insect vectors

昆虫载体
  • 文章类型: Journal Article
    首次对Velho港的城市森林残留物进行了昆虫学调查,龙多尼亚州,巴西,探索利什曼原虫的传播动力学。在十个地点进行了沙蝇收集,包括树冠和地层,2021年10月至12月。共收集沙蝇1671只,代表12属42种。Antunesi神经衰弱症(n=384)和davisi精神多巴(n=111)是最丰富的物种。针对V7V8区域(18S基因)的分子分析揭示了在黄叶双色菌的雌性中存在与婴儿利什曼原虫100%相同的序列(1),AntunesiNyssomyia复合体(6),umbratilis失眠(1),失眠。(1),Psychodopygusayrozai(1),PS.davisi(3),paraensis(1),和sordelliiSciopemyia(1)。在AntunesiNyssomyia复合体的两个样本中发现了100%类似于锥虫的序列,和两个Sc样本。sordellii与锥虫具有100%的同一性。应变,先前在朗多尼亚的同一种沙蝇中发现。Cytb片段的测序表明智人,Dasypusnovemcinctus和Tamanduatetradactyla作为不同沙蝇的血液来源。值得注意的是,在城市森林碎片中收集的沙蝇中鉴定出类似于婴儿乳球菌的序列,与人类内脏利什曼病的本地本地病例的近期发生有关。然而,进一步的研究是必要的,以确定存在的宿主/水库和评估的风险,L。
    Entomological investigations were conducted for the first time in urban forest remnants of Porto Velho, state of Rondônia, Brazil, to explore the transmission dynamics of Leishmania. Sand fly collections were carried out at ten sites, encompassing both canopy and ground strata, from October to December 2021. A total of 1,671 sand flies were collected, representing 42 species within 12 genera. Nyssomyia Antunesi (n = 384) and Psychodopygus davisi (n = 111) were the most abundant species. Molecular analyses targeting the V7V8 region (18S gene) unveiled the presence of sequences 100% identical to Leishmania infantum in females of Bichromomyia flaviscutellata (1), Nyssomyia Antunesi complex (6), Nyssomyia umbratilis (1), Nyssomyia sp. (1), Psychodopygus ayrozai (1), Ps. davisi (3), Psychodopygus paraensis (1), and Sciopemyia sordellii (1). Sequences 100% similar to Trypanosoma minasense were found in two samples of the Nyssomyia Antunesi complex, and two samples of Sc. sordellii presented 100% identity to a Trypanosoma sp. strain, previously identified in this same sand fly in Rondônia. Sequencing of Cytb fragment suggested Homo sapiens, Dasypus novemcinctus and Tamandua tetradactyla as the blood source for distinct sand flies. The identification of sequences similar to L. infantum in sand flies collected in urban forest fragments is noteworthy, correlating with the recent local and regional occurrence of autochthonous cases of human visceral leishmaniasis. However, further studies are imperative to ascertain the presence of hosts/reservoirs and evaluate the risk of L. infantum transmission to humans.
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  • 文章类型: Journal Article
    背景:Triatomasordida的住所是南美的公共卫生问题。本研究旨在评估索迪达毛虫的国内和周边种群的形态变化。
    方法:安装hemelytra标本,数字化,并进行几何形态分析。
    结果:在房屋中捕获的标本比在围食类动物中捕获的标本小。与女性家庭人群相比,在女性包虫人群中观察到了较大的尺寸减小效应。
    结论:T.sordida房屋种群小于周边种群。机翼几何形态测量法可以用作指示索迪达氏杆菌住所的工具。
    BACKGROUND: Domiciliation by Triatoma sordida is a public health concern in South America. This study aimed to evaluate the morphometric changes in the domestic and peridomestic populations of T. sordida.
    METHODS: Specimen hemelytra were mounted, digitized, and processed for geometric morphometric analyses.
    RESULTS: The specimens captured in houses were smaller than those captured in peridomiciles. A large size reduction effect was observed in female peridomicile populations compared with female house populations.
    CONCLUSIONS: T. sordida house populations were smaller than peridomestic populations. Wing geometric morphometry can be used as a tool to indicate T. sordida domiciliation.
