allosteric modulation

变构调制
  • 文章类型: Journal Article
    SCH23390是一种广泛使用的D1多巴胺受体(D1R)拮抗剂,也引起一些不依赖D1R的作用。我们之前发现苯并氮杂卓,SKF83959,SCH23390的类似物,产生Sigma-1受体(Sig1R)的正变构调节。SCH23390不结合Sig1R的邻位氧位点,但增强3H(+)-喷他佐辛与Sig1R的结合。在这项研究中,我们研究了SCH23390是否充当Sig1R的变构调节剂。我们在转染的HEK293T和SH-SY5Y细胞中检测到响应SCH23390的结合免疫球蛋白蛋白(BiP)和Sig1R易位到质膜的Sig1R解离增加,分别。通过以时间和剂量依赖性方式抑制GSK3β活性进一步证实了SCH23390对Sig1R的激活;这种作用被Sig1R拮抗剂预处理阻断,BD1047,并通过敲低Sig1R。SCH23390还在野生型小鼠中抑制GSK3β,但在Sig1R敲除小鼠中不抑制。最后,我们显示SCH23390变构调节Sig1R激动剂SKF10047对GSK3β的抑制作用。SCH23390的这种正变构效应通过促进SKF10047在用MPP+攻击的原代皮质神经元中提供的神经元保护而得到进一步证实。这些结果提供了SCH23390引发Sig1R的功能性变构调节的第一个证据。我们的发现不仅揭示了SCH23390的新药理作用,而且还表明了SCH23390介导的D1R非依赖性作用的潜在机制。因此,在解释对SCH23390的药理反应时,应注意这些Sig1R介导的作用。
    SCH23390 is a widely used D1 dopamine receptor (D1R) antagonist that also elicits some D1R-independent effects. We previously found that the benzazepine, SKF83959, an analog of SCH23390, produces positive allosteric modulation of the Sigma-1 receptor (Sig1R). SCH23390 does not bind to the orthodoxic site of Sig1R but enhances the binding of 3H (+)-pentazocine to Sig1R. In this study, we investigated whether SCH23390 functions as an allosteric modulator of Sig1R. We detected increased Sig1R dissociation from binding immunoglobulin protein (BiP) and translocation of Sig1R to the plasma membrane in response to SCH23390 in transfected HEK293T and SH-SY5Y cells, respectively. Activation of Sig1R by SCH23390 was further confirmed by inhibition of GSK3β activity in a time- and dose-dependent manner; this effect was blocked by pretreatment with the Sig1R antagonist, BD1047, and by knockdown of Sig1R. SCH23390 also inhibited GSK3β in wild-type mice but not in Sig1R knockout mice. Finally, we showed that SCH23390 allosterically modulated the effect of the Sig1R agonist SKF10047 on inhibition of GSK3β. This positive allosteric effect of SCH23390 was further confirmed via promotion of neuronal protection afforded by SKF10047 in primary cortical neurons challenged with MPP+. These results provide the first evidence that SCH23390 elicits functional allosteric modulation of Sig1R. Our findings not only reveal novel pharmacological effects of SCH23390 but also indicate a potential mechanism for SCH23390-mediated D1R-independent effects. Therefore, attention should be paid to these Sig1R-mediated effects when explaining pharmacological responses to SCH23390.
