N-cadherin

N - 钙粘蛋白
  • 文章类型: Editorial
    肾上皮间质转化(EMT)是上皮细胞发生生化改变并转化为间充质样细胞的过程,导致肾脏异常,包括纤维化。EMT可通过引发肾纤维化引起糖尿病肾病,炎症,和功能损害。驱动EMT介导的肾纤维化的多种分子途径尚不完全清楚。靶向参与EMT的关键信号通路可能有助于改善糖尿病肾病和改善肾功能。在这样的设置中,准确了解复杂的信号传导网络对于开发干预EMT介导的糖尿病肾病的定制疗法至关重要.
    Renal epithelial-to-mesenchymal transition (EMT) is a process in which epithelial cells undergo biochemical changes and transform into mesenchymal-like cells, resulting in renal abnormalities, including fibrosis. EMT can cause diabetic nephropathy through triggering kidney fibrosis, inflammation, and functional impairment. The diverse molecular pathways that drive EMT-mediated renal fibrosis are not utterly known. Targeting key signaling pathways involved in EMT may help ameliorate diabetic nephropathy and improve renal function. In such settings, understanding precisely the complicated signaling networks is critical for developing customized therapies to intervene in EMT-mediated diabetic nephropathy.
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  • 文章类型: Journal Article
    在存在明显的上颌骨萎缩的情况下,使用骨内牙科植入物可能变得不可行;因此,在这种情况下,已经提出了手术技术来促进骨再生。然而,这种技术很复杂,可能会使患者出现并发症。骨膜下植入物,放置在骨膜和残余牙槽骨之间,在很大程度上与骨厚度无关。由于定位和适应受体骨部位的复杂性,此类设备已被放弃,但如今,随着新的收购程序的引入,新材料,创新的制造方法。我们已经分析了不同表面修饰的TiO2材料在C-12720人成骨细胞中诱导的基因和蛋白质表达的变化,以验证其促进骨形成的能力。测试的TiO2材料是(i)原始加工的,(ii)用酸混合物电抛光,(iii)喷砂+酸蚀,(iv)AlTiColorTM表面,和(v)阳极氧化。所有五个表面都有效刺激成骨细胞分化标志物的表达,附着力,和成骨,如RUNX2,骨钙蛋白,osterix,N-钙黏着蛋白,β-连环蛋白,和骨保护素,而细胞活力/增殖不受影响。总的来说,我们的观察表明,目前可用的TiO2材料非常适合制造现代骨膜下植入物。
    The use of endosseous dental implants may become unfeasible in the presence of significant maxillary bone atrophy; thus, surgical techniques have been proposed to promote bone regeneration in such cases. However, such techniques are complex and may expose the patient to complications. Subperiosteal implants, being placed between the periosteum and the residual alveolar bone, are largely independent of bone thickness. Such devices had been abandoned due to the complexity of positioning and adaptation to the recipient bone site, but are nowadays witnessing an era of revival following the introduction of new acquisition procedures, new materials, and innovative manufacturing methods. We have analyzed the changes induced in gene and protein expression in C-12720 human osteoblasts by differently surface-modified TiO2 materials to verify their ability to promote bone formation. The TiO2 materials tested were (i) raw machined, (ii) electropolished with acid mixture, (iii) sand-blasted + acid-etched, (iv) AlTiColorTM surface, and (v) anodized. All five surfaces efficiently stimulated the expression of markers of osteoblastic differentiation, adhesion, and osteogenesis, such as RUNX2, osteocalcin, osterix, N-cadherin, β-catenin, and osteoprotegerin, while cell viability/proliferation was unaffected. Collectively, our observations document that presently available TiO2 materials are well suited for the manufacturing of modern subperiosteal implants.
