。
    Germline TP53 pathogenic variants can lead to a cancer susceptibility syndrome known as Li-Fraumeni (LFS). Variants affecting its activity can drive tumorigenesis altering p53 pathways and their identification is crucial for assessing individual risk. This study explored the functional impact of TP53 missense variants on its transcription factor activity. We selected seven TP53 missense variants (c.129G > C, c.320A > G, c.417G > T, c.460G > A, c,522G > T, c.589G > A and c.997C > T) identified in Brazilian families at-risk for LFS. Variants were created through site-directed mutagenesis and transfected into SK-OV-3 cells to assess their transcription activation capabilities. Variants K139N and V197M displayed significantly reduced transactivation activity in a TP53-dependent luciferase reporter assay. Additionally, K139N negatively impacted CDKN1A and MDM2 expression and had a limited effect on GADD45A and PMAIP1 upon irradiation-induced DNA damage. Variant V197M demonstrated functional impact in all target genes evaluated and loss of Ser15 phosphorylation. K139N and V197M variants presented a reduction of p21 levels after irradiation. Our data show that K139N and V197M negatively impact p53 functions, supporting their classification as pathogenic variants. This underscores the significance of conducting functional studies on germline TP53 missense variants classified as variants of uncertain significance to ensure proper management of LFS-related cancer risks.
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  • 文章类型: English Abstract
    本研究旨在探讨黄芩清热脱脂胶囊(HQC)通过调节p53/p21信号通路延缓骨关节炎(OA)大鼠软骨细胞衰老的机制。以单钠碘乙酸盐(MIA)联合外风湿热环境刺激诱导OA大鼠风湿热麻痹模型,分为正常(Con)组,OA模型(MIA)组,OA模型+风湿热刺激模型(MIA-M)组,MIA-M+HQC低剂量(MIA-M+HQC-L)组,中剂量(MIA-M+HQC-M)组,高剂量(MIA-M+HQC-H)组,和MIA-M+葡糖胺(MIA-M+GS)组。成功制备模型,灌胃30d。苏木精-伊红(HE)和番泻叶O固绿(SO)染色观察软骨病理变化。酶联免疫吸附试验(ELISA)检测白细胞介素(IL)-1β和IL-6的表达。流式细胞术(FCM)检测细胞凋亡和细胞周期。MMP13、ADAMTS-5、COlⅡ、RT-qPCR检测TGF-β。p53/p21、p16、Bax的蛋白表达,Westernblot检测Bcl-2。Con组大鼠关节软骨表面光滑,潮汐线很平稳。MIA和MIA-M组软骨层明显受损,软骨基质减少。以上情况在MIA-M组中更严重。HQC高剂量组和MIA-M+GS组软骨表面基本完整,分层明显。与MIA-M+HQC-H组相比,HQC低剂量和中剂量组的Mankin评分较高,MIA-M+GS组变化不明显。与Con组相比,MIA和MIA-M组软骨细胞G_1比例升高,S相和G_2相的比例明显下降。此外,细胞凋亡率增加。与MIA-M相比,HQC组以浓度依赖性方式抑制细胞凋亡并促进细胞增殖。与MIA-M+HQC-H组相比,HQC高剂量组比HQC中低剂量组的效果更显著,而在MIA-M+GS组中不显著。与Con组相比,IL-1β和IL-6在MIA和MIA-M组中升高,MMP13和ADAMTS-5的mRNA水平升高。p53,p21,p16和Bax蛋白升高,COLⅡ和TGF-β的mRNA水平降低。与MIA-M组相比,HQC和GS药物干预后IL-1β和IL-6下降,和MMP13和ADAMTS-5的mRNA水平,以及p53,p21,Bax,p16下降。此外,Bcl-2增加。MIA-M+HQC-H组这些指标的改善明显优于HQC低剂量和中剂量组,与MIA-M+GS组差异无统计学意义。HQC延缓MIA诱导的OA大鼠软骨细胞衰老,抑制炎症反应和细胞外基质(ECM)降解,其机制可能与抑制p53/p21通路有关。
