ASF

ASF
  • 文章类型: Journal Article
    非洲猪瘟病毒(ASFV)是猪中通常致命的疾病,对猪的牲畜和猪的生产者构成威胁。其复杂的基因组包含150多个编码区,由于缺乏有关病毒蛋白质功能和病毒蛋白质之间以及病毒与宿主蛋白质之间的蛋白质-蛋白质相互作用的基本知识,因此开发针对该病毒的有效疫苗仍然是一项挑战。在这项工作中,我们使用人工智能驱动的蛋白质结构预测工具鉴定了ASFV-ASFV蛋白质-蛋白质相互作用(PPIs).我们将PPI鉴定工作流程以痘苗病毒为基准,一种被广泛研究的核质大DNA病毒,并发现它可以识别金标准的PPI,这些PPI已经在全基因组计算筛选中在体外得到了验证。我们将此工作流程应用于超过18,000个ASFV蛋白的成对组合,并能够鉴定出17个新型PPI,其中许多已经证实了它们的蛋白质-蛋白质相互作用的实验或生物信息学证据,进一步验证其相关性。两种蛋白质-蛋白质相互作用,I267L和I8L,I267L__I8L,和B175L和DP79L,B175L__DP79L,是涉及已知调节宿主免疫应答的病毒蛋白的新型PPI。
    The African swine fever virus (ASFV) is an often deadly disease in swine and poses a threat to swine livestock and swine producers. With its complex genome containing more than 150 coding regions, developing effective vaccines for this virus remains a challenge due to a lack of basic knowledge about viral protein function and protein-protein interactions between viral proteins and between viral and host proteins. In this work, we identified ASFV-ASFV protein-protein interactions (PPIs) using artificial intelligence-powered protein structure prediction tools. We benchmarked our PPI identification workflow on the Vaccinia virus, a widely studied nucleocytoplasmic large DNA virus, and found that it could identify gold-standard PPIs that have been validated in vitro in a genome-wide computational screening. We applied this workflow to more than 18,000 pairwise combinations of ASFV proteins and were able to identify seventeen novel PPIs, many of which have corroborating experimental or bioinformatic evidence for their protein-protein interactions, further validating their relevance. Two protein-protein interactions, I267L and I8L, I267L__I8L, and B175L and DP79L, B175L__DP79L, are novel PPIs involving viral proteins known to modulate host immune response.
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  • 文章类型: Journal Article
    非洲猪瘟病毒(ASFV)是影响野生和家猪的传染病的病原体。B169L蛋白的功能,作为潜在的完整结构膜蛋白,仍有待实验表征。使用最先进的生物信息学工具,我们在这里证实了早期的预测,表明存在完整的膜螺旋发夹,并进一步建议将这种蛋白质锚定到内质网膜上,两个末端都面向细胞器的内腔。我们的进化分析证实了在自然界中B169L进化过程中,纯化选择在保存已鉴定域中的重要性。此外,我们讨论了这种发夹跨膜结构域(HTMD)作为IIA类病毒传播蛋白的可能功能。在不存在信号肽的情况下GFP融合蛋白的表达支持B169L作为III型膜蛋白插入ER中并在其中形成寡聚体。跨越B169LHTMD的重叠肽被重建为ER样膜,并通过红外光谱分析所采用的结构。与预测一致,B169L跨膜序列在脂质双层中采用α-螺旋构象。此外,单囊泡通透性试验证明了B169L跨膜螺旋在ER样膜中组装溶解孔,通过平面双层中的离子通道活性测量证实的容量。强调这些意见的相关性,在来自EP84R的跨膜螺旋的情况下没有观察到孔形成活性,另一种ASFV蛋白预测通过α-螺旋HTMD锚定到膜上。总的来说,我们的结果支持对B169LHTMD的病毒传播蛋白样功能的预测。重要的非洲猪瘟(ASF),一种影响家猪的毁灭性疾病,在欧亚大陆广泛传播,在猪肉行业产生重大的经济问题。预防/治愈该疾病的方法主要限于关于由大型(160-170kba)病毒基因组编码的大多数基因的作用的有限信息。在这份报告中,我们提供了有关非洲猪瘟病毒(ASFV)基因B169L功能特征的实验数据。此处呈现的数据表明B169L基因编码具有病毒传播蛋白功能的必需膜相关蛋白。
    African swine fever virus (ASFV) is the causative agent of a contagious disease affecting wild and domestic swine. The function of B169L protein, as a potential integral structural membrane protein, remains to be experimentally characterized. Using state-of-the-art bioinformatics tools, we confirm here earlier predictions indicating the presence of an integral membrane helical hairpin, and further suggest anchoring of this protein to the ER membrane, with both terminal ends facing the lumen of the organelle. Our evolutionary analysis confirmed the importance of purifying selection in the preservation of the identified domains during the evolution of B169L in nature. Also, we address the possible function of this hairpin transmembrane domain (HTMD) as a class IIA