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  • 文章类型: Journal Article
    维生素A缺乏(VAD)诱导TGF-β过度活化和降低肺细胞粘附蛋白的表达,提示维甲酸(RA)信号的破坏导致上皮-间质转化(EMT)。为了阐明肺维生素A状态在EMT中的作用,几个EMT标记和前蛋白转化酶furin的表达,激活TGF-β,在两个实验模型中进行了分析。我们的体内模型包括对照大鼠,VAD大鼠,对照大鼠和VAD大鼠,用RA治疗。对于体外研究,使用RA治疗的人支气管肺泡上皮细胞。我们的数据表明,在VAD大鼠中诱导了EMT和弗林蛋白酶。此外,用RA治疗VAD大鼠后,弗林蛋白酶的表达继续显着增加。在对照大鼠和细胞系中,急性RA治疗诱导了弗林蛋白酶表达的显着增加,伴随着EMT标记的变化。ChIP测定证明RA直接调节弗林蛋白酶转录。这些结果强调了将维生素A水平保持在生理范围内的重要性,因为低于和高于该范围的维生素A水平都会引起不利影响,矛盾的是,可能是相似的。讨论了弗林蛋白酶在EMT中的作用。
    Vitamin A deficiency (VAD) induced TGF-β hyperactivation and reduced expression of cell adhesion proteins in the lung, suggesting that the disruption of retinoic acid (RA) signaling leads to epithelial-mesenchymal transition (EMT). To elucidate the role of lung vitamin A status in EMT, several EMT markers and the expression of the proprotein convertase furin, which activates TGF-β, were analyzed in two experimental models. Our in vivo model included control rats, VAD rats, and both control rats and VAD rats, treated with RA. For the in vitro studies, human bronchoalveolar epithelial cells treated with RA were used. Our data show that EMT and furin are induced in VAD rats. Furthermore, furin expression continues to increase much more markedly after treatment of VAD rats with RA. In control rats and cell lines, an acute RA treatment induced a significant increase in furin expression, concomitant with changes in EMT markers. A ChIP assay demonstrated that RA directly regulates furin transcription. These results emphasize the importance of maintaining vitamin A levels within the physiological range since both levels below and above this range can cause adverse effects that, paradoxically, could be similar. The role of furin in EMT is discussed.
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  • 文章类型: Journal Article
    膀胱癌侵袭性与N-钙粘蛋白跨膜糖蛋白表达异常相关。该蛋白质被金属蛋白酶ADAM10和γ-分泌酶复合物裂解,释放促血管生成N末端片段(NTF)和增殖激活性可溶性C末端片段(CTF2)。Tetraspanin15(Tspan15)被鉴定为ADAM10相互作用蛋白,可诱导选择性N-钙粘蛋白裂解。我们首先证明,在侵袭性T24膀胱癌细胞中,N-cadherin被ADAM10裂解,在细胞外环境中产生NTF并留下膜锚定的CTF1片段,并且Tspan15是ADAM10诱导选择性N-cadherin裂解所必需的。在癌症中靶向N-钙黏着蛋白功能与预防肿瘤进展和转移有关。对于抑制N-钙粘蛋白功能的抗肿瘤分子,它们应该是完整的,而不是分裂的。我们首先表明GW501516,核受体PPARβ/δ的激动剂,降低Tspan15并防止N-钙黏着蛋白裂解,从而降低NTF。有趣的是,该药物没有改变ADAM10的表达,这是重要的,因为它可以限制副作用,因为ADAM10切割许多底物。通过靶向Tspan15来阻断ADAM10对N-钙粘蛋白的活性,GW501516可以预防NTF肿瘤前效应,是治疗膀胱癌的有前途的分子。更有趣的是,它可以优化N-cadherin拮抗剂的作用,例如靶向N-cadherin胞外域的ADH-1。
    Bladder cancer aggressiveness is correlated with abnormal N-cadherin transmembrane glycoprotein expression. This protein is cleaved by the metalloprotease ADAM10 and the γ-secretase complex releasing a pro-angiogenic N-terminal fragment (NTF) and a proliferation-activating soluble C-terminal fragment (CTF2). Tetraspanin 15 (Tspan15) is identified as an ADAM10-interacting protein to induce selective N-cadherin cleavage. We first demonstrated, in invasive T24 bladder cancer cells, that N-cadherin was cleaved by ADAM10 generating NTF in the extracellular environment and leaving a membrane-anchored CTF1 fragment and that Tspan15 is required for ADAM10 to induce the selective N-cadherin cleavage. Targeting N-cadherin function in cancer is relevant to preventing tumor progression and metastases. For antitumor molecules to inhibit N-cadherin function, they should be complete and not cleaved. We first showed that the GW501516, an agonist of the nuclear receptor PPARβ/δ, decreased Tspan15 and prevented N-cadherin cleavage thus decreasing NTF. Interestingly, the drug did not modify ADAM10 expression, which was important because it could limit side effects since ADAM10 cleaves numerous substrates. By targeting Tspan15 to block ADAM10 activity on N-cadherin, GW501516 could prevent NTF pro-tumoral effects and be a promising molecule to treat bladder cancer. More interestingly, it could optimize the effects of the N-cadherin antagonists those such as ADH-1 that target the N-cadherin ectodomain.