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  • 文章类型: Journal Article
    利什曼原虫物种,动体寄生虫的成员,导致利什曼病,一种被忽视的热带病,全世界数百万人。利什曼原虫具有复杂的生命周期,具有多种发育形式,因为它在沙蝇媒介和哺乳动物宿主之间循环;了解它们的生命周期对于了解疾病传播至关重要。生命周期的关键阶段之一是haptomonad形式,它通过鞭毛附着在昆虫组织上。这种附着力,在动质体寄生虫中保守,与在其生命周期中具有重要功能有关,因此与疾病传播有关。这里,我们发现了动体-昆虫粘附蛋白(KIAP),位于附着的利什曼原虫鞭毛中。这些KIAP的缺失会损害体外细胞粘附,并防止利什曼原虫在沙蝇中的造口阀定殖,而不影响细胞生长。此外,寄生虫在沙蝇中的粘附力的丧失导致对蝇的生理变化减少,没有可见的造口阀损伤和减少中肠肿胀。这些结果为全面了解利什曼原虫的生命周期提供了重要的见解,这对于制定阻断传输的策略至关重要。
    Leishmania species, members of the kinetoplastid parasites, cause leishmaniasis, a neglected tropical disease, in millions of people worldwide. Leishmania has a complex life cycle with multiple developmental forms, as it cycles between a sand fly vector and a mammalian host; understanding their life cycle is critical to understanding disease spread. One of the key life cycle stages is the haptomonad form, which attaches to insect tissues through its flagellum. This adhesion, conserved across kinetoplastid parasites, is implicated in having an important function within their life cycles and hence in disease transmission. Here, we discover the kinetoplastid-insect adhesion proteins (KIAPs), which localise in the attached Leishmania flagellum. Deletion of these KIAPs impairs cell adhesion in vitro and prevents Leishmania from colonising the stomodeal valve in the sand fly, without affecting cell growth. Additionally, loss of parasite adhesion in the sand fly results in reduced physiological changes to the fly, with no observable damage of the stomodeal valve and reduced midgut swelling. These results provide important insights into a comprehensive understanding of the Leishmania life cycle, which will be critical for developing transmission-blocking strategies.
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  • 文章类型: Journal Article
    背景:Culicoidesmides在西班牙得到了很好的研究,特别是在过去的20年里,主要是因为它们作为影响牲畜的虫媒病毒病的载体。大多数关于Culicoides的研究都是在养殖环境中使用吸力光阱进行的,但是采用替代诱捕技术或关注自然栖息地的研究很少。
    方法:在本研究中,我们分析了2023年在安达卢西亚西部(西班牙南部)的476个地点捕获的Culicoides,使用不同生态系统中的二氧化碳诱饵生物(BG)-哨兵陷阱。
    结果:我们收集了属于23种的3,084只Culicoidesmides(3060只雌性和24只雄性),包括新物种Culicoidesgrandifoveasp.11月。也是欧洲古利科德的第一个记录。用形态学和分子方法描述了这两个物种,并记录了有关空间分布的详细数据。新物种与来自摩洛哥的身份不明的Culicoides序列(相似性为92.6%)和Culicoideskurensis显示出密切的系统发育关系。Culicoidesimicola是最丰富的物种(17.4%),其次是Culicoidesgrandifoveasp。11月。(14.6%)和库利科德(11.9%)。有趣的是,Culicoidesmontanus是捕获的过时和pulicaris物种复合体的唯一物种,代表该物种在西班牙南部的第一个记录。该地区总共报告了53种有效的库利科伊德物种,文献记录中已经报道了48例,本研究中增加了5例。还提供了有关最常见的Culicoides物种飞行时间的信息。
    结论:据我们所知,我们的研究代表了在非农田栖息地上使用二氧化碳诱饵收集Culicoides的最全面的努力。我们的数据表明,与常规使用的光陷阱相比,使用二氧化碳陷阱对Culicoides社区提供了完全不同的视角,包括以前未记录的物种的发现。
    BACKGROUND: Culicoides midges have been well-studied in Spain, particularly over the last 20 years, mainly because of their role as vectors of arboviral diseases that affect livestock. Most studies on Culicoides are conducted using suction light traps in farmed environments, but studies employing alternative trapping techniques or focusing on natural habitats are scarce.