viroporin. Expression of GFP fusion proteins in the absence of a signal peptide supported B169L insertion into the ER as a Type III membrane protein and the formation of oligomers therein. Overlapping peptides that spanned the B169L HTMD were reconstituted into ER-like membranes and the adopted structures analyzed by infrared spectroscopy. Consistent with the predictions, B169L transmembrane sequences adopted α-helical conformations in lipid bilayers. Moreover, single vesicle permeability assays demonstrated the assembly of lytic pores in ER-like membranes by B169L transmembrane helices, a capacity confirmed by ion-channel activity measurements in planar bilayers. Emphasizing the relevance of these observations, pore-forming activities were not observed in the case of transmembrane helices derived from EP84R, another ASFV protein predicted to anchor to membranes through a α-helical HTMD. Overall, our results support predictions of viroporin-like function for the B169L HTMD.IMPORTANCEAfrican swine fever (ASF), a devastating disease affecting domestic swine, is widely spread in Eurasia, producing significant economic problems in the pork industry. Approaches to prevent/cure the disease are mainly restricted to the limited information concerning the role of most of the genes encoded by the large (160-170 kba) virus genome. In this report, we present the experimental data on the functional characterization of the African swine fever virus (ASFV) gene B169L. Data presented here indicates that the B169L gene encodes for an essential membrane-associated protein with a viroporin function.
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  • 文章类型: Journal Article
    非洲猪瘟病毒(ASFV)是编码至少150种蛋白质的大型dsDNA病毒。ASFV的复杂性和缺乏效应免疫功能和保护性抗原的知识阻碍了安全有效的ASF疫苗的开发。在这项研究中,我们构建了四个表达单个ASFV基因B602L的Orf病毒重组载体,-CP204L,E184L,和-I73R(ORFVΔ121-ASFV-B602L,-CP204L,-E184L,和-I73R)。所有重组病毒在体外表达异源ASFV蛋白。然后,我们通过免疫四周大的仔猪来评估重组体的免疫原性。在两项独立的动物研究中,我们观察到针对由CP204L基因编码的ASFVp30的高抗体滴度。使用PepscanELISA,我们鉴定了位于p30暴露环区域的12个氨基酸长度的线性B细胞表位(肽15)作为免疫显性ASFV表位。此外,针对ASFVp30引发的抗体呈现抗体依赖性细胞毒性(ADCC)活性。这些结果强调了p30在针对ASFV引发的抗体应答中的作用,并突出了有助于p30特异性抗体应答的重要功能表位。
    African Swine Fever Virus (ASFV) is a large dsDNA virus that encodes at least 150 proteins. The complexity of ASFV and lack of knowledge of effector immune functions and protective antigens have hindered the development of safe and effective ASF vaccines. In this study, we constructed four Orf virus recombinant vectors expressing individual ASFV genes B602L, -CP204L, E184L, and -I73R (ORFVΔ121-ASFV-B602L, -CP204L, -E184L, and -I73R). All recombinant viruses expressed the heterologous ASFV proteins in vitro. We then evaluated the immunogenicity of the recombinants by immunizing four-week-old piglets. In two independent animal studies, we observed high antibody titers against ASFV p30, encoded by CP204L gene. Using Pepscan ELISA, we identified a linear B-cell epitope of 12 amino acids in length (Peptide 15) located in an exposed loop region of p30 as an immunodominant ASFV epitope. Additionally, antibodies elicited against ASFV p30 presented antibody-dependent cellular cytotoxicity (ADCC) activity. These results underscore the role of p30 on antibody responses elicited against ASFV and highlight an important functional epitope that contributes to p30-specific antibody responses.
