■结节病是一种不明原因的多系统炎症性疾病,具有从单个器官非干酪样肉芽肿部位到慢性全身性炎症和纤维化的异质性临床表现。基因表达研究表明,结节病的发病机制涉及几个基因和途径。然而,由于研究设计和可变统计方法的差异,结果通常不可重复或不一致。因此,结节病基因表达数据集的荟萃分析对于可靠地建立差异表达基因和信号通路非常重要。
■我们对22项已发表的结节病基因表达研究进行了荟萃分析。使用相同的统计截止值系统地分析数据集。通过使用Edgington's方法汇集p值鉴定差异表达的基因,并使用IngenuityPathwayAnalysis软件分析通路。
■鉴定了新的和众所周知的基因的一致和显著的特征,这些共同涉及结节病中I型和II型干扰素介导的信号通路。电脑功能分析显示真核起始因子2信号的一致下调,而干扰素和转录因子STAT1等细胞因子上调。此外,我们分析了受影响的组织,以检测可能与肉芽肿生物学有关的差异表达基因。这表明基质金属肽酶12在受影响的组织中唯一上调,提示在疾病发病机制中的关键作用。
■我们的分析提供了结节病中的简明基因标记,并扩展了我们对发病机理的认识。我们的结果对于改进当前的诊断方法和监测策略以及靶向疗法的开发具有重要意义。
UNASSIGNED: Sarcoidosis is a multi-system inflammatory disease of unknown origin with heterogeneous clinical manifestations varying from a single organ non-caseating granuloma site to chronic systemic inflammation and fibrosis. Gene expression studies have suggested several genes and pathways implicated in the pathogenesis of
sarcoidosis, however, due to differences in study design and variable statistical approaches, results were frequently not reproducible or concordant. Therefore, meta-analysis of
sarcoidosis gene-expression datasets is of great importance to robustly establish differentially expressed genes and signalling pathways.
UNASSIGNED: We performed meta-analysis on 22 published gene-expression studies on
sarcoidosis. Datasets were analysed systematically using same statistical cut-offs. Differentially expressed genes were identified by pooling of p-values using Edgington\'s method and analysed for pathways using Ingenuity Pathway Analysis software.
UNASSIGNED: A consistent and significant signature of novel and well-known genes was identified, those collectively implicated both type I and type II interferon mediated signalling pathways in sarcoidosis. In silico functional analysis showed consistent downregulation of eukaryotic initiation factor 2 signalling, whereas cytokines like interferons and transcription factor STAT1 were upregulated. Furthermore, we analysed affected tissues to detect differentially expressed genes likely to be involved in granuloma biology. This revealed that matrix metallopeptidase 12 was exclusively upregulated in affected tissues, suggesting a crucial role in disease pathogenesis.
UNASSIGNED: Our analysis provides a concise gene signature in
sarcoidosis and expands our knowledge about the pathogenesis. Our results are of importance to improve current diagnostic approaches and monitoring strategies as well as in the development of targeted therapeutics.