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  • 文章类型: Journal Article
    大麻素CB1受体(CB1)的正变构调节剂(PAM)通过避免与正构CB1激活相关的不良反应,在治疗神经性疼痛和成瘾方面提供了潜在的治疗优势。这里,使用分子建模和诱变来鉴定对CB1处的PAM活性至关重要的残基。在计算机模拟中鉴定了六个推定的变构结合位点,包括以前与胆固醇结合相关的新位点,并且每个位点内的关键残基突变为丙氨酸。最近确定的ZCZ011结合位点被发现是必不可少的变构激动,由于GAT228,GAT229和ZCZ011在不存在正位配体的情况下都增加了野生型G蛋白的解离;突变体F191A3.27和I169A2.56中的活性被消除。在存在正构配体CP55940的情况下,ZCZ011证明了PAM活性,该活性仅在I169A2.56中被消除。相比之下,对于突变体R220A3.56、L404A8.50、F191A3.27和I169A2.56,GAT229的PAM活性降低。这表明变构调制可能代表多个位点结合的净效应,这种变构激动作用很可能是通过ZCZ011位点介导的。这项研究强调了在寻找纯CB1变构调节剂时需要详细了解配体受体相互作用。
    Positive allosteric modulators (PAMs) of the cannabinoid CB1 receptor (CB1) offer potential therapeutic advantages in the treatment of neuropathic pain and addiction by avoiding the adverse effects associated with orthosteric CB1 activation. Here, molecular modeling and mutagenesis were used to identify residues central to PAM activity at CB1. Six putative allosteric binding sites were identified in silico, including novel sites previously associated with cholesterol binding, and key residues within each site were mutated to alanine. The recently determined ZCZ011 binding site was found to be essential for allosteric agonism, as GAT228, GAT229 and ZCZ011 all increased wild-type G protein dissociation in the absence of an orthosteric ligand; activity that was abolished in mutants F191A3.27 and I169A2.56. PAM activity was demonstrated for ZCZ011 in the presence of the orthosteric ligand CP55940, which was only abolished in I169A2.56. In contrast, the PAM activity of GAT229 was reduced for mutants R220A3.56, L404A8.50, F191A3.27 and I169A2.56. This indicates that allosteric modulation may represent the net effect of binding at multiple sites, and that allosteric agonism is likely to be mediated via the ZCZ011 site. This study underlines the need for detailed understanding of ligand receptor interactions in the search for pure CB1 allosteric modulators.
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  • 文章类型: Journal Article
    人血清白蛋白(HSA)是一种具有多种配体结合能力的多结构域大分子,尽管它是单体蛋白,但由于其允许变构调节的能力。生理学上,HSA作为各种外源性和内源性化合物和脂肪酸的主要载体,并改变几种药物的药代动力学特性。它具有抗氧化性质,并在治疗上用于改善用于治疗几种疾病的药理学试剂的药物递送。白蛋白在容纳各种类型的药物方面的灵活性以及多种修饰使得该蛋白质成为在治疗中具有无法估量的潜力的通用药物载体。这篇综述简要概述了HSA的不同结构特性,及其各种结合位点,此外,基因的概述,生物医学,还包括药物的变构调节和HSA的药物递送方面,这可能有助于指导先进的临床应用和进一步研究这种非凡的蛋白质的治疗潜力。
    Human serum albumin (HSA) is a multi-domain macromolecule with diverse ligand binding capability because of its ability to allow allosteric modulation despite being a monomeric protein. Physiologically, HSA act as the primary carrier for various exogenous and endogenous compounds and fatty acids, and alter the pharmacokinetic properties of several drugs. It has antioxidant properties and is utilized therapeutically to improve the drug delivery of pharmacological agents for the treatment of several disorders. The flexibility of albumin in holding various types of drugs coupled with a variety of modifications makes this protein a versatile drug carrier with incalculable potential in therapeutics. This review provides a brief outline of the different structural properties of HSA, and its various binding sites, moreover, an overview of the genetic, biomedical, and allosteric modulation of drugs and drug delivery aspects of HSA is also included, which may be helpful in guiding advanced clinical applications and further research on the therapeutic potential of this extraordinary protein.