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  • 文章类型: Journal Article
    人类的健康取决于食品安全,因此,关于农场动物的健康。关于猪疾病的最显著威胁之一是非洲猪瘟(ASF)。由猪圆环病毒(PCV)引起的感染代表了另一种重要的猪疾病。由于PCV2的普遍存在性质,在受ASFV影响的猪中检测到该病毒并不令人惊讶。然而,最近的数据表明PCV3和ASFV的合并感染也会发生。目前尚不清楚PCV感染是否在ASFV感染中起作用。这个问题需要进一步分析。这项研究的目的是评估波兰野猪种群中是否存在PCV3和PCV4(实时PCR)。分析是对波兰常规ASF监测收集的野猪样本进行的,2018年至2021年。通过扩展,将获得的数据与这些样品中ASFV的存在进行比较,因此,在波兰的自由放养Suidae中,以PCV携带者状态为由调查了ASFV感染的几率。此外,进行了PCV3测序和系统发育分析,基于全基因组和衣壳基因。在目前的研究中,我们证明了PCV3在波兰野猪种群中的高患病率;同时,未检测到PCV4。在波兰的自由放养Suidae中,以PCV3携带者状态为理由的ASFV感染的几率是其两倍以上。获得了10个PCV3全基因组序列,所有这些都属于进化枝3a。它们之间的相似性在98.78-99.80%的范围内。
    Human health is dependent on food safety and, therefore, on the health of farm animals. One of the most significant threats in regard to swine diseases is African swine fever (ASF). Infections caused by porcine circoviruses (PCVs) represent another important swine disease. Due to the ubiquitous nature of PCV2, it is not surprising that this virus has been detected in ASFV-affected pigs. However, recent data indicate that coinfection of PCV3 and ASFV also occurs. It is still unclear whether PCV infection plays a role in ASFV infection, and that subject requires further analysis. The aim of this study was to assess whether PCV3 and PCV4 are present in the wild boar population in Poland (real-time PCR). The analysis was performed on wild boar samples collected for routine ASF surveillance in Poland, between 2018 and 2021. By extension, the obtained data were compared in regard to ASFV presence in these samples, thus investigating the odds of ASFV infection on the grounds of the PCV carrier state in free-ranging Suidae in Poland. In addition, sequencing of PCV3 and phylogenetic analysis were performed, based on a full genome and a capsid gene. In the current study, we demonstrated the high prevalence of PCV3 in the wild boar population in Poland; meanwhile, PCV4 was not detected. The odds of ASFV infection on the grounds of the PCV3 carrier state in free-ranging Suidae in Poland was more than twice as high. Ten full genome sequences of PCV3 were obtained, all of them belonging to clade 3a. The similarity between them was in the range of 98.78-99.80%.
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  • 文章类型: Journal Article
    2023年,有14个成员国受到非洲猪瘟(ASF)的影响。包括出现ASF的克罗地亚和瑞典(仅野猪爆发),以及自2021年以来ASF重新出现的希腊。欧盟家猪ASF疫情比2022年增加5倍,达到与2019年类似的幅度。这主要是由于ASF在克罗地亚的引入和随后的传播以及在罗马尼亚的复兴所推动的,占欧盟疫情的96%。在所有国家,家猪中的ASF疫情显然都是季节性的,88%的疫情在7月至10月期间报告。大多数家猪中的ASF暴发是通过临床怀疑(94%)发现的,其次是从受影响的机构追查(3%),以及每周对机构内至少两只死猪进行测试(3%)。在野猪中,与2022年相比,欧盟通报的疫情数量增加了10%,各国之间差异很大.仅在波兰观察到冬季高峰,斯洛伐克和匈牙利。德国和匈牙利野猪的流行病学状况有所改善,疫情数量和死野猪PCR阳性样本比例的减少表明了这一点。总的来说,被动监测中发现31%的野猪尸体经PCR检测呈阳性,代表欧盟野猪ASF爆发的69%。相比之下,0.4%的被猎杀野猪检测呈阳性,占疫情的31%。尽管在新的国家引入了ASF,并且爆发次数增加,欧盟的禁区规模保持稳定,由于克罗地亚的疫情高度聚集,以及波兰限制区的减少,斯洛伐克和保加利亚(家猪),和匈牙利(野猪)。
    In 2023, 14 Member States were affected by African swine fever (ASF), including Croatia and Sweden where ASF emerged (wild boar outbreaks only) and Greece where ASF re-emerged after being free since 2021. The number of ASF outbreaks among domestic pigs in the EU was five times higher than in 2022, reaching a similar magnitude to that in 2019. This was predominantly driven by the introduction and subsequent spread of ASF in Croatia and its resurgence in Romania, representing 96% of the EU outbreaks. ASF outbreaks in domestic pigs were clearly seasonal in all countries, with 88% of outbreaks reported between July and October. Most of the ASF outbreaks among domestic pigs were detected through clinical suspicion (94%), followed