Planktonic bacteria

浮游细菌
  • 文章类型: Journal Article
    蓝细菌可以与异养微生物形成复杂的相互作用,但是这种关系易受营养浓度的影响。解开与营养供应有关的蓝细菌-细菌相互作用对于了解它们在全球变化下的地球化学循环中的作用至关重要。我们假设,贫营养海洋中营养供应的增加可以促进蓝细菌和细菌之间的相互作用。因此,我们调查了浮游细菌及其与蓝细菌的相互作用,这些细菌与由于热带西太平洋浅海和深海山周围的上升流增加而引起的养分升高有关。我们发现,与深层海山相比,浅海山深层叶绿素最大值层中的蓝藻明显更高的网络复杂性。蓝细菌可以响应相对较高的养分浓度而形成细菌相互作用和群落均匀性。根据塔拉海洋数据,进一步估计了营养素对蓝藻相关网络的影响。统计分析进一步表明,硝酸盐浓度对全球贫营养海洋中蓝细菌-细菌相互作用的促进作用。通过分析塔拉海洋宏观基因组数据,我们在所有样本中检测到与蓝细菌-细菌相互作用相关的功能基因,表明了一种相互关系的存在。我们的结果揭示了蓝细菌与细菌的相互作用,以响应贫营养海洋中的营养升高,并从生物相互作用的角度强调了全球变化对细菌群落的潜在负面影响。
    Cyanobacteria can form complex interactions with heterotrophic microorganisms, but this relationship is susceptible to nutrient concentrations. Disentangling the cyanobacteria-bacteria interactions in relation to nutrient supply is essential to understanding their roles in geochemical cycles under global change. We hypothesize that enhanced nutrient supply in oligotrophic oceans can promote interactions among cyanobacteria and bacteria. Therefore, we investigated the planktonic bacteria and their interactions with cyanobacteria in relation to elevated nutrients caused by enhanced upwelling around a shallow and a deep seamount in the tropical western Pacific Ocean. We found obviously higher complexity of network occurred with significantly more cyanobacteria in the deep chlorophyll maximum layer of the shallow seamount when compared with that of the deep seamount. Cyanobacteria can shape bacterial interaction and community evenness in response to relatively high nutrient concentrations. The effects of the nutrients on cyanobacteria-related networks were further estimated based on the Tara Oceans data. Statistical analyses further showed a facilitative effect of nitrate concentrations on cyanobacteria-bacteria mutualistic interactions in the global oligotrophic ocean. By analysing the Tara Ocean macrogenomic data, we detected functional genes related to cyanobacteria-bacteria interactions in all samples, indicating the existence of a mutualistic relationship. Our results reveal cyanobacteria-bacteria interaction in response to nutrient elevation in oligotrophic ocean and highlight the potentially negative effects of global change on the bacterial community from the view of the bio-interaction.
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  • 文章类型: Journal Article
    耐甲氧西林金黄色葡萄球菌(MRSA)感染,特别是生物膜组织的细菌,仍然是临床挑战和严重的健康问题。利福布汀(RFB),利福霉素类的抗生素,在以前的工作中显示出优异的抗葡萄球菌活性。这里,我们建议将RFB加载到脂质体中,旨在促进RFB在感染部位的积累,从而增强治疗效力。两株临床分离的MRSA,MRSA-C1和MRSA-C2用于测试开发的制剂,以及阳性对照,万古霉素(VCM)。游离和脂质体形式的RFB显示出高抗菌活性,在测试的制剂之间具有相似的效力。在MRSA-C1中,游离RFB和脂质体RFB的最小抑制浓度(MIC)为0.009和0.013μg/mL,分别。能够抑制游离RFB和脂质体RFB对MRSA-C1的50%生物膜生长(MBIC50)的最小生物膜抑制浓度为0.012和0.008μg/mL,分别。共聚焦显微镜研究证明了未负载和RFB负载的脂质体在细菌生物膜基质中的快速内化。在系统性MRSA-C1感染的小鼠模型中,Balb/c小鼠用20和40mg/kg体重的RFB制剂和VCM处理,分别。体内结果表明,用RFB制剂治疗的小鼠主要器官的细菌负荷和生长指数显着降低。与对照组和VCM(阳性对照)组相比。此外,VCM治疗剂量比用于RFB制剂的剂量高两倍,加强拟议策略的治疗效力。此外,RFB制剂是唯一与100%存活相关的制剂。全球范围内,这项研究强调了RFB纳米制剂作为对抗MRSA感染的有效和安全方法的潜力.
