CONSORT

CONSORT
  • 文章类型: Journal Article
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  • 文章类型: Preprint
    开发文本分类模型,以确定CONSORT报告指南中的清单项目是否在随机对照试验出版物中报告。
    使用在句子级别注释的语料库,其中包含37个细粒度的CONSORT项目,我们训练了几个句子分类模型(PubMedBERT微调,BioGPT微调,以及与GPT-4的上下文学习),并比较了它们的性能。为了解决训练数据集小的问题,我们使用了几种数据增强方法(EDA,UMLS-EDA,使用GPT-4进行文本生成和改写),并评估了它们对经过微调的PubMedBERT模型的影响。我们还微调了PubMedBERT模型,仅限于与特定部分相关的清单项目(例如,方法),以评估与单个完整模型相比,此类模型是否可以提高性能。我们进行了5倍交叉验证和报告精度,召回,F1得分,和曲线下面积(AUC)。
    经过微调的PubMedBERT模型,该模型以句子和周围的句子表示形式作为输入,并使用部分标题产生了最佳的整体性能(0.71micro-F1,0.64宏-F1)。数据增加的积极作用有限,UMLS-EDA产生的结果比使用GPT-4的数据增强略好。BioGPT微调和GPT-4上下文学习表现出次优结果。特定于方法的模型对方法项目产生了更高的性能,其他部分特定模型没有显著影响.
    使用经过微调的PubMedBERT模型可以很好地识别大多数CONSORT清单项目,但仍有改进的空间。改进的模型可以支持期刊编辑工作流程和CONSORT依从性检查,并可以帮助作者提高其手稿的报告质量和完整性。
    UNASSIGNED: To develop text classification models for determining whether the checklist items in the CONSORT reporting guidelines are reported in randomized controlled trial publications.
    UNASSIGNED: Using a corpus annotated at the sentence level with 37 fine-grained CONSORT items, we trained several sentence classification models (PubMedBERT fine-tuning, BioGPT fine-tuning, and in-context learning with GPT-4) and compared their performance. To address the problem of small training dataset, we used several data augmentation methods (EDA, UMLS-EDA, text generation and rephrasing with GPT-4) and assessed their impact on the fine-tuned PubMedBERT model. We also fine-tuned PubMedBERT models limited to checklist items associated with specific sections (e.g., Methods) to evaluate whether such models could improve performance compared to the single full model. We performed 5-fold cross-validation and report precision, recall, F1 score, and area under curve (AUC).
    UNASSIGNED: Fine-tuned PubMedBERT model that takes as input the sentence and the surrounding sentence representations and uses section headers yielded the best overall performance (0.71 micro-F1, 0.64 macro-F1). Data augmentation had limited positive effect, UMLS-EDA yielding slightly better results than data augmentation using GPT-4. BioGPT fine-tuning and GPT-4 in-context learning exhibited suboptimal results. Methods-specific model yielded higher performance for methodology items, other section-specific models did not have significant impact.
    UNASSIGNED: Most CONSORT checklist items can be recognized reasonably well with the fine-tuned PubMedBERT model but there is room for improvement. Improved models can underpin the journal editorial workflows and CONSORT adherence checks and can help authors in improving the reporting quality and completeness of their manuscripts.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    背景:尽管临床试验对于提供干预对儿童和青少年影响的证据至关重要,仍然缺乏已发表的高质量儿科临床试验.对批判性评估和综合研究结果所必需的关键试验要素的次优报告很普遍。协调儿科对照临床试验方案和报告并为报告提供指导,标准方案项目的报告指南扩展:针对儿科的介入试验建议(SPIRIT)和综合报告试验标准(CONSORT)指南正在制定中:SPIRIT-儿童(SPIRIT-C)和CONSORT-儿童(CONSORT-C)。
    方法:SPIRIT-C/CONSORT-C的开发将通过增强健康研究质量的质量和透明度(EQUATOR)方法在以下阶段报告指南开发:(1)生成候选项目的初步列表,了解以下情况:(a)在最初的发展努力中开发的项目以及最近发布的SPIRIT和CONSORT扩展中与儿童有关的项目;(b)对文献进行两次系统回顾和环境扫描;(c)与年轻人的讲习班;(2)国际德尔菲研究,广泛的小组成员将以9点李克特量表对候选项目的包括或排除进行投票;(3)举行共识会议,讨论在德尔福研究中未达成共识的项目,并“锁定”清单项目;(4)对项目和定义进行试点测试,以确保它们是可理解的,有用的,和适用;以及(5)最终项目会议,以在试点测试结果的背景下讨论每个项目。关键合作伙伴,包括年轻人(12-24岁)和家庭照顾者(例如,父母)有儿科临床试验的亲身经历,在整个项目中,具有专业知识和参与儿科试验的个人将参与其中。SPIRIT-C/CONSORT-C将通过出版物传播,学术会议,并得到儿科期刊和相关研究网络和组织的认可。
    结论:SPIRIT/CONSORT-C可作为促进全面报告所需的资源,以了解儿科临床试验方案和报告,这可以提高儿科临床试验的透明度,减少研究浪费。
    背景:这些报告指南的开发已在EQUATOR网络:SPIRIT-Children(https://www。equator-network.org/library/reporting-guidelines-under-development/reporting-guidelines-under-development-for-clinical-tries-protocols/#35)andCONSORT-Children(https://www.equator-network.org/library/reporting-guidelines-under-development/reporting-guidelines-under-development-for-clinical-trials/#CHILD).