    This study aims to investigate the mechanism of Huangqin Qingre Chubi Capsules(HQC) in delaying chondrocyte senescence of osteoarthritic(OA) rats by regulating the p53/p21 signaling pathway. Rheumatic fever paralysis models of OA rats were induced based on monosodiun iodoacetate(MIA) combined with external rheumatic fever environmental stimuli and divided into normal(Con) group, OA model(MIA) group, OA model+rheumatic fever stimulation model(MIA-M) group, MIA-M+HQC low-dose(MIA-M+HQC-L) group, medium-dose(MIA-M+HQC-M) group, and high-dose(MIA-M+HQC-H) group, and MIA-M+glucosamine(MIA-M+GS) group. The models were successfully prepared and administered by gavage for 30 d. The pathological changes of cartilage were observed by hematoxylin-eosin(HE) and Senna O solid green(SO) staining. The expression of interleukin(IL)-1β and IL-6 was detected by enzyme-linked immunosorbent assay(ELISA). Flow cytometry(FCM) was used to detect apoptosis and cell cycle. The mRNA expression of MMP13, ADAMTS-5, COLⅡ, and TGF-β was detected by RT-qPCR. The protein expression of p53/p21, p16, Bax, and Bcl-2 was detected by Western blot. The articular cartilage surface of rats in the Con group was smooth, and the tide line was smooth. The cartilage layer of MIA and MIA-M groups was obviously damaged, and the cartilage matrix was reduced. The above conditions were more severe in the MIA-M group. The cartilage surface of the HQC high-dose group and MIA-M+GS group was basically intact with clear delamination. Compared with the MIA-M+HQC-H group, Mankin\'s score was higher in the HQC low-dose and medium-dose groups, and the change was not obvious in the MIA-M+GS group. Compared with the Con group, the proportion of chondrocytes G_1 was elevated in the MIA and MIA-M groups, and the proportion of the S phase and G_2 phase was significantly decreased. In addition, the apoptosis rate was increased. Compared with MIA-M, HQC groups inhibited apoptosis and promoted cell proliferation in a concentration-dependent manner. Compared with the MIA-M+HQC-H group, the effect was more significant in the HQC high-dose group than in the HQC medium-low dose, while it was not significant in the MIA-M+GS group. Compared with the Con group, IL-1β and IL-6 were elevated in the MIA and MIA-M groups, and mRNA levels of MMP13 and ADAMTS-5 were elevated. p53, p21, p16, and Bax protein were elevated, and mRNA levels of COLⅡ and TGF-β were decreased. Compared with the MIA-M group, IL-1β and IL-6 decreased after drug interventions of HQC and GS, and mRNA levels of MMP13 and ADAMTS-5, as well as protein levels of p53, p21, Bax, and p16 decreased. In addition, Bcl-2 increased. The improvement of these indexes was significantly better in the MIA-M+HQC-H group than in the HQC low-dose and medium-dose groups, and the difference with the MIA-M+GS group was not significant. HQC delayed MIA-induced chondrocyte senescence in OA rats, inhibited inflammatory response and extracellular matrix(ECM) degradation, and its mechanism may be related to the inhibition of the p53/p21 pathway.
