Phage therapy

噬菌体疗法
  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    背景:产气克雷伯菌是一种机会性病原体,可引起多种感染。由于抗生素耐药性问题日益严重,需要新型抗生素和对抗细菌感染的策略.宿主特异性噬菌体是细菌的天敌,并且可以用于噬菌体疗法作为针对细菌感染的替代治疗形式。巨型噬菌体被定义为基因组大于200kb的噬菌体。与小型噬菌体相比,大型噬菌体的研究相对较少。
    结果:一种新型噬菌体,fENko-Kae01是从商业噬菌体混合物中分离的。基因组分析显示,fENko-Kae01是一种裂解性巨型噬菌体,其基因组为360kb,编码578个预测基因。没有鉴定出高度相似的噬菌体基因组,fENko-Kae01可能是一个全新的属代表。没有与溶源性生命周期相关的已知基因,细菌毒力,或鉴定了抗生素抗性。噬菌体具有病毒形态和狭窄的宿主范围。噬菌体抗性细菌突变体在噬菌体选择下出现。全基因组测序显示,鞭毛的生物发生在四个突变体中受到影响,并且在运动性测定中证实了功能鞭毛的缺乏。此外,噬菌体fENKo-Kae01未能吸附在非活动突变体上,表明细菌鞭毛是噬菌体结合受体。
    结论:fENko-Kae01是一种新型巨型噬菌体,被认为对噬菌体治疗是安全的。fENko-Kae01使用鞭毛作为噬菌体结合受体,可能代表一个全新的属。
    BACKGROUND: Klebsiella aerogenes is an opportunistic pathogen that causes a wide variety of infections. Due to the rising problem of antibiotic resistance, novel antibiotics and strategies to combat bacterial infections are needed. Host-specific bacteriophages are natural enemies of bacteria and can be used in phage therapy as an alternative form of treatment against bacterial infections. Jumbo phages are defined as phages with genomes larger than 200 kb. Relatively few studies have been done on jumbo phages compared to smaller phages.
    RESULTS: A novel phage, fENko-Kae01, was isolated from a commercial phage cocktail. Genomic analysis revealed that fENko-Kae01 is a lytic jumbo phage with a 360 kb genome encoding 578 predicted genes. No highly similar phage genomes were identified and fENko-Kae01 may be a completely new genus representative. No known genes associated with lysogenic life cycle, bacterial virulence, or antibiotic resistance were identified. The phage had myovirus morphology and a narrow host range. Phage resistant bacterial mutants emerged under phage selection. Whole genome sequencing revealed that the biogenesis of the flagellum was affected in four mutants and the lack of functional flagellum was confirmed in motility assays. Furthermore, phage fENKo-Kae01 failed to adsorb on the non-motile mutants indicating that the bacterial flagellum is the phage-binding receptor.
    CONCLUSIONS: fENko-Kae01 is a novel jumbo bacteriophage that is considered safe for phage therapy. fENko-Kae01 uses the flagellum as the phage-binding receptor and may represent a completely novel genus.
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  • 文章类型: Journal Article
    抗菌素耐药性仍然是一个关键的全球健康问题,有必要研究替代治疗方法。随着常规小分子药物由于高弹性细菌菌株的出现而导致疗效下降,人们对替代治疗方式的潜力越来越感兴趣。作为自然存在的细菌病毒,噬菌体(或噬菌体)正被重新设想为设计特性的平台,所述特性可被定制以靶向特定细菌菌株并采用多种抗菌机制。然而,对噬菌体关键药理学特性的有限理解是将其从临床前应用转化为临床应用的主要挑战.这里,我们回顾了基于噬菌体的抗菌治疗的现代进展,并讨论了噬菌体的体内药代动力学和生物分布,解决其应用中的关键挑战,这些挑战必须克服才能成功实施临床。
    Antimicrobial resistance remains a critical global health concern, necessitating the investigation of alternative therapeutic approaches. With the diminished efficacy of conventional small molecule drugs due to the emergence of highly resilient bacterial strains, there is growing interest in the potential for alternative therapeutic modalities. As naturally occurring viruses of bacteria, bacteriophage (or phage) are being re-envisioned as a platform to engineer properties that can be tailored to target specific bacterial strains and employ diverse antibacterial mechanisms. However, limited understanding of key pharmacological properties of phage is a major challenge to translating its use from preclinical to clinical settings. Here, we review modern advancements in phage-based antimicrobial therapy and discuss the in vivo pharmacokinetics and biodistribution of phage, addressing critical challenges in their application that must be overcome for successful clinical implementation.