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  • 文章类型: English Abstract
    研究整合素和N-cadherin介导的机械粘附对间充质干细胞极化的协同调节以及潜在的机械生物学机制。
    双层聚乙烯乙二醇(PEG)水凝胶用RGD和HAVDI肽配制和修饰,分别,实现对整合素和N-钙粘蛋白的机械粘附,并复制细胞与细胞外基质之间的整合素介导的机械相互作用以及N-钙粘蛋白介导的细胞-细胞机械相互作用。极性蛋白质,磷脂酰肌醇3-激酶(PI3K)和磷酸化肌球蛋白轻链(pMLC),在整合素介导的粘附下,通过免疫荧光染色在有或没有与HAVDI肽接触的单个细胞中进行表征,N-钙粘蛋白介导的粘附,和不同的细胞内力。使用ImageJ分析了它们的表达水平和极性分布。
    整合素介导的粘附诱导的PI3K和pMLC的极性强度明显高于无接触组,导致PI3K对β-catenin的极角浓度在135°至180°的范围内,而pMLC对β-catenin的极角浓度在0°至45°的范围内。整合素功能的抑制导致PI3K在接触基团中极性分布的抑制,但没有改变pMLC蛋白的极性分布。N-钙粘蛋白对PI3K和pMLC极性分布的影响与整合素相似。然而,抑制N-cadherin的机械粘附导致接触组中PI3K和pMLC蛋白的极性强度和极性角分布受到抑制。此外,抑制N-cadherin的机械粘附会导致整合素β1的极性强度减弱,从而降低整合素β1和β-catenin之间极性角集中在135°至180°范围内的细胞比例。此外,细胞内力影响PI3K和pMLC蛋白的极性分布。减少细胞内力削弱了PI3K和pMLC蛋白的极性强度及其极性分布,而细胞内力的增加增强了PI3K和pMLC蛋白的极性强度及其极性分布。
    整合素和N-cadherin共同调节细胞蛋白的极性分布,N-cadherin可以通过局部抑制整合素在干细胞的极性调节中起重要作用。
    UNASSIGNED: To investigate the synergistic regulation of the polarization of mesenchymal stem cells by integrin and N-cadherin-mediated mechanical adhesion and the underlying mechanobiological mechanisms.
    UNASSIGNED: Bilayer polyethylene glyeol (PEG) hydrogels were formulated and modified with RGD and HAVDI peptides, respectively, to achieve mechanical adhesion to integrin and N-cadherin and to replicate the integrin-mediated mechanical interaction between cells and the extracellular matrix and the N-cadherin-mediated cell-cell mechanical interaction. The polar proteins, phosphatidylinositol 3-kinase (PI3K) and phosphorylated myosin light chain (pMLC), were characterized through immunofluorescence staining in individual cells with or without contact with HAVDI peptides under integrin-mediated adhesion, N-cadherin-mediated adhesion, and different intracellular forces. Their expression levels and polar distribution were analyzed using Image J.
    UNASSIGNED: Integrin-mediated adhesion induced significantly higher polar strengths of PI3K and pMLC in the contact group than in those in the no contact group, resulting in the concentration of the polar angle of PI3K to β-catenin in the range of 135° to 180° and the concentration of the polar angle of pMLC to β-catenin in the range of 0° to 45° in the contact group. Inhibition of integrin function led to inhibition of the polarity distribution of PI3K in the contact group, but did not change the polarity distribution of pMLC protein. The effect of N-cadherin on the polarity distributions of PI3K and pMLC was similar to that of integrin. However, inhibition of the mechanical adhesion of N-cadherin led to inhibition of the polarity intensity and polarity angle distribution of PI3K and pMLC proteins in the contact group. Furthermore, inhibition of the mechanical adhesion of N-cadherin caused weakened polarity intensity of integrin β1, reducing the proportion of cells with polarity angles between integrin β1 and β-catenin concentrating in the range of 135° to 180°. Additionally, intracellular forces influenced the polar distribution of PI3K and pMLC proteins. Reducing intracellular forces weakened the polarity intensity of PI3K and pMLC proteins and their polarity distribution, while increasing intracellular forces enhanced the polarity intensity of PI3K and pMLC proteins and their polarity distribution.
    UNASSIGNED: Integrin and N-cadherin co-regulate the polarity distribution of cell proteins and N-cadherin can play an important role in the polarity regulation of stem cells through local inhibition of integrin.