    Methicillin-resistant Staphylococcus aureus (M RSA) infections, in particular biofilm-organized bacteria, remain a clinical challenge and a serious health problem. Rifabutin (RFB), an antibiotic of the rifamycins class, has shown in previous work excellent anti-staphylococcal activity. Here, we proposed to load RFB in liposomes aiming to promote the accumulation of RFB at infected sites and consequently enhance the therapeutic potency. Two clinical isolates of MRSA, MRSA-C1 and MRSA-C2, were used to test the developed formulations, as well as the positive control, vancomycin (VCM). RFB in free and liposomal forms displayed high antibacterial activity, with similar potency between tested formulations. In MRSA-C1, minimal inhibitory concentrations (MIC) for Free RFB and liposomal RFB were 0.009 and 0.013 μg/mL, respectively. Minimum biofilm inhibitory concentrations able to inhibit 50% biofilm growth (MBIC50) for Free RFB and liposomal RFB against MRSA-C1 were 0.012 and 0.008 μg/mL, respectively. Confocal microscopy studies demonstrated the rapid internalization of unloaded and RFB-loaded liposomes in the bacterial biofilm matrix. In murine models of systemic MRSA-C1 infection, Balb/c mice were treated with RFB formulations and VCM at 20 and 40 mg/kg of body weight, respectively. The in vivo results demonstrated a significant reduction in bacterial burden and growth index in major organs of mice treated with RFB formulations, as compared to Control and VCM (positive control) groups. Furthermore, the VCM therapeutic dose was two fold higher than the one used for RFB formulations, reinforcing the therapeutic potency of the proposed strategy. In addition, RFB formulations were the only formulations associated with 100% survival. Globally, this study emphasizes the potential of RFB nanoformulations as an effective and safe approach against MRSA infections.
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  • 文章类型: Journal Article
    铜绿假单胞菌(P.铜绿假单胞菌)可在身体的许多部位引起严重感染,也是一种被低估的食源性病原体。强脉冲光灭菌因其高灭菌效率而被公认,灵活安全的操作,易于在生产线上安装,弥补了其他几种物理灭菌技术的不足。
    本实验研究了不同电容(650μF,470μF,和220μF)的强脉冲光对液体食品模型模型中的食源性病原微生物铜绿假单胞菌,96孔细胞板,和聚碳酸酯膜模型在室温(25°C)和冷藏(4°C)环境下提供数据,以支持IPL灭菌装置在食品加工中的应用。
    IPL在浮游状态以及早期和成熟生物膜状态下对杀死铜绿假单胞菌非常有效,达到100%的目标杀伤率,99.99%,和94.33%对于给定数量的曝光。与浮游状态相比,在聚碳酸酯膜模型和96孔板模型中形成的生物膜对杀伤的抵抗力更强。达到同样的杀菌效果,闪烁次数随着电容的减小而增加。
    IPL对铜绿假单胞菌的杀菌效果受细菌状态的显着影响。电容越大,脉冲数越多,对铜绿假单胞菌的灭菌效果越好。
    UNASSIGNED: Pseudomonas aeruginosa (P. aeruginosa) can cause serious infections in many parts of the body and is also an underestimated foodborne pathogen. Intense pulsed light sterilization is recognized for its high sterilization efficiency, flexible and safe operation and ease of installation on production lines, which makes up for the shortcomings of several other physical sterilization technologies.
    UNASSIGNED: This experiment studied the killing efficiency of different capacitances (650 μF, 470 μF, and 220 μF) of intense pulsed light on foodborne pathogenic microorganisms P. aeruginosa in the models of liquid food models, 96-well cell plates, and polycarbonate membrane models at room temperature (25°C) and refrigerated (4°C) environments to provide data to support the application of IPL sterilization devices in food processing.
    UNASSIGNED: The IPL was very effective in killing P. aeruginosa in the planktonic state as well as in the early and mature biofilm states, meeting target kill rates of 100%, 99.99%, and 94.33% for a given number of exposures. The biofilms formed in the polycarbonate membrane model and the 96-well plate model were more resistant to killing compared to the planktonic state. To achieve the same bactericidal effect, the number of flashes increased with decreasing capacitance.