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  • 文章类型: Journal Article
    粪肠球菌是一种与鸡胚胎和新生雏鸡死亡率相关的流行机会性病原体,对家禽养殖构成重大挑战。在目前的研究中,粪肠球菌菌株EF6,从最近的孵化场爆发中分离出来,作为宿主细菌用于分离能够裂解粪肠球菌的新型噬菌体EFP6。透射电镜显示有六角头和短尾巴,将EFP6分类为自拟病毒科的成员。EFP6显示出对紫外线辐射的敏感性和对氯仿的抗性。EFP6的裂解周期持续时间确定为50分钟,强调其在宿主根除中的功效。最佳感染复数为0.001,EFP6表现出窄的裂解谱和对宿主菌株的强特异性。此外,EFP6在40°C和pH8.0下表现出最佳生长条件。全基因组测序揭示了一个18,147bp的基因组长度,其特征在于GC浓度为33.21%并且包含25个开放阅读框。比较基因组评估强调了它与相关噬菌体的共线性,特别是缺乏溶源性基因,从而确保遗传稳定性。这种深入的表征为理解EFP6的生物学属性及其在噬菌体治疗中的潜在利用奠定了基础。为减轻粪肠球菌相关家禽感染提供了有希望的前景。
    Enterococcus faecalis is a prevalent opportunistic pathogen associated with chicken embryonic and neonatal chick mortality, posing a significant challenge in poultry farming. In the current study, E. faecalis strain EF6, isolated from a recent hatchery outbreak, served as the host bacterium for the isolation of a novel phage EFP6, capable of lysing E. faecalis. Transmission electron microscopy revealed a hexagonal head and a short tail, classifying EFP6 as a member of the Autographiviridae family. EFP6 showed sensitivity to ultraviolet radiation and resistance to chloroform. The lytic cycle duration of EFP6 was determined to be 50 min, highlighting its efficacy in host eradication. With an optimal multiplicity of infection of 0.001, EFP6 exhibited a narrow lysis spectrum and strong specificity towards host strains. Additionally, EFP6 demonstrated optimal growth conditions at 40 °C and pH 8.0. Whole genome sequencing unveiled a genome length of 18,147 bp, characterized by a GC concentration of 33.21% and comprising 25 open reading frames. Comparative genomic assessment underscored its collinearity with related phages, notably devoid of lysogenic genes, thus ensuring genetic stability. This in-depth characterization forms the basis for understanding the biological attributes of EFP6 and its potential utilization in phage therapy, offering promising prospects for mitigating E. faecalis-associated poultry infections.
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  • 文章类型: Journal Article
    耐碳青霉烯类铜绿假单胞菌的患病率在过去十年中急剧增加,单靠抗生素不足以根除这种机会性病原体引起的感染。噬菌体疗法是一种新鲜的治疗方法,可以在富有同情心的情况下使用,特别是针对慢性病例。然而,在治疗性应用之前,有必要彻底表征病毒。我们的工作描述了新的测序噬菌体的发现,vB_PaeP-F1Pa,含有整合酶,进行系统进化分析,描述了它在生理pH和温度下的稳定性,潜伏期(40分钟),和爆裂大小(每个细菌细胞394±166个颗粒),并证明其感染MDR和XDR铜绿假单胞菌菌株的能力。此外,这种新型噬菌体能够抑制细菌在预制生物膜内的生长。本研究提供了一个路线图,以分析针对MDR和XDR铜绿假单胞菌感染的成功噬菌体治疗的基本领域,并显示含有整合酶的噬菌体也能够显示良好的体外结果,表明在任何临床使用之前进行基因组分析非常重要,以防止对患者产生不良影响。
    The prevalence of carbapenem-resistant P. aeruginosa has dramatically increased over the last decade, and antibiotics alone are not enough to eradicate infections caused by this opportunistic pathogen. Phage therapy is a fresh treatment that can be administered under compassionate use, particularly against chronic cases. However, it is necessary to thoroughly characterize the virus before therapeutic application. Our work describes the discovery of the novel sequenced bacteriophage, vB_PaeP-F1Pa, containing an integrase, performs a phylogenetical analysis, describes its stability at a physiological pH and temperature, latent period (40 min), and burst size (394 ± 166 particles per bacterial cell), and demonstrates its ability to infect MDR and XDR P. aeruginosa strains. Moreover, this novel bacteriophage was able to inhibit the growth of bacteria inside preformed biofilms. The present study offers a road map to analyze essential areas for successful phage therapy against MDR and XDR P. aeruginosa infections, and shows that a phage containing an integrase is also able to show good in vitro results, indicating that it is very important to perform a genomic analysis before any clinical use, in order to prevent adverse effects in patients.