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  • 文章类型: Journal Article
    目的:鸟苷酸环化酶-A(GC-A),内源性心房利钠肽(ANP)和B型利钠肽(BNP)激活,在心血管和肾脏稳态的调节中起着重要作用,是一个有吸引力的药物靶标。即使小分子调节剂允许口服给药和更长的半衰期,迄今为止,GC-A的药物靶向限于肽。因此,在这项研究中,我们旨在开发GC-A的小分子活化剂。
    方法:通过高通量筛选鉴定并通过计算机模拟设计进行优化。在表达GC-A的QBIHEK293细胞中进行环GMP测量,使用AlphaScreen技术的GC-B或两种受体的嵌合体。使用125I-ANP在膜制备物或全细胞中进行结合测定。在从Wistar大鼠分离的主动脉环中测量血管舒张。
    结果:我们已经确定了GC-A的小分子变构增强剂,增强ANP或BNP在细胞系统中的作用以及ANP诱导的大鼠主动脉环血管舒张。作用机制似乎是新颖的,不是通过先前描述的变构结合位点介导的。此外,选择性和活性取决于两个相似受体GC-A和GC-B之间不同的单个氨基酸残基。
    结论:我们描述了GC-A上的一种新型变构结合位点,可以通过增强ANP和BNP作用的小分子靶向。这些化合物将是进一步开发和验证GC-A增强在心血管治疗中的潜在用途的有价值的工具。
    Guanylyl cyclase-A (GC-A), activated by endogenous atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP), plays an important role in the regulation of cardiovascular and renal homeostasis and is an attractive drug target. Even though small molecule modulators allow oral administration and longer half-life, drug targeting of GC-A has so far been limited to peptides. Thus, in this study we aimed to develop small molecular activators of GC-A.
    Hits were identified through high-throughput screening and optimized by in silico design. Cyclic GMP was measured in QBIHEK293A cells expressing GC-A, GC-B or chimerae of the two receptors using AlphaScreen technology. Binding assays were performed in membrane preparations or whole cells using 125 I-ANP. Vasorelaxation was measured in aortic rings isolated from Wistar rats.
    We have identified small molecular allosteric enhancers of GC-A, which enhanced ANP or BNP effects in cellular systems and ANP-induced vasorelaxation in rat aortic rings. The mechanism of action appears novel and not mediated through previously described allosteric binding sites. In addition, the selectivity and activity depend on a single amino acid residue that differs between the two similar receptors GC-A and GC-B.
    We describe a novel allosteric binding site on GC-A, which can be targeted by small molecules to enhance ANP and BNP effects. These compounds will be valuable tools in further development and proof-of-concept of GC-A enhancement for the potential use in cardiovascular therapy.
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  • 文章类型: Journal Article
    受体蛋白酪氨酸激酶(RTK)的细胞信号传导受到受体蛋白酪氨酸磷酸酶(RPTP)的抵消作用的严格控制。由于它们在衰减RTK的信号启动效能中的作用,RPTP长期以来一直被视为治疗靶标。然而,RPTP激活剂的开发仍然有限。我们先前报道了RPTP家族的代表性成员(蛋白酪氨酸磷酸酶受体J或PTPRJ)的同二聚体化受特异性跨膜(TM)残基的调节。通过单点突变破坏这种相互作用会促进PTPRJ访问其RTK底物(例如,EGFR和FLT3),减少RTK的磷酸化和下游信号,并最终拮抗RTK驱动的细胞表型。这里,我们设计并测试了一系列一流的PTPRJ的pH响应性TM肽激动剂,这些激动剂可溶于水溶液,但当pH降低至与肿瘤酸性微环境相匹配时,作为螺旋TM结构域插入脂质膜中.最有前途的肽减少EGFR的磷酸化和抑制癌细胞EGFR驱动的迁移和增殖,类似于PTPRJ的TM点突变。开发关键RPTP的肿瘤选择性和TM靶向肽结合物可以提供一种潜在的转化方法来研究RPTP的选择性机制,而不需要特异性较少的抑制剂,并且代表了针对RTK驱动的癌症的新型疗法。本文受版权保护。保留所有权利。
    Cell signaling by receptor protein tyrosine kinases (RTKs) is tightly controlled by the counterbalancing actions of receptor protein tyrosine phosphatases (RPTPs). Due to their role in attenuating the signal-initiating potency of RTKs, RPTPs have long been viewed as therapeutic targets. However, the development of activators of RPTPs has remained limited. We previously reported that the homodimerization of a representative member of the RPTP family (protein tyrosine phosphatase receptor J or PTPRJ) is regulated by specific transmembrane (TM) residues. Disrupting this interaction by single point mutations promotes PTPRJ access to its RTK substrates (e.g., EGFR and FLT3), reduces RTK\'s phosphorylation and downstream signaling, and ultimately antagonizes RTK-driven cell phenotypes. Here, we designed and tested a series of first-in-class pH-responsive TM peptide agonists of PTPRJ that are soluble in aqueous solution but insert as a helical TM domain in lipid membranes when the pH is lowered to match that of the acidic microenvironment of tumors. The most promising peptide reduced EGFR\'s phosphorylation and inhibited cancer cell EGFR-driven migration and proliferation, similar to the PTPRJ\'s TM point mutations. Developing tumor-selective and TM-targeting peptide binders of critical RPTPs could afford a potentially transformative approach to studying RPTP\'s selectivity mechanism without requiring less specific inhibitors and represent a novel class of therapeutics against RTK-driven cancers.