    UNASSIGNED: The bactericidal effect of IPL on P. aeruginosa was significantly influenced by the state of the bacterium. The larger the capacitance the higher the number of pulses and the better the sterilization effect on P. aeruginosa.
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  • 文章类型: Journal Article
    浮游细菌是水生生态系统的重要组成部分,与浮游动物相互作用。然而,目前还不清楚不同的浮游细菌是否有差异地干扰浮游动物对捕食者的反应。这里,我们研究了不同浮游细菌的影响,从天然湖泊中分离和纯化,关于大型蚤的反捕食(Rhodeusocellatus作为捕食者)防御反应。我们的结果表明,浮游细菌对水蚤诱导的生活史防御的影响是物种特异性的。增加的细菌(例如,大肠杆菌,citrobacterbraakii)Daphnia体型也促进了体型的诱导防御,而减少的细菌(例如,假单胞菌属。)水蚤体型也抑制了体型的诱导防御。此外,相同的细菌对诱导防御特性有不同的影响。一些细菌(例如,大肠杆菌)促进了体型的诱导防御,但减少了后代数量的诱导防御,而其他细菌(例如,嗜水气单胞菌,气单胞菌)削弱了对体型的诱导防御,但对后代数量的诱导防御没有显着影响。此外,浮游细菌对水蚤诱导防御的不同作用与细菌对海酮的降解无关。这项研究说明,第一次,浮游细菌对捕食者诱导的水蚤反应的物种特异性影响。重要性这项研究首次揭示了不同种类的浮游细菌对水蚤中鱼类kairomone诱导的防御特性和能量再分配的差异影响。我们的研究结果不仅有助于加深对水蚤在含有多种细菌的环境中的诱导性防御的理解,而且还提供了对反捕食者防御中涉及的能量重新分配的见解。
    Planktonic bacteria are an important part of aquatic ecosystems and interact with zooplankton. However, it is still unclear whether different planktonic bacteria differentially interfere with the responses of zooplankton to their predators. Here, we investigated the effects of different planktonic bacteria, which were isolated and purified from natural lakes, on the anti-predation (Rhodeus ocellatus as the predator) defense responses of Daphnia magna. Our results showed that the effects of planktonic bacteria on the induced life-history defenses of Daphnia were species-specific. Bacteria which increased (e.g., Escherichia coli, Citrobacter braakii) Daphnia body size also promoted the induced defense of body size, whereas bacteria which decreased (e.g., Pseudomonas spp.) Daphnia body size also inhibited the induced defense of body size. In addition, the same bacteria had different effects on induced defense traits. Some bacteria (e.g., E. coli) promoted the induced defense of body size but reduced the induced defense of offspring number, whereas other bacteria (e.g., Aeromonas hydrophila, Aeromonas veronas) weakened the induced defense of body size but had no significant effect on the induced defense of offspring number. Moreover, the differential effects of planktonic bacteria on Daphnia\'s induced defenses were not related to the bacterial degradation of kairomone. This study illustrated, for the first time, the species-specific effects of planktonic bacteria on predator-induced responses of Daphnia. IMPORTANCE This study is the first to reveal the differential effects of different species of planktonic bacteria on fish kairomone-induced defense traits and energy redistribution in Daphnia. Our results not only help deepen the understanding of Daphnia\'s inducible defenses in environments containing a variety of bacteria but also provide insights into the energy reallocation involved in anti-predator defenses.