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  • 文章类型: Journal Article
    集体细胞迁移是生物体和成虫发育的基础,用于组织再生和病理状况,如癌症。作为一个连贯的群体,迁移需要维持细胞间的相互作用,而运动接触抑制(CIL),局部斥力,可以推动团队前进。这里我们展示了细胞-细胞相互作用分子,N-钙黏着蛋白,调节大鼠雪旺细胞(SC)集体迁移过程中的粘附和排斥过程,这是周围神经再生所必需的。然而,与其在细胞-细胞粘附中的作用不同,排斥过程与N-钙黏着蛋白的反式同二聚化和相关的粘附连接复合物无关。相反,需要N-钙粘蛋白的胞外结构域以在细胞表面呈现排斥性Slit2/Slit3信号。抑制Slit2/Slit3信号抑制CIL并随后集体施万细胞迁移,导致粘附,非迁移细胞簇。此外,对坐骨神经损伤后小鼠离体外植体的分析表明,抑制Slit2可降低雪旺氏细胞的集体迁移,并增加神经桥内雪旺氏细胞的聚集。这些发现提供了有关相反信号如何介导集体细胞迁移的见解,以及hhCIL途径如何成为抑制病理性细胞迁移的有希望的靶标。
    Collective cell migration is fundamental for the development of organisms and in the adult for tissue regeneration and in pathological conditions such as cancer. Migration as a coherent group requires the maintenance of cell-cell interactions, while contact inhibition of locomotion (CIL), a local repulsive force, can propel the group forward. Here we show that the cell-cell interaction molecule, N-cadherin, regulates both adhesion and repulsion processes during Schwann cell (SC) collective migration, which is required for peripheral nerve regeneration. However, distinct from its role in cell-cell adhesion, the repulsion process is independent of N-cadherin trans-homodimerisation and the associated adherens junction complex. Rather, the extracellular domain of N-cadherin is required to present the repulsive Slit2/Slit3 signal at the cell surface. Inhibiting Slit2/Slit3 signalling inhibits CIL and subsequently collective SC migration, resulting in adherent, nonmigratory cell clusters. Moreover, analysis of ex vivo explants from mice following sciatic nerve injury showed that inhibition of Slit2 decreased SC collective migration and increased clustering of SCs within the nerve bridge. These findings provide insight into how opposing signals can mediate collective cell migration and how CIL pathways are promising targets for inhibiting pathological cell migration.
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  • 文章类型: Journal Article
    子宫内膜癌是最常见的妇科恶性肿瘤。本研究旨在评估E-cadherin和N-cadherin在原发性子宫内膜病变和宫颈内膜中的表达,以确定非侵入性预测因素。在这项单中心回顾性研究中,收集了101例接受EC手术的患者的数据.根据肿瘤分级评估E-cadherin和N-cadherin的免疫组织化学表达,location,和细胞分化。确定了宫颈内膜和原发性肿瘤中E-钙粘蛋白和N-钙粘蛋白水平之间的相关性。组织学肿瘤分化程度显着影响E-cadherin表达(p=0.04),但对N-cadherin水平没有影响。在II型EC中,两种钙黏着蛋白在肿瘤组织中的表达与其宫颈内膜水平不同。E-cadherin的表达在宫颈内膜(p<0.001)和肿瘤(p=0.001)之间存在显着差异,取决于EC的类型。E-cadherin的表达仅与II型EC患者宫颈内膜中的N-cadherin水平相关(p=0.02)。E-cadherin和N-cadherin在EC患者宫颈内膜中表达。钙黏着蛋白的表达,在宫颈细胞学检查中确定,可能是EC的一个有价值的临床标志物。
    Endometrial cancer (EC) is the most common gynecological malignancy. This study aimed to evaluate the expression of E-cadherin and N-cadherin in primary endometrial lesions and the endocervix in patients with EC to identify noninvasive predictive factors. In this single-center retrospective study, data on 101 patients who underwent surgery for EC were collected. The immunohistochemical expression of E-cadherin and N-cadherin was assessed depending on the tumor grade, location, and cell differentiation. Correlations between E-cadherin and N-cadherin levels in the endocervix and the primary tumor were determined. The degree of histological tumor differentiation significantly affected E-cadherin expression (p = 0.04) but had no impact on N-cadherin levels. In type II EC, the expression of both cadherins in the tumor tissue differed from their endocervical levels. The expression of E-cadherin differed significantly between the endocervix (p < 0.001) and the tumor (p = 0.001), depending on the type of EC. The expression of E-cadherin was related to the N-cadherin level only in the endocervix in patients with type II EC (p = 0.02). E-cadherin and N-cadherin were expressed in the endocervix in patients with EC. The expression of cadherins, determined during cervical cytology, may be a valuable clinical marker of EC.