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  • 文章类型: Journal Article
    下呼吸道感染(LRTIs)带来了巨大的全球健康负担,抗生素耐药性(AMR)的上升加剧了这种情况。多药耐药细菌的持续存在和进化加剧了替代疗法的紧迫性。这篇综述探讨了噬菌体(噬菌体)疗法作为对抗细菌性LRTI的创新解决方案。噬菌体,丰富的性质,表现出对细菌的特异性,最小的真核生物毒性,以及穿透和破坏细菌生物膜的能力,提供有针对性的感染控制方法。这篇文章从2000-2023年的系统文献综述中综合了证据,体外和体内研究,病例报告和正在进行的临床试验。它强调了噬菌体疗法与抗生素的协同潜力,动物模型中的免疫噬菌体协同作用,以及对临床应用至关重要的药效学和药代动力学。尽管结果很有希望,这篇文章承认噬菌体疗法在临床环境中处于起步阶段,抗噬菌体细菌的挑战,缺乏全面的成本效益研究。它强调需要进一步研究以优化噬菌体治疗方案并浏览噬菌体-宿主相互作用的复杂性。特别是在老年人和免疫功能低下的脆弱人群中。我们呼吁进行监管调整,以促进探索噬菌体疗法的长期效果。旨在将这种古老而新的疗法纳入主流临床实践,以应对迫在眉睫的AMR危机。
    Lower respiratory tract infections (LRTIs) present a significant global health burden, exacerbated by the rise in antimicrobial resistance (AMR). The persistence and evolution of multidrug-resistant bacteria intensifies the urgency for alternative treatments. This review explores bacteriophage (phage) therapy as an innovative solution to combat bacterial LRTIs. Phages, abundant in nature, demonstrate specificity towards bacteria, minimal eukaryotic toxicity, and the ability to penetrate and disrupt bacterial biofilms, offering a targeted approach to infection control. The article synthesises evidence from systematic literature reviews spanning 2000-2023, in vitro and in vivo studies, case reports and ongoing clinical trials. It highlights the synergistic potential of phage therapy with antibiotics, the immunophage synergy in animal models, and the pharmacodynamics and pharmacokinetics critical for clinical application. Despite promising results, the article acknowledges that phage therapy is at a nascent stage in clinical settings, the challenges of phage-resistant bacteria, and the lack of comprehensive cost-effectiveness studies. It stresses the need for further research to optimise phage therapy protocols and navigate the complexities of phage-host interactions, particularly in vulnerable populations such as the elderly and immunocompromised. We call for regulatory adjustments to facilitate the exploration of the long-term effects of phage therapy, aiming to incorporate this old-yet-new therapy into mainstream clinical practice to tackle the looming AMR crisis.
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  • 文章类型: Journal Article
    多重耐药细菌的出现无疑是全球最严重的健康威胁之一。在过去十年中,对这种威胁的一种反应是“噬菌体疗法”。据此,裂解噬菌体用于治疗细菌感染,单独或与抗微生物剂组合。然而,为了确保噬菌体疗法的有效性和广泛适用性,必须克服几个挑战。这些挑战包括开发宿主范围操纵的方法和策略,以及绕过病原菌产生的抗性机制,自抗生素问世以来一直如此。随着我们对噬菌体与其宿主之间相互作用的认识和理解的发展,关键问题是定义每个应用程序的主机范围。在这篇文章中,我们讨论了影响宿主范围的因素,以及这如何决定将噬菌体分为不同的作用类别。对于每个主机范围组,提供了最近的代表性例子,以及关于如何使用不同的群体来对抗某些类型的细菌感染的建议。用于主机范围扩展的可用方法,通过对新病原体的顺序适应或通过基因工程技术,也进行了审查。
    The emergence of multidrug-resistant bacteria is undoubtedly one of the most serious global health threats. One response to this threat that has been gaining momentum over the past decade is \'phage therapy\'. According to this, lytic bacteriophages are used for the treatment of bacterial infections, either alone or in combination with antimicrobial agents. However, to ensure the efficacy and broad applicability of phage therapy, several challenges must be overcome. These challenges encompass the development of methods and strategies for the host range manipulation and bypass of the resistance mechanisms developed by pathogenic bacteria, as has been the case since the advent of antibiotics. As our knowledge and understanding of the interactions between phages and their hosts evolves, the key issue is to define the host range for each application. In this article, we discuss the factors that affect host range and how this determines the classification of phages into different categories of action. For each host range group, recent representative examples are provided, together with suggestions on how the different groups can be used to combat certain types of bacterial infections. The available methodologies for host range expansion, either through sequential adaptation to a new pathogen or through genetic engineering techniques, are also reviewed.