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  • 文章类型: Journal Article
    洪泛区在区域环境的生态功能中起着至关重要的作用。水生环境中细菌群落的合并和合并导致由常规水文活动驱动的周期性模式,可能,反过来,影响生态活动。然而,细菌群落在横向和垂直方向上的聚结程度以及洪泛区生态系统的潜在水文机制知之甚少。因此,我们调查了黄河源区洪泛区生态系统在正常和高水位期间浮游和沉积细菌群落的时空格局和聚结过程。我们根据16SrRNA基因测序对细菌操作分类单位(OTU)进行分类,并通过计算重叠OTU的比例来量化社区合并,上游来源对下游汇的贡献,和积极/消极的凝聚力。结果表明,浮游和沉积细菌群落的组成和多样性存在重大差异。高水时期的细菌群落多样性高于正常时期。横向,水文连通性促进了细菌群落向主流和支流牛弓湖的迁移和合并,浮游细菌的聚结程度(2.9%)高于沉积细菌的聚结程度(1.7%)。垂直,主流浮游和沉积细菌群落的聚结程度最高,达到2.9%。共现网络分析显示,水文连通性增加了细菌网络的复杂性,并增强了梯形物种与牛弓湖的结合。此外,群落聚结提高了细菌群落的竞争力和分散性。这项研究表明,细菌群落的合并是由洪泛区生态系统中的水文连通性驱动的。进一步的研究应该更详细地研究洪泛区细菌群落合并的过程,为环境保护和生态功能保护提供了新的途径。
    Floodplains play essential roles in the ecological functions of regional environments. The merging and coalescence of bacterial communities in aquatic environments results in periodic patterns driven by regular hydrological activities, which may, in turn, influence ecological activities. However, the degree of bacterial community coalescence in the lateral and vertical directions as well as the underlying hydrological mechanism of floodplain ecosystems is poorly understood. Therefore, we investigated the spatiotemporal patterns and coalescence processes of planktonic and sedimentary bacterial communities during normal and high-water periods in a floodplain ecosystem of the Yellow River source region. We classified bacterial operational taxonomic units (OTUs) based on 16S rRNA gene sequencing, and quantified community coalescence by calculating the proportions of overlapping OTUs, the contributions of upstream sources to downstream sinks, and positive/negative cohesion. The results revealed major differences in the composition and diversity of planktonic and sedimentary bacterial communities. Bacterial community diversity in the high-water period was higher than in the normal period. Laterally, hydrological connectivity promoted the immigration and coalescence of bacterial communities to oxbow lakes in both the mainstream and tributaries, with the coalescence degree of planktonic bacteria (2.9%) higher than that of sedimentary bacteria (1.7%). Vertically, the coalescence degree of mainstream planktonic and sedimentary bacterial communities was highest, reaching 2.9%. Co-occurrence network analysis revealed that hydrological connectivity increased the complexity of the bacterial network and enhanced the coalescence of keystone species to oxbow lakes. Furthermore, community coalescence improved the competitiveness and dispersal of bacterial communities. This study demonstrated that coalescence of bacterial communities is driven by hydrological connectivity in a floodplain ecosystem. Further studies should investigate the processes of bacterial community coalescence in floodplains in more detail, which could provide new approaches for environmental protection and ecological function preservation.
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  • 文章类型: Journal Article
    微生物对外部环境的变化很敏感,通常用作监测和反映水质的指标。使用IlluminaMiSeq测序,分析了石后湖水体中不同时间点的微生物群落特征,并确定了影响细菌群落的关键环境因子。石后湖水体中微生物群落多样性丰富,且随时间变化表现出显著差异。主要的细菌门是蓝细菌,变形杆菌,放线菌,Verrucomicrobia,拟杆菌,氯氟菌,Planctomycetes,Firmicutes,绿虫,WS6和糖杆菌。样品中这些主要门的相对丰度占总丰度的97.83%-99.07%;蓝藻的相对丰度最高,占总数的13.07%-44.61%,各优势门的丰度在不同时间点存在显著差异。Shannon和Simpson指数显示各月的多样性为:8月>10月>7月>9月>11月。Chao1和Ace指数表明,丰富度的顺序为:11月>10月>7月>8月>9月。Beta多样性分析发现,每个月的样本存在显着差异。环境因素,如温度,总氮,叶绿素a,高锰酸盐指数,亚硝酸盐,pH和氨氮对微生物群落结构有显著影响。
    Microorganisms are sensitive to changes in the external environment and are often used as indicators to monitor and reflect water quality. Using Illumina MiSeq sequencing, the characteristics of the microbial community in Shihou Lake water at different time points were analyzed and the key environmental factors affecting the bacterial community were identified. The microbial community diversity in Shihou Lake water was rich and showed significant differences over time. The main bacterial phyla were the Cyanobacteria, Proteobacteria, Actinobacteria, Verrucomicrobia, Bacteroidetes, Chloroflexi, Planctomycetes, Firmicutes, Chlorobi, WS6 and Saccharibacteria. The relative abundance of these major phyla in the sample accounted for 97.83%-99.07% of the total abundance; Cyanobacteria had the highest relative abundance, accounting for 13.07%-44.61% of the total, and the abundance of each dominant phylum was significantly different at different time points. The Shannon and Simpson indexes showed that the diversity of each month was as follows: August > October > July > September > November. The Chao1 and Ace indexes indicated that the order of richness was: November > October > July > August > September. Beta diversity analysis found significant differences in the samples from month to month. Environmental factors such as temperature, total nitrogen, chlorophyll-a, permanganate index, nitrite, pH and ammonia nitrogen had significant effects on microbial community structure.