by tracing from affected establishments (3%), and the weekly testing of at least two dead pigs in establishments (3%). In wild boar, a 10% increase in the number of notified outbreaks was observed in the EU in comparison with 2022, with considerable variations between countries. A winter peak was observed only in Poland, Slovakia and Hungary. The epidemiological situation in wild boar improved in Germany and Hungary, as suggested by the decrease in the number of outbreaks and in the proportions of PCR-positive samples from dead wild boar. Overall, 31% of wild boar carcasses found during passive surveillance tested positive by PCR, representing 69% of the ASF outbreaks in wild boar in the EU. In contrast, 0.4% of hunted wild boar tested positive, representing 31% of the outbreaks. Despite the introduction of ASF into new countries and the increase in the number of outbreaks, the size of restricted zones in the EU remained stable, due to the highly clustered outbreaks in Croatia, and the reduction of restricted zones in Poland, Slovakia and Bulgaria (in domestic pigs), and Hungary (in wild boar).
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  • 文章类型: Journal Article
    我们以前曾报道过,重组非洲猪瘟(ASF)疫苗候选物ASFV-G-Δ9GL/ΔUK可有效诱导受到力毒株格鲁吉亚2010(ASFV-G)攻击的家猪的保护。据报道,ASFV-G-Δ9GL/ΔUK诱导保护,而肌肉内(IM),以104HAD50或更高的剂量给药,预防感染同源ASFVg菌株的动物的ASF临床疾病。像从ASFV现场分离物中获得的其他重组疫苗候选物一样,ASFV-G-Δ9GL/ΔUK库存需要在猪巨噬细胞的原代培养物中产生,这构成了在工业水平上生产大型病毒库存的重要限制。这里,我们使用IPKM(永生化猪肾巨噬细胞)细胞描述ASFV-G-Δ9GL/ΔUK库存的发展,来源于猪巨噬细胞。我们表明,IPKM细胞中ASFV-G-Δ9GL/ΔUK的十次连续传代诱导了病毒基因组的微小变化。产生的病毒,ASFV-G-Δ9GL/ΔUKp10在猪巨噬细胞培养物中的复制水平与原始ASFV-G-Δ9GL/ΔUK(ASFV-G-Δ9GL/ΔUKp0)相似。在IM接种104或106HAD50的ASFV-G-Δ9GL/ΔUKp10的猪中评估了ASFV-G-Δ9GL/ΔUKp10的保护功效。虽然接种了104HAD50的动物对毒力亲本病毒ASFV-G的实验性感染具有部分保护作用,接种了106HAD50的人得到了完全保护.因此,正如最近报道的另一种ASF候选疫苗,ASFV-G-ΔI177L,IPKM细胞是产生仅在猪巨噬细胞中生长的疫苗株的储备的有效替代方案。
    We have previously reported that the recombinant African Swine Fever (ASF) vaccine candidate ASFV-G-Δ9GL/ΔUK efficiently induces protection in domestic pigs challenged with the virulent strain Georgia 2010 (ASFV-G). As reported, ASFV-G-Δ9GL/ΔUK induces protection, while intramuscularly (IM), administered at doses of 104 HAD50 or higher, prevents ASF clinical disease in animals infected with the homologous ASFV g strain. Like other recombinant vaccine candidates obtained from ASFV field isolates, ASFV-G-Δ9GL/ΔUK stocks need to be produced in primary cultures of swine macrophages, which constitutes an important limitation in the production of large virus stocks at the industrial level. Here, we describe the development of ASFV-G-Δ9GL/ΔUK stocks using IPKM (Immortalized Porcine Kidney Macrophage) cells, which are derived from swine macrophages. We show that ten successive passages of ASFV-G-Δ9GL/ΔUK in IPKM cells induced small changes in the virus genome. The produced virus, ASFV-G-Δ9GL/ΔUKp10, presented a similar level of replication in swine macrophages cultures to that of the original ASFV-G-Δ9GL/ΔUK (ASFV-G-Δ9GL/ΔUKp0). The protective efficacy of ASFV-G-Δ9GL/ΔUKp10 was evaluated in pigs that were IM-inoculated with either 104 or 106 HAD50 of ASFV-G-Δ9GL/ΔUKp10. While animals inoculated with 104 HAD50 present a partial protection against the experimental infection with the virulent parental virus ASFV-G, those inoculated with 106 HAD50 were completely protected. Therefore, as was just recently reported for another ASF vaccine candidate, ASFV-G-ΔI177L, IPKM cells are an effective alternative to produce stocks for vaccine strains which only grow in swine macrophages.