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  • 文章类型: Journal Article
    沙门氏菌多重耐药性的出现,引起食源性感染,是一个重要的问题。在沙门氏菌中拥有超过2,600个血清型。,确定每个血清型的具体解决方案至关重要。噬菌体疗法作为替代治疗选择。在这项研究中,从污水中获得vB_SalP_792噬菌体,在13个测试的临床肠链球菌分离株中的8个中形成斑块。透射电子显微镜(TEM)检查显示T7样形态。噬菌体的特点是它的稳定性,生命周期,抗生物膜,和食物来源的裂解能力。噬菌体在整个温度范围内(-20至70°C)保持稳定,pH值(3-11),在氯仿和乙醚中。它还在0.0001至100的MOI范围内表现出裂解活性。生命周期显示,95%的噬菌体在3分钟内附着在其宿主上,接下来是5分钟的潜伏期,导致50PFU/单元的突发大小。vB_SalP_792噬菌体基因组具有长度为37,281bp和GC含量为51%的dsDNA。有42个编码序列(CDS),24个具有推定功能,没有抗性或毒力相关基因。vB_SalP_792噬菌体显着降低了已建立的生物膜以及蛋白中的细菌负荷。因此,vB_SalP_792噬菌体可以作为一种有效的生物防治剂,用于预防食物中的沙门氏菌感染,以及它对肠球菌临床分离株的有效裂解活性,列出了vB_SalP_792噬菌体作为未来针对耐药沙门氏菌感染的体内研究和治疗应用的成功候选者。
    The emergence of multi-drug resistance in Salmonella, causing food-borne infections, is a significant issue. With over 2,600 serovars in in Salmonella sp., it is crucial to identify specific solutions for each serovar. Phage therapy serves as an alternate treatment option. In this study, vB_SalP_792 phage was obtained from sewage, forming plaques in eight out of 13 tested clinical S. enterica isolates. Transmission electron microscopy (TEM) examination revealed a T7-like morphotype. The phage was characterized by its stability, life cycle, antibiofilm, and lytic ability in food sources. The phage remains stable throughout a range of temperatures (-20 to 70°C), pH levels (3-11), and in chloroform and ether. It also exhibited lytic activity within a range of MOIs from 0.0001 to 100. The life cycle revealed that 95% of the phages attached to their host within 3 min, followed by a 5-min latent period, resulting in a 50 PFU/cell burst size. The vB_SalP_792 phage genome has a dsDNA with a length of 37,281 bp and a GC content of 51%. There are 42 coding sequences (CDS), with 24 having putative functions and no resistance or virulence-related genes. The vB_SalP_792 phage significantly reduced the bacterial load in the established biofilms and also in egg whites. Thus, vB_SalP_792 phage can serve as an effective biocontrol agent for preventing Salmonella infections in food, and its potent lytic activity against the clinical isolates of S. enterica, sets out vB_SalP_792 phage as a successful candidate for future in vivo studies and therapeutical application against drug-resistant Salmonella infections.
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  • 文章类型: Journal Article
    牙髓和根尖周病是生物膜诱导的感染。了解牙髓生物膜的复杂性将有助于创建新的消毒策略,以消除根管系统中的微生物。复杂的运河结构为适当的消毒带来了挑战,需要了解生物膜结构,composition,和生物膜群落内的机制。本文介绍了牙髓生物膜的结构,生物膜的形成,和先进的治疗选择,以对抗根管系统内的生物膜社区。
    Pulpal and periapical pathosis are biofilm-induced infections. Understanding the complex nature of endodontic biofilm would help to create a new disinfection strategy to eliminate the microorganism from the root canal system. The intricate canal structure creates challenges for proper disinfection, necessitating the need to understand the biofilm structure, composition, and mechanism within the biofilm community. This paper describes the endodontic biofilm structure, formation of biofilm, and advanced therapeutic options for combating the biofilm community within the root canal system.
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  • 文章类型: Editorial
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