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  • 文章类型: Journal Article
    本研究旨在评估口服避孕药(OC)的使用效果,Khat咀嚼,以及它们对端粒酶水平和抑癌基因的联合作用,p53和p21在乳腺癌(BC)患者和正常志愿者中的表达。140名25-40岁的也门妇女入学,60例新诊断的治疗前的BC患者,和80个对照对象。收集静脉血(5ml),结果显示BC患者端粒酶水平明显升高,p53和p21与对照组比较。对照组使用OC显着提高了端粒酶,但对BC患者没有影响;而BC患者中p53和p21显着增加。另一方面,在对照组和BC患者中咀嚼Khat显着增加p53,而BC患者p21显著升高。联合使用OC和khat咀嚼可显著增加对照组的端粒酶和p53,并且在BC患者中p53和p21明显增加。端粒酶被证明是BC的危险因素(OR4.4),在正常受试者中,使用OC是端粒酶升高的高风险因素(OR27.8)。相比之下,Khat咀嚼被证明是保护性的(OR0.142),OCs和khat咀嚼的联合使用使端粒酶的危险因素从OR27.8降至2.1。
    This study aimed to evaluate the effects of oral contraceptive (OC) use, khat chewing, and their combined effect on telomerase level and tumor suppressor genes, p53 and p21 in breast cancer (BC) patients and normal volunteers. 140 Yemeni women aged 25-40 years old enrolled, 60 newly diagnosed pretreated BC patients, and 80 control subjects. Venous blood (5 ml) was collected and the results showed BC patients to have significantly raised levels of telomerase, p53, and p21 compared to the control group. The use of OCs significantly raised telomerase in control group with no effect in BC patients; whereas p53 and p21 were significantly increased in BC patients. On the other hand, khat chewing significantly increased p53 in controls and BC patients, whereas p21 was significantly raised in BC patients. The combined use of OCs and khat chewing significantly increased telomerase and p53 in control group, and significantly increased p53 and p21 in BC patients. Telomerase was shown to be a risk factor (OR 4.4) for BC, and the use of OCs was a high-risk factor for increasing telomerase (OR 27.8) in normal subjects. In contrast, khat chewing was shown to be protective (OR 0.142), and the combined use of OCs and khat chewing decreased the risk factor of telomerase from OR 27.8 to 2.1.
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  • 文章类型: Journal Article
    背景:生长停滞和DNA损伤诱导型45(Gadd45)基因与各种中枢神经系统(CNS)功能有关,正常和病理,包括衰老,记忆,和神经退行性疾病。在这项研究中,我们检测了Gadd45A缺失是否触发了与神经退行性疾病(包括阿尔茨海默病(AD))相关的通路.
    方法:利用AD相关海马样本的转录组数据,我们确定Gadd45A是自噬的关键调节因子。综合分析,包括基因本体富集和蛋白质-蛋白质相互作用网络评估,强调Cdkn1A是Gadd45A的重要下游目标。实验验证证实了Gadd45A在调节海马细胞中Cdkn1A表达和自噬水平中的作用。我们还研究了自噬对海马功能和促炎细胞因子分泌的影响。此外,采用小鼠模型来验证Gadd45A在神经炎症和AD病理学中的重要性。
    结果:我们的研究确定了20个与AD相关的自噬调节因子,随着Gadd45A成为关键监管机构。实验结果表明,Gadd45A通过减少Cdkn1A的表达和抑制自噬活性来影响海马细胞的命运。野生型(WT)和Gadd45A敲除(Gadd45A-/-)小鼠之间的比较显示,Gadd45A-/-小鼠表现出明显的认知障碍,包括工作和空间记忆的缺陷,Tau过度磷酸化增加,海马中与Tau磷酸化有关的激酶水平升高。此外,Gadd45A-/-小鼠显示出脑中促炎细胞因子的显著增加和自噬标志物的减少。Gadd45A-/-小鼠的神经营养蛋白水平和树突棘长度也降低,可能导致观察到的认知缺陷。
    结论:这些发现支持Gadd45A基因直接参与AD发病机制,增强Gadd45A的表达可能代表了治疗AD的有希望的治疗策略。
    BACKGROUND: The growth arrest and DNA damage-inducible 45 (Gadd45) gene has been implicated in various central nervous system (CNS) functions, both normal and pathological, including aging, memory, and neurodegenerative diseases. In this study, we examined whether Gadd45A deletion triggers pathways associated with neurodegenerative diseases including Alzheimer\'s disease (AD).