    METHODS: In the present study, we analyze Culicoides captured in 2023 at 476 sites in western Andalusia (southern Spain) using carbon dioxide-baited Biogents (BG)-sentinel traps across different ecosystems.
    RESULTS: We collected 3,084 Culicoides midges (3060 females and 24 males) belonging to 23 species, including the new species Culicoides grandifovea sp. nov. and the first record of Culicoides pseudolangeroni for Europe. Both species were described with morphological and molecular methods and detailed data on spatial distribution was also recorded. The new species showed close phylogenetic relations with sequences from an unidentified Culicoides from Morocco (92.6% similarity) and with Culicoides kurensis. Culicoides imicola was the most abundant species (17.4%), followed by Culicoides grandifovea sp. nov. (14.6%) and Culicoides kurensis (11.9%). Interestingly, Culicoides montanus was the only species of the obsoletus and pulicaris species complexes captured, representing the first record of this species in southern Spain. A total of 53 valid Culicoides species have been reported in the area, with 48 already reported in literature records and 5 more added in the present study. Information on the flight period for the most common Culicoides species is also provided.
    CONCLUSIONS: To the best of our knowledge, our study represents the most comprehensive effort ever done on nonfarmland habitats using carbon-dioxide baited suction traps for collecting Culicoides. Our data suggests that using carbon dioxide traps offers a completely different perspective on Culicoides communities compared with routinely used light traps, including the discovery of previously unrecorded species.
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  • 文章类型: Journal Article
    昆虫草食动物的唾液蛋白可以抑制植物防御,但是许多人的角色仍然难以捉摸。一种这样的蛋白质是来自背背河(RdGAPDH)叶料斗唾液的甘油醛-3-磷酸脱氢酶(GAPDH),已知传播水稻胆缩病毒(RGDV)。在这里,我们显示RdGAPDH被加载到外泌体中,并通过外泌体途径从唾液腺释放到水稻韧皮部中。在受感染的背r唾液腺中,该病毒上调外泌体RdGAPDH的积累和随后释放到韧皮部中。一旦被释放,RdGAPDH由于其-SH基团与H2O2反应而在水稻植物中消耗H2O2。水稻植株H2O2的这种减少促进了背藻的摄食,从而促进了RGDV的传播。然而,RdGAPDH的过度氧化可能对水稻植物造成潜在的不可逆的细胞毒性。作为回应,水稻利用谷胱甘肽对RdGAPDH的氧化产物进行S-谷胱甘肽化,发起了紧急防御。这个过程抵消了RdGAPDH过度氧化的潜在细胞损伤,帮助植物保持正常的表型。此外,来自其他半翅目载体的唾液GAPDHs同样抑制植物中的H2O2爆发。我们提出了一种策略,通过该策略,植物病毒利用昆虫唾液蛋白来调节植物防御,从而实现可持续的昆虫摄食和促进病毒传播。
    Salivary proteins of insect herbivores can suppress plant defenses, but the roles of many remain elusive. One such protein is glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from the saliva of the Recilia dorsalis (RdGAPDH) leafhopper, which is known to transmit rice gall dwarf virus (RGDV). Here we show that RdGAPDH was loaded into exosomes and released from salivary glands into the rice phloem through an exosomal pathway as R. dorsalis fed. In infected salivary glands of R. dorsalis, the virus upregulated the accumulation and subsequent release of exosomal RdGAPDH into the phloem. Once released, RdGAPDH consumed H2O2 in rice plants owing to its -SH groups reacting with H2O2. This reduction in H2O2 of rice plant facilitated R. dorsalis feeding and consequently promoted RGDV transmission. However, overoxidation of RdGAPDH could cause potential irreversible cytotoxicity to rice plants. In response, rice launched emergency defense by utilizing glutathione to S-glutathionylate the oxidization products of RdGAPDH. This process counteracts the potential cellular damage from RdGAPDH overoxidation, helping plant to maintain a normal phenotype. Additionally, salivary GAPDHs from other hemipterans vectors similarly suppressed H2O2 burst in plants. We propose a strategy by which plant viruses exploit insect salivary proteins to modulate plant defenses, thus enabling sustainable insect feeding and facilitating viral transmission.