    BACKGROUND: Despite the critical importance of clinical trials to provide evidence about the effects of intervention for children and youth, a paucity of published high-quality pediatric clinical trials persists. Sub-optimal reporting of key trial elements necessary to critically appraise and synthesize findings is prevalent. To harmonize and provide guidance for reporting in pediatric controlled clinical trial protocols and reports, reporting guideline extensions to the Standard Protocol Items: Recommendations for Interventional Trials (SPIRIT) and Consolidated Standards of Reporting Trials (CONSORT) guidelines specific to pediatrics are being developed: SPIRIT-Children (SPIRIT-C) and CONSORT-Children (CONSORT-C).
    METHODS: The development of SPIRIT-C/CONSORT-C will be informed by the Enhancing the Quality and Transparency of Health Research Quality (EQUATOR) method for reporting guideline development in the following stages: (1) generation of a preliminary list of candidate items, informed by (a) items developed during initial development efforts and child relevant items from recent published SPIRIT and CONSORT extensions; (b) two systematic reviews and environmental scan of the literature; (c) workshops with young people; (2) an international Delphi study, where a wide range of panelists will vote on the inclusion or exclusion of candidate items on a nine-point Likert scale; (3) a consensus meeting to discuss items that have not reached consensus in the Delphi study and to \"lock\" the checklist items; (4) pilot testing of items and definitions to ensure that they are understandable, useful, and applicable; and (5) a final project meeting to discuss each item in the context of pilot test results. Key partners, including young people (ages 12-24 years) and family caregivers (e.g., parents) with lived experiences with pediatric clinical trials, and individuals with expertise and involvement in pediatric trials will be involved throughout the project. SPIRIT-C/CONSORT-C will be disseminated through publications, academic conferences, and endorsement by pediatric journals and relevant research networks and organizations.
    CONCLUSIONS: SPIRIT/CONSORT-C may serve as resources to facilitate comprehensive reporting needed to understand pediatric clinical trial protocols and reports, which may improve transparency within pediatric clinical trials and reduce research waste.
    BACKGROUND: The development of these reporting guidelines is registered with the EQUATOR Network: SPIRIT-Children ( https://www.equator-network.org/library/reporting-guidelines-under-development/reporting-guidelines-under-development-for-clinical-trials-protocols/#35 ) and CONSORT-Children ( https://www.equator-network.org/library/reporting-guidelines-under-development/reporting-guidelines-under-development-for-clinical-trials/#CHILD ).
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  • 文章类型: Journal Article
    这项研究的目的是探索青光眼随机对照试验摘要中对合并报告试验标准(CONSORT)报告标准的遵守情况。对上述摘要进行了横断面观察研究,2017年至2021年期间在MEDLINE/PubMed中索引。总的来说,302篇摘要符合纳入标准,并进行了进一步分析。CONSORT-A项目的中位数得分为8分(四分位距,7-10)中的17个(47.0%)。大多数分析研究是在单个中心进行的(80.5%),摘要主要是结构化的(95.0%)。只有20.5%的摘要充分描述了试验设计,而6.0%的摘要描述了随机化和资助。较高的总分与结构化摘要相关,多中心设置,具有统计学意义的结果,行业资助,更多的参与者,并在影响因子高于4的期刊上发表(分别为p<0.001)。这项研究的结果表明,对CONSORT-A报告标准的依从性欠佳,特别是在诸如随机化和资助之类的特定项目中。由于这些因素可能有助于提高试验的整体质量,并将试验结果进一步转化为临床实践,需要提高青光眼研究报告的透明度.
    The aim of this study was to explore adherence to the Consolidated Standards of Reporting Trials (CONSORT) reporting standards in abstracts of randomized controlled trials on glaucoma. A cross-sectional observational study was conducted on the aforementioned abstracts, indexed in MEDLINE/PubMed between the years 2017 and 2021. In total, 302 abstracts met the inclusion criteria and were further analyzed. The median score of CONSORT-A items was 8 (interquartile range, 7-10) out of 17 (47.0%). Most analyzed studies were conducted in a single center (80.5%) and the abstracts were predominantly structured (95.0%). Only 20.5% of the abstracts adequately described the trial design, while randomization and funding were described by 6.0% of the abstracts. Higher overall scores were associated with structured abstracts, a multicenter setting, statistically significant results, funding by industry, a higher number of participants, and having been published in journals with impact factors above four (p < 0.001, respectively). The results of this study indicate a suboptimal adherence to CONSORT-A reporting standards, especially in particular items such as randomization and funding. Since these factors could contribute to the overall quality of the trials and further translation of trial results into clinical practice, an improvement in glaucoma research reporting transparency is needed.