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  • 文章类型: Journal Article
    非洲猪瘟病毒自1982年以来在喀麦隆流行。这里,我们公布了喀麦隆/2016/C1,喀麦隆/2016/C5,喀麦隆/2017/C-A2,喀麦隆/2018/C02和喀麦隆/2018/CF3的序列,5个基因型1非洲猪瘟病毒基因组在2016年至2018年间从家猪中收集.
    African swine fever virus has been endemic in Cameroon since 1982. Here, we announce the sequences of Cameroon/2016/C1, Cameroon/2016/C5, Cameroon/2017/C-A2, Cameroon/2018/C02, and Cameroon/2018/CF3, five genotype 1 African swine fever virus genomes collected from domestic pigs between 2016 and 2018.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    历史上,非洲猪瘟病毒的基因分型基于B646L(p72)的部分测序。直到最近,确定基因型的差异数量不明确.该工具允许上传序列,并将报告其最接近的匹配及其可能的p72基因型。
    Historically, genotyping of African swine fever virus was based on partial sequencing of B646L (p72). Until recently, the number of differences that defined genotypes was ambiguous. This tool allows a sequence to be uploaded and will report its closest matches along with its likely p72 genotype.
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  • 文章类型: Journal Article
    (1)背景:非洲猪瘟(ASF)是一种高度传染性和致命的家猪和野猪出血性疾病,对欧盟养猪业造成重大经济损失。自2007年在格鲁吉亚检测到该病毒以来,非洲猪瘟的基因型II已在许多欧洲国家传播。在波兰,2014年2月17日在该国东部确认了ASF病毒的基因型II,似乎已从白俄罗斯传播到波兰.在过去的十年中,波兰尤其受到ASF流行病的影响,导致波兰猪种群大幅下降。野猪是非洲猪瘟病毒(ASFV)的主要宿主,但是人类活动,如运输和非法动物贸易,是这种疾病远距离传播的主要原因。(2)结论:在波兰ASF的九年中,通过对这些动物的被动和主动监视,已经采取了多种措施来防止病毒在野猪种群中的传播。关于养猪场,防止ASF传播的唯一有效措施是国家当局有效执行生物安全标准和农民遵守这些标准。
    (1) Background: African swine fever (ASF) is a highly contagious and fatal haemorrhagic disease in domestic pigs and wild boars, causing significant economic loss to the swine industry in the European Union. The genotype II of African swine fever has spread in many European countries since the virus was detected in 2007 in Georgia. In Poland, the genotype II of the ASF virus was confirmed on 17 February 2014 in the eastern part of the country and appeared to have been transmitted to Poland from Belarus. Poland has been particularly affected by ASF epidemics in the last decade, resulting in a significant decline in the Polish pig population. Wild boars are the main reservoir of the African swine fever virus (ASFV), but human activities such as transportation and illegal animal trade are the primary reasons for the long-distance transmission of the disease. (2) Conclusions: During the nine years of ASF in Poland, multiple measures have been taken to prevent the spread of the virus among the wild boar population via the passive and active surveillance of these animals. With regard to pig farms, the only effective measure for preventing the spread of ASF is the efficient enforcement by state authorities of the biosecurity standards and the farmers\' compliance with them.
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