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  • 文章类型: Journal Article
    背景:基于室内残留喷雾(IRS)的媒介控制是印度内脏利什曼病(VL)消除计划的主要组成部分之一。二氯二苯基三氯乙烷(DDT)一直用于IRS直到2015年,后来被合成的拟除虫菊酯α-氯氰菊酯所取代。这两类杀虫剂共享相同的目标地点,电压门控钠通道(Vgsc)。由于当地沙蝇载体中已记录了对滴滴涕的高抗性,无血流瘤,Vgsc基因的突变可能会对氯氰菊酯产生抗性,影响当前基于IRS拟除虫菊酯的矢量控制。
    方法:本研究旨在比较比哈尔邦两个喷洒村庄和两个未喷洒村庄的Vgsc敲低抗性(kdr)突变的频率,印度,在四个流行州中,VL负担最高。在四个村庄,作为2019年分子异种监测研究的一部分,收集了350名女性星虫。提取DNA并用于Vgsc基因的IIS6片段的序列分析以评估kdr突变的存在。
    结果:在不同位置鉴定了突变,最常见的是密码子1014,这是已知与蚊子和沙蝇的杀虫剂抗性有关的常见部位。观察到明显的村庄间差异,来自达兰普尔的沙蝇,一个未喷洒的村庄,与其他三个村庄(8.5-14.3%)相比,野生型等位基因的比例(55.8%)明显更高。在四个村庄中观察到的等位基因差异可能是由于先前暴露于DDT引起的选择压力所致。
    结论:虽然在比哈尔邦报告了滴滴涕耐药性,拟除虫菊酯仍然容易受到拟除虫菊酯的影响。然而,沙蝇中kdr突变的存在可能对印度特有村庄用于VL控制的IRS构成威胁。持续监测病媒生物学和杀虫剂抗性,使用生物测定和目标基因分型,需要告知印度的病媒控制策略,并确保达到和维持VL消除目标。
    BACKGROUND: Vector control based on indoor residual spraying (IRS) is one of the main components of the visceral leishmaniasis (VL) elimination programme in India. Dichlorodiphenyltrichloroethane (DDT) was used for IRS until 2015 and was later replaced by the synthetic pyrethroid alpha-cypermethrin. Both classes of insecticides share the same target site, the voltage-gated sodium channel (Vgsc). As high levels of resistance to DDT have been documented in the local sand fly vector, Phlebotomus argentipes, it is possible that mutations in the Vgsc gene could provide resistance to alpha-cypermethrin, affecting current IRS pyrethroid-based vector control.
    METHODS: This study aimed to compare frequencies of knockdown resistance (kdr) mutations in Vgsc between two sprayed and two unsprayed villages in Bihar state, India, which had the highest VL burden of the four endemic states. Across four villages, 350 female P. argentipes were collected as part of a 2019 molecular xenomonitoring study. DNA was extracted and used for sequence analysis of the IIS6 fragment of the Vgsc gene to assess the presence of kdr mutations.
    RESULTS: Mutations were identified at various positions, most frequently at codon 1014, a common site known to be associated with insecticide resistance in mosquitoes and sand flies. Significant inter-village variation was observed, with sand flies from Dharampur, an unsprayed village, showing a significantly higher proportion of wild-type alleles (55.8%) compared with the three other villages (8.5-14.3%). The allele differences observed across the four villages may result from selection pressure caused by previous exposure to DDT.
    CONCLUSIONS: While DDT resistance has been reported in Bihar, P. argentipes is still susceptible to pyrethroids. However, the presence of kdr mutations in sand flies could present a threat to IRS used for VL control in endemic villages in India. Continuous surveillance of vector bionomics and insecticide resistance, using bioassays and target genotyping, is required to inform India\'s vector control strategies and to ensure the VL elimination target is reached and sustained.