    METHODS: Utilizing transcriptome data from AD-associated hippocampus samples, we identified Gadd45A as a pivotal regulator of autophagy. Comprehensive analyses, including Gene Ontology enrichment and protein-protein interaction network assessments, highlighted Cdkn1A as a significant downstream target of Gadd45A. Experimental validation confirmed Gadd45A\'s role in modulating Cdkn1A expression and autophagy levels in hippocampal cells. We also examined the effects of autophagy on hippocampal functions and proinflammatory cytokine secretion. Additionally, a murine model was employed to validate the importance of Gadd45A in neuroinflammation and AD pathology.
    RESULTS: Our study identified 20 autophagy regulatory factors associated with AD, with Gadd45A emerging as a critical regulator. Experimental findings demonstrated that Gadd45A influences hippocampal cell fate by reducing Cdkn1A expression and suppressing autophagic activity. Comparisons between wild-type (WT) and Gadd45A knockout (Gadd45A-/-) mice revealed that Gadd45A-/- mice exhibited significant cognitive impairments, including deficits in working and spatial memory, increased Tau hyperphosphorylation, and elevated levels of kinases involved in Tau phosphorylation in the hippocampus. Additionally, Gadd45A-/- mice showed significant increases in pro-inflammatory cytokines and decreases autophagy markers in the brain. Neurotrophin levels and dendritic spine length were also reduced in Gadd45A-/- mice, likely contributing to the observed cognitive deficits.
    CONCLUSIONS: These findings support the direct involvement of the Gadd45A gene in AD pathogenesis, and enhancing the expression of Gadd45A may represent a promising therapeutic strategy for the treatment of AD.
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  • 文章类型: Journal Article
    最近的研究强调了环状RNA(circularRNAs)在各种癌症中的重要性,包括神经母细胞瘤(NB)。具体来说,Circ-SHPRH,一个独特的循环,已揭示通过隔离miRNA或产生SHPRH-146aa蛋白来抑制肿瘤生长。探讨circ-SHPRH参与NB及其在基因治疗中的潜在应用,本研究检测了94个NB组织和细胞系中的circ-SHPRH表达(SK-N-BE(2),SH-SY5Y)使用实时PCR和荧光原位杂交(FISH)。功能分析包括NB细胞系中的过表达和敲低实验,以及体内研究,进行了。RNA-seq分析显示circ-SHPRH与P21(CDKN1A)途径之间存在相关性,一个关键的细胞周期调节剂。通过PCR和其他技术验证证实circ-SHPRH上调P21表达。此外,通过SHPRH-146aa表达分析证实了circ-SHPRH在P21-CDK通路中的调节作用.值得注意的是,腺病毒介导的circ-SHPRH过表达可有效抑制NSG小鼠中NB肿瘤的生长,而联合circ-SHPRH和依维莫司显示出治疗NB的潜力。这项研究阐明了circ-SHPRH在NB中的显着意义及其在基因治疗中的前瞻性用途。从而为创新的治疗方法铺平道路。
    Recent research has underscored the significance of circular RNAs (circRNAs) in various cancers, including neuroblastoma (NB). Specifically, circ-SHPRH, a unique circRNA, has been revealed to inhibit tumor growth by sequestering miRNAs or producing the SHPRH-146aa protein. To explore circ-SHPRH\'s involvement in NB and its potential application in gene therapy, this study examined circ-SHPRH expression in 94 NB tissues and cell lines (SK-N-BE(2), SH-SY5Y) using real-time PCR and fluorescence in situ hybridization (FISH). Functional assays encompassing both overexpression and knockdown experiments in NB cell lines, as well as in vivo investigations, were conducted. RNA-seq analysis revealed a correlation between circ-SHPRH and the pathway of P21 (CDKN1A), a pivotal cell cycle regulator. Validation through PCR and other techniques confirmed that circ-SHPRH upregulated P21 expression. Furthermore, the regulatory role of circ-SHPRH in the P21-CDK pathway was corroborated through SHPRH-146aa expression analysis. Notably, adenovirus-mediated circ-SHPRH overexpression effectively curbed NB tumor growth in NSG mice, while combining circ-SHPRH with everolimus exhibited potential for NB treatment. This study elucidates the remarkable significance of circ-SHPRH in NB and its prospective utility in gene therapy, thereby paving the way for innovative therapeutic approaches.