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  • 文章类型: Journal Article
    背景:上皮-间质转化(EMT)能够促进肿瘤细胞的侵袭和转移。许多研究表明EMT在口腔鳞状细胞癌(OSCC)淋巴结转移中的关键作用。EMT期间,上皮性癌细胞失去细胞间粘附和顶端-基底极性,并获得间充质特性,如运动性和侵袭性。EMT的一个显著特征是钙粘蛋白的转换,涉及E-cadherin的下调和N-cadherin的上调。TGF-β/SMAD途径也可诱导EMT。我们旨在评估EMT标志物作为OSCC淋巴结转移的预测因子。
    方法:我们对来自TCGA的159个原发性OSCC进行了遗传分析,并分析了EMT标记的表达,包括钙粘蛋白开关基因(CDH1,CDH2),和TGF-β/SMAD通路基因。将样品分为晚期(III-IV期)和早期(I-II期)阶段组。进行差异表达分析,以及包含新鲜OSCC样本的独立验证研究。
    结果:TGF-β/SMAD通路基因如SMAD6在晚期肿瘤中上调。N-cadherin和SNAIL2在淋巴结阳性肿瘤中过表达。角蛋白在这些组中下调。
    结论:我们的研究结果表明,在OSCC中,EMT标志物的表达与淋巴结转移相关。开发靶向调节因子如N-钙粘蛋白的疗法可以预防转移并改善结果。
    BACKGROUND: Epithelial-mesenchymal transition (EMT) enables tumor cell invasion and metastasis. Many studies have demonstrated the critical role of EMT in lymph node metastasis in oral squamous cell carcinoma (OSCC). During EMT, epithelial cancer cells lose intercellular adhesion and apical-basal polarity and acquire mesenchymal properties such as motility and invasiveness. A significant feature of EMT is cadherin switching, involving the downregulation of E-cadherin and upregulation of N-cadherin. The TGF-β/SMAD pathway can also induce EMT. We aimed to evaluate EMT markers as predictors of lymph node metastasis in OSCC.
    METHODS: We performed genetic profiling of 159 primary OSCCs from TCGA and analyzed the expression of EMT markers, including cadherin switch genes (CDH1, CDH2), and TGF-β/SMAD pathway genes. Samples were divided into advanced (stage III-IV) and early (stage I-II) stage groups. Differential expression analysis was performed, as well as an independent validation study containing fresh OSCC samples.
    RESULTS: TGF-β/SMAD pathway genes such as SMAD6 were upregulated in advanced stage tumors. N-cadherin and SNAIL2 were overexpressed in node-positive tumors. Keratins were downregulated in these groups.
    CONCLUSIONS: Our findings demonstrate that EMT marker expression correlates with lymph node metastasis in OSCC. Developing therapies targeting regulators such as N-cadherin may prevent metastasis and improve outcomes.
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  • 文章类型: Journal Article
    Lgl1蛋白在神经发育中起关键作用,包括海马,嗅觉灯泡,和浦肯野细胞。然而,中脑LGL1功能的具体机制仍然难以捉摸。在这项研究中,我们使用Pax2-Cre产生了Lgl1条件性敲除小鼠,在中脑表达,并检查了Lgl1在中脑的功能。组织学分析显示中脑发育异常,其特征是心室导水管增大和顶盖皮质变薄。Lgl1缺失导致LPcko小鼠顶盖中神经祖细胞的过度增殖和凋亡增加。BrdU标记研究表明神经元迁移异常。Nestin的免疫荧光分析显示神经胶质细胞纤维的不规则和聚集分布,使用用于免疫荧光标记的粘附连接标记N-cadherin,揭示LPcko小鼠顶盖内异常的上皮连接。目前的研究结果表明,Lgl1的缺失导致N-cadherin表达模式的破坏,导致中脑发育异常.