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  • 文章类型: Journal Article
    G蛋白偶联受体(GPCRs)代表了大约三分之一的FDA批准的小分子药物的靶标。腺苷A1受体(A1R),四种腺苷GPCR亚型之一,在人类中具有重要的(病理)生理作用。A1R在心血管和神经系统的调节中具有公认的作用,它已被确定为许多疾病的潜在治疗靶标,包括心脏缺血再灌注损伤,认知,癫痫,和神经性疼痛。A1R小分子药物,通常是正构配体,经过临床试验。迄今为止,没有人进入诊所,主要是由于剂量限制的不必要的影响。靶向拓扑上不同的结合位点的A1R变构调节剂的开发代表了克服当前限制的有希望的方法。变构配体的药理学参数,包括亲和力,功效和协同性,可以优化以调节高亚型的A1R活性,空间和时间的选择性。这篇综述旨在提供对A1R作为潜在治疗靶标的见解,并强调对A1R变构调制的结构理解的最新进展。
    G protein-coupled receptors (GPCRs) represent the target for approximately a third of FDA-approved small molecule drugs. The adenosine A1 receptor (A1R), one of four adenosine GPCR subtypes, has important (patho)physiological roles in humans. A1R has well-established roles in the regulation of the cardiovascular and nervous systems, where it has been identified as a potential therapeutic target for a number of conditions, including cardiac ischemia-reperfusion injury, cognition, epilepsy, and neuropathic pain. A1R small molecule drugs, typically orthosteric ligands, have undergone clinical trials. To date, none have progressed into the clinic, predominantly due to dose-limiting unwanted effects. The development of A1R allosteric modulators that target a topographically distinct binding site represent a promising approach to overcome current limitations. Pharmacological parameters of allosteric ligands, including affinity, efficacy and cooperativity, can be optimized to regulate A1R activity with high subtype, spatial and temporal selectivity. This review aims to offer insights into the A1R as a potential therapeutic target and highlight recent advances in the structural understanding of A1R allosteric modulation.
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  • 文章类型: Journal Article
    尽管靶向大麻素受体(CBRs)的正构结合位点的药物对人体生理和病理状况具有多种治疗作用,它们也会造成严重的不良影响。只有少数正构配体已成功通过临床试验。最近,变构调制已成为药物发现的新选择,副作用更少,并且有可能避免药物过量。在这次审查中,我们重点介绍了与针对CBR的变构调节剂(AMs)的药物发现相关的新发现。我们总结了新合成的AM和报道/预测的变构结合位点。我们还讨论了AMs结合的结构决定因素以及CBR变构的分子机理。
    Although drugs targeting the orthosteric binding site of cannabinoid receptors (CBRs) have several therapeutic effects on human physiological and pathological conditions, they can also cause serious adverse effects. Only a few orthosteric ligands have successfully passed clinical trials. Recently, allosteric modulation has become a novel option for drug discovery, with fewer adverse effects and the potential to avoid drug overdose. In this review, we highlight novel findings related to the drug discovery of allosteric modulators (AMs) targeting CBRs. We summarize newly synthesized AMs and the reported/predicted allosteric binding sites. We also discuss the structural determinants of the AMs binding as well as the molecular mechanism of CBR allostery.