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  • 文章类型: Journal Article
    虫媒病毒可以通过雄性昆虫父系传播给后代,以便长期持续存在,但机制在很大程度上仍然未知。这里,我们使用破坏性水稻呼肠孤病毒及其叶斗载体的模型系统发现,在精子表面表达的昆虫核糖体-拯救者Pelo-Hbs1复合物介导了父体虫媒病毒的传播。这是通过将由病毒非结构蛋白Pns11构成的含病毒小管通过Pns11-Pelo相互作用靶向精子表面而发生的。小管组装依赖于Hsp70活性,而Pelo-Hbs1复合物通过抑制Hsp70活性抑制小管组装。然而,病毒激活的泛素连接酶E3介导Pelo泛素化降解,协同引起Hbs1降解。重要的是,Pns11有效地与Pelo竞争结合E3,从而拮抗E3介导的Pelo-Hbs1降解。这些过程导致感染睾丸中Pelo-Hbs1复合物的轻微减少,促进有效的小管组装。我们的发现提供了有关昆虫精子特异性Pelo-Hbs1复合物如何被调节以促进父系病毒传播而不破坏精子功能的见解。
    Arboviruses can be paternally transmitted by male insects to offspring for long-term persistence, but the mechanism remains largely unknown. Here, we use a model system of a destructive rice reovirus and its leafhopper vector to find that insect ribosome-rescuer Pelo-Hbs1 complex expressed on the sperm surface mediates paternal arbovirus transmission. This occurs through targeting virus-containing tubules constituted by viral nonstructural protein Pns11 to sperm surface via Pns11-Pelo interaction. Tubule assembly is dependent on Hsp70 activity, while Pelo-Hbs1 complex inhibits tubule assembly via suppressing Hsp70 activity. However, virus-activated ubiquitin ligase E3 mediates Pelo ubiquitinated degradation, synergistically causing Hbs1 degradation. Importantly, Pns11 effectively competes with Pelo for binding to E3, thus antagonizing E3-mediated Pelo-Hbs1 degradation. These processes cause a slight reduction of Pelo-Hbs1 complex in infected testes, promoting effective tubule assembly. Our findings provide insight into how insect sperm-specific Pelo-Hbs1 complex is modulated to promote paternal virus transmission without disrupting sperm function.
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  • 文章类型: Systematic Review
    Global changes in climate are contributing to modified Phlebotomine sand fly presence and activity, and the distribution of the pathogens they transmit (e.g., Leishmania and Phlebovirus), and are leading to their possible extension toward northern France. To predict the evolution of these pathogens and control their spread, it is essential to identify and characterize the presence and abundance of potential vectors. However, there are no recent publications describing sand fly species distribution in France. Consequently, we carried out a systematic review to provide distribution and abundance maps over time, along with a simplified dichotomous key for species in France. The review adhered to PRISMA guidelines, resulting in 172 relevant capture reports from 168 studies out of the 2646 documents retrieved, of which 552 were read and 228 analyzed. Seven species were recorded and categorized into three groups based on their abundance: low abundance species, abundant but little-studied species, and abundant vector species. Sand flies are certainly present throughout France but there is a greater diversity of species in the Mediterranean region. Phlebotomus perniciosus and Ph. ariasi are the most abundant and widely distributed species, playing a role as vectors of Leishmania. Sergentomyia minuta, though very abundant, remains under-studied, highlighting the need for further research. Phlebotomus papatasi, Ph. perfiliewi, Ph. sergenti, and Ph. mascittii are present in low numbers and are less documented, limiting understanding of their potential role as vectors. This work provides the necessary basis for comparison of field data generated in the future.
    UNASSIGNED: Répartition et abondance des phlébotomes en France : revue systématique.