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  • 文章类型: Journal Article
    虾青素(3,3'-二羟基-β,β-胡萝卜素-4,4'-二酮;AXT)是在微藻中发现的叶黄素β-类胡萝卜素,海鲜,真菌,复杂的植物,火烈鸟,还有鹌鹑.众所周知,AXT作为具有抗氧化和抗肿瘤特性的药物发挥作用。此外,多项研究报道该试剂具有抗炎和神经保护作用。最近,发现AXT充当过氧化物酶体增殖物激活受体γ(PPARγ)调节剂。探讨AXT对人乳腺癌细胞株MCF-7的作用,用各种浓度的AXT处理细胞。该处理以剂量依赖性方式诱导细胞数量的减少。此外,AXT治疗可增加膜联蛋白V阳性细胞.这些结果表明,通过AXT的处理在肿瘤细胞中诱导凋亡。为了阐明细胞凋亡和p53之间的联系,评估了p53和p21蛋白的水平。因此,观察到p53和p21的表达与AXT处理的浓度成比例地增加。这些发现表明AXT诱导的MCF-7细胞凋亡通过p53依赖性途径起作用。这意味着AXT可能在未来的乳腺癌治疗中发挥有益的作用。因此,我们的研究结果将为未来的癌症挑战提供方向.
    Astaxanthin (3,3\'-dihydroxy-β,β-carotene-4,4\'-dione; AXT) is a xanthophyll β-carotenoid found in microalgae, seafood, fungi, complex plants, flamingos, and quail. It is well known that AXT plays a role as a drug with antioxidant and antitumor properties. Furthermore, several studies have reported that the reagent shows anti-inflammatory and neuroprotective effects. Recently, it was found that AXT acts as a peroxisome proliferator-activated receptor γ (PPARγ) modulator. To investigate the effect of AXT on MCF-7 cells (a human breast cancer cell line), the cells were treated with various concentrations of AXT. The treatment induced the decrease in cell number in a dose-dependent manner. Additionally, the Annexin V-positive cells were increased by the AXT treatment. These results indicated that apoptosis was induced in the tumor cells through the treatment of AXT. To elucidate the connection between apoptosis and p53, the levels of p53 and p21 proteins were assessed. Consequently, it was observed that the expression of p53 and p21 increased proportionally to the concentration of the AXT treatment. These findings suggest that the apoptosis of MCF-7 cells induced by AXT operates through a p53-dependent pathway, implying that AXT could potentially have a beneficial role in future breast cancer treatments. Thus, our results will provide a direction for future cancer challenges.
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  • 文章类型: Journal Article
    表观遗传变化在癌症中很常见,包括异常的DNA甲基化和组蛋白修饰。包括乙酰化或甲基化。启动子区域的DNA甲基化和组蛋白脱乙酰通常伴随着基因沉默,并可能导致癌细胞中肿瘤抑制因子的抑制。据报道,表观遗传途径之间的相互作用可用于更有效地靶向侵袭性癌细胞。特别是那些目前的治疗通常失败,比如胰腺癌。在这项研究中,我们探索了将DNA去甲基化剂5-AZA与HDAC抑制剂SAHA联合治疗胰腺癌细胞系的可能性,专注于mutp53的乙酰化及其稳定性的后果,以及该蛋白与c-myc和BRCA-1的相互作用,这些是癌症生存的关键分子。获得的结果表明,SAHA/5-AZA组合比单一治疗更有效地促进mutp53的降解,上调p21并下调c-Myc和BRCA-1,从而增加胰腺癌细胞的DNA损伤和细胞毒性。
    Epigenetic changes are common in cancer and include aberrant DNA methylation and histone modifications, including both acetylation or methylation. DNA methylation in the promoter regions and histone deacetylation are usually accompanied by gene silencing, and may lead to the suppression of tumor suppressors in cancer cells. An interaction between epigenetic pathways has been reported that could be exploited to more efficiently target aggressive cancer cells, particularly those against which current treatments usually fail, such as pancreatic cancer. In this study, we explored the possibility to combine the DNA demethylating agent 5-AZA with HDAC inhibitor SAHA to treat pancreatic cancer cell lines, focusing on the acetylation of mutp53 and the consequences on its stability, as well as on the interaction of this protein with c-myc and BRCA-1, key molecules in cancer survival. The results obtained suggest that SAHA/5-AZA combination was more effective than single treatments to promote the degradation of mutp53, to upregulate p21 and downregulate c-Myc and BRCA-1, thus increasing DNA damage and cytotoxicity in pancreatic cancer cells.