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  • 文章类型: Journal Article
    SARS-CoV-2刺突蛋白含有功能上重要的脂肪酸(FA)结合位点,在其他一些冠状病毒中也发现了这种病毒,例如SARS-CoV和MERS-CoV。亚油酸(LA)对FA位点的占据通过将尖峰锁定在感染性较低的构象中来降低感染性。这里,我们使用动态-非平衡分子动力学(D-NEMD)模拟来比较尖峰变体对LA去除的变构响应。D-NEMD模拟表明,FA位点与蛋白质的其他功能区域偶联,例如受体结合基序(RBM),N端域(NTD),弗林蛋白酶切割位点,和融合肽周围的区域。D-NEMD模拟还鉴定了将FA位点连接到这些功能区域的变构网络。野生型穗与四种变体(Alpha,Delta,Deltaplus,和OmicronBA.1)表明,这些变体对LA去除的反应显着不同。Alpha上与FA位点的变构连接通常与野生型蛋白上的相似,除了RBM和S71-R78地区,显示与FA网站的链接较弱。相比之下,Omicron是最不同的变体,在RBM上表现出显著差异,NTD,V622-L629和弗林蛋白酶切割位点。变构调制的这些差异可能具有功能相关性,可能影响传播性和毒力。LA对SARS-CoV-2变体影响的实验比较,包括新兴的变体,是有保证的。
    The SARS-CoV-2 spike protein contains a functionally important fatty acid (FA) binding site, which is also found in some other coronaviruses, e.g. SARS-CoV and MERS-CoV. The occupancy of the FA site by linoleic acid (LA) reduces infectivity by \'locking\' the spike in a less infectious conformation. Here, we use dynamical-nonequilibrium molecular dynamics (D-NEMD) simulations to compare the allosteric responses of spike variants to LA removal. D-NEMD simulations show that the FA site is coupled to other functional regions of the protein, e.g. the receptor-binding motif (RBM), N-terminal domain (NTD), furin cleavage site, and regions surrounding the fusion peptide. D-NEMD simulations also identify the allosteric networks connecting the FA site to these functional regions. The comparison between the wild-type spike and four variants (Alpha, Delta, Delta plus, and Omicron BA.1) shows that the variants differ significantly in their responses to LA removal. The allosteric connections to the FA site on Alpha are generally similar to those on the wild-type protein, with the exception of the RBM and the S71-R78 region, which show a weaker link to the FA site. In contrast, Omicron is the most different variant, exhibiting significant differences in the RBM, NTD, V622-L629, and furin cleavage site. These differences in the allosteric modulation may be of functional relevance, potentially affecting transmissibility and virulence. Experimental comparison of the effects of LA on SARS-CoV-2 variants, including emerging variants, is warranted.