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  • 文章类型: Journal Article
    单核细胞增生李斯特菌是一种众所周知的食源性病原体,通常以生物膜的形式生存以应对不利的环境。细菌素已被报道为抗菌化合物,它们的杀菌作用已经被广泛研究,但是他们的抗生物膜作用很少被研究。先前的研究表明,细菌素BMP32r具有广谱抗菌活性。在这项研究中,BMP32r对浮游细菌的功效,抑制生物膜的形成,破坏成熟的生物膜,并确定了单核细胞增生李斯特菌ATCC15,313的杀伤持久性。BMP32r对浮游单核细胞增生李斯特菌具有杀菌效果。结晶紫染色显示BMP32r的亚最低抑制浓度(SIC)(1/32×MIC和1/16×MIC)显著(p<0.001)抑制生物膜形成。此外,CCK-8的结果,平板计数,钌红染色,扫描电子显微镜,实时定量PCR检测表明,BMP32r的SICs降低了细胞粘附,胞外多糖生产,仲裁感应,和毒力基因在生物膜形成中的表达。此外,较高浓度的BMP32r(2×MIC和4×MIC)通过杀死生物膜中的细菌来破坏成熟的生物膜,并有效杀死单核细胞增生李斯特菌持久性细菌。因此,BMP32r具有作为抗生物膜剂对抗单核细胞增生李斯特菌的潜力。
    Listeria monocytogenes is a well-known foodborne pathogen that usually lives as biofilm to cope with unfavorable surroundings. Bacteriocins have been reported as antimicrobial compounds, and their bactericidal actions have been extensively studied, but their antibiofilm actions have rarely been studied. Previous study indicated that bacteriocin BMP32r has a broad-spectrum antibacterial activity. In this study, the efficacy of BMP32r against the planktonic bacteria, inhibition of forming biofilm, destruction of mature biofilm, and kill persisters of L. monocytogenes ATCC 15,313 was determined. BMP32r exhibited the bactericidal effect on L. monocytogenes planktonic bacteria. Crystal violet staining showed that sub-minimum inhibitory concentrations (SICs) of BMP32r (1/32 × MIC and 1/16 × MIC) significantly (p < 0.001) inhibit the biofilm formation. In addition, the results of CCK-8, plate count, ruthenium red staining, scanning electron microscopy, and real-time quantitative PCR assay showed that SICs of BMP32r reduced cell adhesion, exopolysaccharide production, quorum sensing, and virulence genes expression in biofilm formation. Moreover, higher concentrations of BMP32r (2 × MIC and 4 × MIC) disrupt the mature biofilm by killing the bacteria in the biofilm and kill L. monocytogenes persisters bacteria effectively. Therefore, BMP32r has promising potential as an antibiofilm agent to combat L. monocytogenes.
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  • 文章类型: Journal Article
    Implant-associated bacterial infections are difficult to treat due to the tendency of biofilm formation on implant surfaces, which protects embedded pathogens from host defense and impedes antibiotic penetration, rendering systemic antibiotic injections ineffective. Here, we test the hypothesis that implant coatings that reduce bacterial colonization would make planktonic bacteria within the periprosthetic environment more susceptible to conventional systemic antibiotic treatment. We covalently grafted zwitterionic polymer brushes poly(sulfobetaine methacryate) from Ti6Al4V surface to increase the substrate surface hydrophilicity and reduce staphylococcus aureus (S. aureus) adhesion. Using a mouse femoral intramedullary (IM) canal infection model, we showed that the anti-fouling coating applied to Ti6Al4V IM implants, when combined with a single vancomycin systemic injection, significantly suppressed both bacterial colonization on implant surfaces and the periprosthetic infections, outperforming either treatment alone. This work supports the hypothesis that grafting anti-fouling polymers to implant surfaces improves the efficacy of systemic antibiotic injections to combat periprosthetic infections.