    UNASSIGNED: Les changements globaux du climat contribuent à modifier la présence et l’activité des phlébotomes, ainsi que la répartition des pathogènes qu’ils transmettent (par exemple Leishmania et Phlebovirus), et conduisent à leur éventuelle extension vers le nord de la France. Pour prédire l’évolution de ces pathogènes et contrôler leur propagation, il est essentiel d’identifier et de caractériser la présence et l’abondance des vecteurs potentiels. Il n’existe cependant aucune publication récente décrivant la répartition des espèces de phlébotomes en France. Par conséquent, nous avons réalisé une revue systématique pour fournir des cartes de répartition et d’abondance dans le temps, ainsi qu’une clé dichotomique simplifiée pour les espèces françaises. La revue a respecté les lignes directrices PRISMA, aboutissant à 172 rapports de capture pertinents provenant de 168 études sur les 2 646 documents récupérés, dont 552 ont été lus et 228 analysés. Sept espèces ont été recensées et classées en trois groupes en fonction de leur abondance : les espèces de faible abondance, les espèces abondantes mais peu étudiées et les espèces vectrices abondantes. Les phlébotomes sont certes présents partout en France mais on trouve une plus grande diversité d’espèces dans le bassin méditerranéen. Phlebotomus perniciosus et Ph. ariasi sont les espèces les plus abondantes et les plus largement réparties, jouant un rôle de vecteurs de Leishmania. Sergentomyia minuta, bien que très abondant, reste sous-étudié, ce qui souligne la nécessité de recherches plus approfondies. Phlebotomus papatasi, Ph. perfiliewi, Ph. sergenti et Ph. mascittii sont présents en faibles nombres et sont moins documentés, ce qui limite la compréhension de leur rôle potentiel en tant que vecteurs. Ce travail fournit la base nécessaire pour la comparaison des données de terrain générées à l’avenir.
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  • 文章类型: English Abstract
    裂谷热(RVF)是一种虫媒病毒病,在撒哈拉以南非洲和阿拉伯半岛引起定期的流行病和流行病。2016年,尼日尔在塔胡瓦地区首次爆发裂谷热,这对动物和人类健康造成了严重的后果。这项研究的目的是研究该疾病的潜在载体之间的RVFV循环。
    这是2021年8月在Tahoua和Agadez地区进行的横断面调查。通过在人类住宅中使用早晨喷雾和CDC光陷阱方法收集成年蚊子。经过形态学鉴定,提取病毒RNA。通过使用QIAamp病毒RNA迷你试剂盒(Qiagen)提取RNA。通过使用qRT-PCR方法进行RVFV检测。
    共有2487只昆虫(1978年蚊子,识别出509只沙蝇和251只叮咬mid),并分为三个科(Culicidae,精神科和Ceratopogonidae)。由库蚊属组成的Culicidae家族最丰富,主要是Cx。pipiens(31.88%;n=793),其次是Mansoniasp(21.51%;n=535),按蚊(8.44%;n=210),A.法老(0.72%;n=18),A.rufipes(0.48%;n=12),Cx.quinquefasciatus(6.39%;n=159),有沙蝇的精神病科(20.46%;n=509),和Culicoides属(10.09%;n=251)。对蚊子样品(N=96)进行的qRT-PCR突出显示了Cx的一个个体。Pipiens对RVFV呈阳性。该标本来自Tassara地区(Tahoua),并通过CDCLightTrap方法收集。
    这项研究首次揭示了RVFV在Cx之间的循环。尼日尔的Pipiens,并强调了该媒介在疾病传播中可能的媒介作用。应进行进一步调查,以确定支持该地区病毒维持的生物和生态决定因素,以指导控制干预措施。
    The Rift Valley Fever (RVF) is an arbovirus disease responsible of regular epizootics and epidemics in sub-Saharan Africa and Arabian Peninsula. In 2016, Niger experienced its first outbreak of RVF in Tahoua region, which resulted in high consequences in animal and human health. The aim of this study was to investigate on the RVFV circulation among potential vectors of the disease.
    This was a cross-sectional survey carried out in Tahoua and Agadez regions in August 2021. Adult mosquitoes were collected by using the morning spray in human dwellings and the CDC light trap methods. After morphological identification, viral RNA was extracted. The RNA was extracted by using QIAamp Viral RNA Mini Kit (Qiagen). The RVFV detection was performed by using the qRT-PCR method.
    A total of 2487 insects (1978 mosquitoes, 509 sandflies and 251 biting midges) were identified and divided into three families (Culicidae, Psychodidae and Ceratopogonidae). The Culicidae family composed of the Culex genus being the most abundant with a predominance of Cx.pipiens (31.88%; n = 793) followed by Mansonia sp (21.51%; n = 535), Anophelesgambiae s.l. (8.44%; n = 210), An. pharoensis (0.72%; n = 18), An. rufipes (0.48%; n = 12), Cx. quinquefasciatus (6.39%; n = 159), the Psychodidae with sandflies (20.46%; n = 509), and the Ceratopogonidae with Culicoides genus (10.09%; n = 251). The qRT-PCR carried out on a sample of mosquitoes (N = 96) highlighted that one individual of Cx.pipiens was found positive to RVFV. This specimen was from Tassara locality (Tahoua) and collected by CDC Light Trap method.