    Lgl1 protein plays a critical role in neurodevelopment, including hippocampus, olfactory bulb, and Purkinje cell. However, the specific mechanism of LGL1 function in the midbrain remains elusive. In this study, we generated Lgl1 conditional knockout mice using Pax2-Cre, which is expressed in the midbrain, and examined the functions of Lgl1 in the midbrain. Histological analysis exhibited abnormal midbrain development characterized by enlarged ventricular aqueduct and thinning tectum cortex. Lgl1 deletion caused excessive proliferation and heightened apoptosis of neural progenitor cells in the tectum of LP cko mice. BrdU labeling studies demonstrated abnormal neuronal migration. Immunofluorescence analysis of Nestin demonstrated an irregular and clustered distribution of glial cell fibers, with the adhesion junction marker N-cadherin employed for immunofluorescent labeling, unveiling abnormal epithelial connections within the tectum of LP cko mice. The current findings suggest that the deletion of Lgl1 leads to the disruption of the expression pattern of N-cadherin, resulting in abnormal development of the midbrain.
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  • 文章类型: Journal Article
    特发性肺纤维化(IPF)的特征是由于过度的胶原蛋白产生和组织疤痕而导致的进行性肺功能障碍。尽管最近取得了进展,分子机制尚不清楚。
    RNA测序鉴定了TGF-β1诱导的原发性肺纤维化模型中的475个差异表达基因(DEGs)。使用GEO2R分析来自NCBI基因表达综合(GEO)数据库的基因表达芯片GSE101286和GSE110147,揭示IPF肺组织样本中的94个DEG。基因本体论(GO)和途径富集,蛋白质-蛋白质相互作用(PPI)网络构建,并进行最大集团中心性(MCC)评分。实验验证包括RT-qPCR,免疫组织化学(IHC),和西方印迹,siRNA用于基因敲低。通过GeneMANIA构建共表达网络。
    GO富集强调了TGF-β细胞反应中DEGs的显着富集,结缔组织发育,细胞外基质成分,和信号通路,如AGE-RAGE信号通路和ECM-受体相互作用。PPI网络分析确定了枢纽基因,包括FN1、COL1A1、POSTN、KIF11和ECT2。CALD1(Caldesmon1),CDH2(钙黏着蛋白2),和POSTN(Periostin)在RNA测序和GEO数据集中都被鉴定为异常调节的hub基因。验证实验证实了在TGF-β1处理的成纤维细胞和IPF肺组织样品中CALD1、CDH2和POSTN的上调。IHC实验探测了这三种分子的组织水平表达模式。CALD1,CDH2和POSTN的敲除减弱了对原代成纤维细胞中TGF-β1刺激的纤维化标志物(胶原蛋白I和α-SMA)的表达。共表达分析揭示了hub基因和预测的参与肌动蛋白细胞骨架调节和细胞-细胞连接组织的基因之间的相互作用。
    CALD1、CDH2和POSTN,被确定为肺纤维化的潜在贡献者,为IPF患者提供了有希望的治疗目标。
    Idiopathic pulmonary fibrosis (IPF) is characterized by progressive lung dysfunction due to excessive collagen production and tissue scarring. Despite recent advancements, the molecular mechanisms remain unclear.
    RNA sequencing identified 475 differentially expressed genes (DEGs) in the TGF-β1-induced primary lung fibrosis model. Gene expression chips GSE101286 and GSE110147 from NCBI gene expression omnibus (GEO) database were analyzed using GEO2R, revealing 94 DEGs in IPF lung tissue samples. The gene ontology (GO) and pathway enrichment, Protein-protein interaction (PPI) network construction, and Maximal Clique Centrality (MCC) scoring were performed. Experimental validation included RT-qPCR, Immunohistochemistry (IHC), and Western Blot, with siRNA used for gene knockdown. A co-expression network was constructed by GeneMANIA.
    GO enrichment highlighted significant enrichment of DEGs in TGF-β cellular response, connective tissue development, extracellular matrix components, and signaling pathways such as the AGE-RAGE signaling pathway and ECM-receptor interaction. PPI network analysis identified hub genes, including FN1, COL1A1, POSTN, KIF11, and ECT2. CALD1 (Caldesmon 1), CDH2 (Cadherin 2), and POSTN (Periostin) were identified as dysregulated hub genes in both the RNA sequencing and GEO datasets. Validation experiments confirmed the upregulation of CALD1, CDH2, and POSTN in TGF-β1-treated fibroblasts and IPF lung tissue samples. IHC experiments probed tissue-level expression patterns of these three molecules. Knockdown of CALD1, CDH2, and POSTN attenuated the expression of fibrotic markers (collagen I and α-SMA) in response to TGF-β1 stimulation in primary fibroblasts. Co-expression analysis revealed interactions between hub genes and predicted genes involved in actin cytoskeleton regulation and cell-cell junction organization.
    CALD1, CDH2, and POSTN, identified as potential contributors to pulmonary fibrosis, present promising therapeutic targets for IPF patients.
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