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  • 文章类型: Journal Article
    The upper reaches of the Han River are the source region of water for the Middle Route of China\'s South-to-North Water Diversion Project, mainly for household, industrial, and irrigation purposes. Planktonic bacteria are more sensitive than macroorganisms to water physical and chemical properties and play a critical role in biogeochemical processes in river ecosystems. In November 2017 and April 2018, a systematic and methodical survey was carried out to evaluate the water quality and bacterial communities, on the mainstem of the Han River and its five main tributaries. In this study, high-throughput sequencing technology has been employed to investigate the bacterioplankton community composition. The results indicated the following: (1) diversity increased downstream, especially in the upper reaches of the Han River. (2) The relative abundance of Actinobacteria increased with the increase of river length, while that of Bacteroidetes decreased slightly. (3) Five tributaries were found to be importance sources of taxa to the Han River; however, in both months, a large proportion of operational taxonomic units (37.84% and 36.34%, respectively) had unknown sources. (4) Finally, redundancy analysis (RDA) and Bioenv analysis showed that environmental parameters (pH, TN, Cond, NH4+-N, DO, NO2--N, Chl-a, and T) had a great influence (p ≤ 0.05) on the bacterioplankton community. These research results are beneficial for the managing the ecological system, protecting the tributary biodiversity, and conserving the mainstem and tributaries of the Han River basin.
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  • 文章类型: Journal Article
    关于杀虫剂对虾和大型植物等相关群体种群动态的影响的研究很少。浮游植物,微生物等。在本研究中,使用以Neocaridinapalmata和ceratophyllumdemersum(双子叶植物:ceratophyllales)为主的室内淡水系统测试了单次施用非诺维卡的效果。棕榈奈瑟菌的无观察效应浓度(NOEC)和最低观察效应浓度(LOEC),根据释放的几丁糖酶的比例,分别为6.48μg/L和27.76μg/L,剂量相关效应持续14天。主成分分析(PCA)和主响应曲线(PRC)方法的结果表明,杜鹃花的生物量和叶绿素a的浓度被抑制,同时提高了藻蓝蛋白的浓度。采用Illumina高通量测序法测定培养基中细菌和真菌的多样性。PCA和PRC的结果表明,非诺氧碳水化合物促进了光合细菌(例如蓝细菌和红杆菌属)并抑制了参与氮和硫转化的群体(例如黄杆菌属,hgcI_clade,芽孢杆菌,红霉素和根瘤菌)。还发现了对病原体如假单胞菌和Cercozoa的促进和对有益分类群的抑制,如Novosphingoum和Rhodotorula。研究结果表明,由于应用非诺维卡,水质恶化。
    Few studies have been conducted with regard to the effects of insecticides on population dynamics of shrimps and associated groups such as macrophytes, phytoplankton, microorganisms etc. In the present study, effects of a single application of fenoxycarb were tested using indoor freshwater systems dominated by Neocaridina palmata and Ceratophyllum demersum (Dicotyledons: Ceratophyllales). The no observed effect concentration (NOEC) and lowest observed effect concentration (LOEC) for the N. palmata, as scaled by liberated chitobiase, were 6.48 μg/L and 27.76 μg/L, and the dose-related effect lasted for 14 days. Results of principal components analysis (PCA) and that of principal response curves (PRC) method showed that the biomass of C. demersum and concentrations of chlorophyll-a were suppressed, while the concentrations of phycocyanin were promoted. Illumina high-throughput sequencing was adopted to determine the diversity of bacteria and fungi in the media. Result of PCA and PRC showed that the fenoxycarb promoted photosynthetic bacteria (e.g. Cyanobacteria and Rhodobacterales) and suppressed groups involved in nitrogen and sulfur the transformation (e.g. Flavobacterium, hgcI_clade, Cystobasidium, Rhodotorula and Rhizobiales). Promotion in pathogen such as Pseudomonas and Cercozoa and suppression in beneficial taxa such as Novosphingobium and Rhodotorula were also sighted. Result of study suggested a water quality deterioration due to fenoxycarb applications.
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