    This study reveals for the first time the circulation of RVFV among Cx.pipiens in Niger and highlights the possible vectorial role of this vector in the disease transmission. Further investigations should be carried out to identify the biological and ecological determinants that support the maintenance of the virus in this area in order to guide control interventions.
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  • 文章类型: Journal Article
    水稻黑条矮缩病毒(RBSDV)是一种破坏性疾病的病原体,感染了亚洲禾本科一些经济上重要的作物。虽然RBSDV会导致高产量损失,复制病毒种群的遗传特征尚未在不同的宿主植物和昆虫载体中进行研究。在这里,来自中国RBSDV感染水稻的11个公开可用的RNA-Seq数据集,玉米,和有毒飞虱(Laodelphoxstriatellus)从NCBI数据库中获得。通过CLCWorkbench20和GeneiousPrime软件分析预期RBSDV群体的SNP和RNA表达谱的模式。这些分析发现RBSDV整个转录组中有2,646个密码子改变的突变,以及在S5-1,S5-2,S6,S7-1,S7-2,S9和S10开放阅读框(ORF)的关键区域内具有高变异频率的47个共突变热点。此外,三个联合突变位于P9-1的三维蛋白上。受感染的RBSDV易感水稻品种KTWYJ3和本地飞虱数据集显示出更多的共同突变热点数量。我们的分析表明,病毒基因组片段的表达模式因宿主类型而异。与飞虱不同,S5-1、S2、S6和S9-1ORF,在寄主植物中分别具有最大的读数;S5-2,S9-2和S7-2的表达水平最低。这些发现强调病毒/宿主复合物在植物病毒的遗传变异和基因表达谱中是有效的。我们的分析显示没有重组事件的证据。有趣的是,在12个RBSDVORF观察到阴性选择,除了P1蛋白的1015位,检测到阳性选择。该研究强调了SRA数据集用于分析病毒周期的潜力,并增强了我们对RBSDV遗传多样性和宿主特异性的理解。
    Rice black-streaked dwarf virus (RBSDV) is an etiological agent of a destructive disease infecting some economically important crops from the Gramineae family in Asia. While RBSDV causes high yield losses, genetic characteristics of replicative viral populations have not been investigated within different host plants and insect vectors. Herein, eleven publicly available RNA-Seq datasets from Chinese RBSDV-infected rice, maize, and viruliferous planthopper (Laodelphax striatellus) were obtained from the NCBI database. The patterns of SNP and RNA expression profiles of expected RBSDV populations were analyzed by CLC Workbench 20 and Geneious Prime software. These analyses discovered 2,646 mutations with codon changes in RBSDV whole transcriptome and forty-seven co-mutated hotspots with high variant frequency within the crucial regions of S5-1, S5-2, S6, S7-1, S7-2, S9, and S10 open reading frames (ORFs) which are responsible for some virulence and host range functions. Moreover, three joint mutations are located on the three-dimensional protein of P9-1. The infected RBSDV-susceptible rice cultivar KTWYJ3 and indigenous planthopper datasets showed more co-mutated hotspot numbers than others. Our analyses showed the expression patterns of viral genomic fragments varied depending on the host type. Unlike planthopper, S5-1, S2, S6, and S9-1 ORFs, respectively had the greatest read numbers in host plants; and S5-2, S9-2, and S7-2 were expressed in the lowest level. These findings underscore virus/host complexes are effective in the genetic variations and gene expression profiles of plant viruses. Our analysis revealed no evidence of recombination events. Interestingly, the negative selection was observed at 12 RBSDV ORFs, except for position 1015 in the P1 protein, where a positive selection was detected. The research highlights the potential of SRA datasets for analysis of the virus cycle and enhances our understanding of RBSDV\'s genetic diversity and host specificity.
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