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  • 文章类型: Journal Article
    衰老是细胞周期的不可逆停滞,其特征在于衰老标记如p16,p21和KI-67。不同衰老相关表型的表征需要选择最相关的衰老标记以定义可靠的细胞计数方法。质谱细胞计数(也称为飞行时间细胞计数,CyTOF)可以在单细胞水平上监测多达40种不同的细胞标志物,并且有可能整合多种衰老和其他表型标志物,以识别复杂组织如骨骼肌中的衰老细胞,与传统的批量测量和基于流式细胞术的测量相比,具有更高的准确性和可扩展性。本文介绍了一种基于聚类的假定衰老细胞检测分析框架,异常检测,和布尔逻辑的异常值。结果表明,该管道可以鉴定骨骼肌中推定的衰老细胞,具有良好建立的标记,如p21和潜在的标记,如GAPDH。还发现,骨骼肌中假定的衰老细胞的异质性可以部分地通过其细胞类型来解释。此外,自噬相关蛋白ATG4A,LRRK2和GLB1被鉴定为预测假定的衰老群体的重要蛋白。提供对自噬与衰老之间关联的见解。观察到性别不影响假定的衰老细胞在总细胞中的比例。然而,年龄确实有影响,在纤维/成脂祖细胞(FAP)中观察到更高的比例,卫星细胞,来自老年小鼠的M1和M2巨噬细胞。此外,衰老相关蛋白的表达水平不同,老年小鼠的假定衰老细胞具有较高水平的p21和GAPDH,而年轻小鼠的假定衰老细胞具有较高水平的IL-6。总的来说,分析框架优先考虑多种衰老相关蛋白,以表征来自不同细胞类型组织的假定衰老细胞.
    Senescence is an irreversible arrest of the cell cycle that can be characterized by markers of senescence such as p16, p21, and KI-67. The characterization of different senescence-associated phenotypes requires selection of the most relevant senescence markers to define reliable cytometric methodologies. Mass cytometry (a.k.a. Cytometry by time of flight, CyTOF) can monitor up to 40 different cell markers at the single-cell level and has the potential to integrate multiple senescence and other phenotypic markers to identify senescent cells within a complex tissue such as skeletal muscle, with greater accuracy and scalability than traditional bulk measurements and flow cytometry-based measurements. This article introduces an analysis framework for detecting putative senescent cells based on clustering, outlier detection, and Boolean logic for outliers. Results show that the pipeline can identify putative senescent cells in skeletal muscle with well-established markers such as p21 and potential markers such as GAPDH. It was also found that heterogeneity of putative senescent cells in skeletal muscle can partly be explained by their cell type. Additionally, autophagy-related proteins ATG4A, LRRK2, and GLB1 were identified as important proteins in predicting the putative senescent population, providing insights into the association between autophagy and senescence. It was observed that sex did not affect the proportion of putative senescent cells among total cells. However, age did have an effect, with a higher proportion observed in fibro/adipogenic progenitors (FAPs), satellite cells, M1 and M2 macrophages from old mice. Moreover, putative senescent cells from muscle of old and young mice show different expression levels of senescence-related proteins, with putative senescent cells of old mice having higher levels of p21 and GAPDH, whereas putative senescent cells of young mice had higher levels of IL-6. Overall, the analysis framework prioritizes multiple senescence-associated proteins to characterize putative senescent cells sourced from tissue made of different cell types.
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