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  • 文章类型: Journal Article
    最初,据认为,单一的血清淀粉样蛋白A(SAA)蛋白参与淀粉样蛋白A淀粉样变性,但事实上,SAA代表四元家族,其中SAA1和SAA2是急性期蛋白(A-SAA)。SAA在广泛的动物物种中的整个进化过程中高度保守,表明具有重要的生物学功能。事实上,A-SAA与许多不同的生物学活性有关,其中许多这些功能是通过G蛋白偶联受体(GPCR)介导的。甲酰肽受体(FPR)2.例如,通过激活FPR2,A-SAA已被描述为调节白细胞活化,动脉粥样硬化,病原体识别,骨形成和细胞存活。此外,A-SAA进行翻译后修饰,主要通过蛋白水解加工,产生一系列A-SAA衍生的肽。尽管对A-SAA衍生肽的生物学效应知之甚少,它们已被证明通过与其他GPCR配体的协同作用,通过FPR2激活促进中性粒细胞和单核细胞迁移,即趋化因子CXCL8和CCL3。在这次审查中,我们提供了对A-SAA的FPR2介导的功能的详细分析。此外,我们讨论了A-SAA衍生肽作为FPR2变构调节剂的潜在作用。
    Originally, it was thought that a single serum amyloid A (SAA) protein was involved in amyloid A amyloidosis, but in fact, SAA represents a four-membered family wherein SAA1 and SAA2 are acute phase proteins (A-SAA). SAA is highly conserved throughout evolution within a wide range of animal species suggestive of an important biological function. In fact, A-SAA has been linked to a number of divergent biological activities wherein a number of these functions are mediated via the G protein-coupled receptor (GPCR), formyl peptide receptor (FPR) 2. For instance, through the activation of FPR2, A-SAA has been described to regulate leukocyte activation, atherosclerosis, pathogen recognition, bone formation and cell survival. Moreover, A-SAA is subject to post-translational modification, primarily through proteolytic processing, generating a range of A-SAA-derived peptides. Although very little is known regarding the biological effect of A-SAA-derived peptides, they have been shown to promote neutrophil and monocyte migration through FPR2 activation via synergy with other GPCR ligands namely, the chemokines CXCL8 and CCL3, respectively. Within this review, we provide a detailed analysis of the FPR2-mediated functions of A-SAA. Moreover, we discuss the potential role of A-SAA-derived peptides as allosteric modulators of FPR2.
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  • 文章类型: Journal Article
    由N-甲基-D-天冬氨酸受体(NMDARs)的不同亚型介导的神经传递是基本脑功能和发育以及神经精神疾病和障碍的基础。NMDAR是甘氨酸和谷氨酸门控离子通道,以异四聚体的形式存在,由强制性GluN1和GluN2(A-D)和/或GluN3(A-B)组成。GluN2C和GluN2D亚基形成具有不同性质和时空表达模式的离子通道。这里,我们提供了在存在和不存在GluN2C选择性正变构增效剂(PAM)的情况下,激动剂结合的人GluN1-2CNMDAR的结构,PYD-106,激动剂结合的GluN1-2A-2C三异聚NMDAR,和激动剂结合的GluN1-2DNMDARs通过单粒子电子冷冻显微镜。我们的分析显示了GluN2CNMDAR的独特亚基间和结构域排列,它有助于PAM结合口袋的功能调节和形成,与GluN2DNMDAR不同。我们的发现为研究含GluN2C和GluN2D的NMDAR提供了基础蓝图,与神经精神疾病有独特的关系。
    Neurotransmission mediated by diverse subtypes of N-methyl-D-aspartate receptors (NMDARs) is fundamental for basic brain functions and development as well as neuropsychiatric diseases and disorders. NMDARs are glycine- and glutamate-gated ion channels that exist as heterotetramers composed of obligatory GluN1 and GluN2(A-D) and/or GluN3(A-B). The GluN2C and GluN2D subunits form ion channels with distinct properties and spatio-temporal expression patterns. Here, we provide the structures of the agonist-bound human GluN1-2C NMDAR in the presence and absence of the GluN2C-selective positive allosteric potentiator (PAM), PYD-106, the agonist-bound GluN1-2A-2C tri-heteromeric NMDAR, and agonist-bound GluN1-2D NMDARs by single-particle electron cryomicroscopy. Our analysis shows unique inter-subunit and domain arrangements of the GluN2C NMDARs, which contribute to functional regulation and formation of the PAM binding pocket and is distinct from GluN2D NMDARs. Our findings here provide the fundamental blueprint to study GluN2C- and GluN2D-containing NMDARs, which are uniquely involved in neuropsychiatric disorders.
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