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  • 文章类型: Journal Article
    近几十年来,日本猕猴(Macacafuscata)已成为研究同性恋行为的关键物种。具有非概念性,他们的同性配偶关系表明,个体伴侣的偏好可以存在于直接的生殖利益或明显的社会性策略之外。一个悬而未决的问题是,合作伙伴之间的共同行为是否直接影响他们与合作伙伴在一起的选择。通过这项研究,我们研究了这些滥交和双性灵长类动物中潜在的交配时间模式的行为方面。虽然这些模式可能与同性恋和异性恋聚居有关,我们的研究主要集中在女性对。我们假设配偶的稳定性(持续时间和发生)受一对的性行为的影响,相互性刺激,以及涉及高强度身体接触的紧密关联行为。在一个交配季节观察到半自由的日本猕猴种群。总的来说,分析了40小时的女性-女性配偶行为的局灶性数据。46%的性成熟女性从事同性恋互动。我们对女性-女性对的行为分析发现,身体密切接触,而不是修饰或性行为,与同性恋群体的稳定性相关。参与的一对拥挤和拥抱的数量越多,他们就越有可能在一起再次团聚。然而,安装的频率,摩擦或推力对种群稳定性没有明显影响。因此,这项研究的结果为滥交灵长类动物的伴侣素质以及日本猕猴的同性恋行为的群体间差异增加了重要知识。
    The Japanese macaque (Macaca fuscata) has become a key species for studying homosexual behavior over recent decades. With the non-conceptive nature, their same-sex consortships illustrate that individual partner preferences can exist beyond direct reproductive benefits or apparent sociosexual strategies. An open question is whether the behavior shared between partners in consortship directly affects their choice to remain with a partner. With this study, we examined behavioral aspects underlying consortship temporal patterns in these promiscuous and bisexual primates. While these patterns could be relevant in both homo- and heterosexual consortships, our study primarily focused on female-female pairs. We hypothesized that the stability of consortships (duration and occurrence) is influenced by a pair\'s sexual behavior, mutual sexual stimulation, and close affiliative inter-mount behaviors involving high-intensity body contact. A semi-free population of Japanese macaques was observed over one mating season. In total, 40 h of focal data on female-female consortship behaviors were analyzed. Forty-six percent of all sexually mature females engaged in homosexual interactions. Our behavioral analyses of female-female pairs found that close body contact, rather than grooming or sexual interactions, was correlated with the stability of homosexual consortships. The greater the amount of huddling and embracing a pair engaged in, the more likely they were to stay together and reunite again. However, the frequency of mounting, rubbing or thrusting had no discernable effect on consortship stability. The results of this study thus add important knowledge to partner qualities in promiscuous primates as well as to inter-group differences of homosexual behavior in Japanese macaques.
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  • 文章类型: Journal Article
    本研究旨在评估牙周病随机临床试验(RCTs)的报告质量。三个领先的牙周病杂志,牙周病学杂志(JOP),临床牙周学杂志(JOCP),和牙周研究杂志(JOPR),被选中参加这次调查。通过手动搜索在这三个期刊上发表的人类试验文章来鉴定RCT。两位作者独立进行了文献检索,并使用预试点提取表来筛选潜在的随机对照试验。使用CONSORT检查表指南来计算得分值。在最初的数据收集三个月后,由第一考官进行的第二轮中,对10%的论文进行随机抽样,以评估内部考官的可靠性。对五年内发表的摘要进行搜索,得出176篇报道RCT的文章,占三种期刊发表的所有文章的11.7%。RCT的数量最多的是在2020年,其中一半以上的RCT(51%)来自欧洲。许多分析的RCT未充分报告CONSORT清单上几乎一半的项目。此外,单因素分析显示,某些因素与总体CONSORT得分之间存在显著关联,例如JOP中的出版物(p=0.048),2019年(p=0.041)和2021年(p=0.042),第一作者来自北美(p=0.016),和RCT超过6位作者(p=0.042)。在过去的五年中,牙周病的临床试验研究取得了重大进展。然而,在遵守CONSORT准则方面还有改进的余地。
    This study aimed to evaluate the reporting quality of randomized clinical trials (RCTs) in periodontology. Three leading periodontology journals, the Journal of Periodontology (JOP), the Journal of Clinical Periodontology (JOCP), and the Journal of Periodontal Research (JOPR), were selected for this investigation. The RCTs were identified by manually searching for human trial articles published in these three journals. Two authors independently conducted the literature search, and a pre-piloted extraction sheet was used to screen the potential RCTs. The CONSORT checklist guidelines were employed to calculate the score value. Intra-examiner reliability was assessed by scoring a random sample of 10% of the papers in a second round conducted by the first examiner three months after the initial data collection. A search of abstracts published over a five-year period yielded 176 articles that reported RCTs, accounting for 11.7% of all articles published in the three journals. The highest number of RCTs was published in 2020, and more than half of the included RCTs (51%) originated from Europe. Many of the analyzed RCTs inadequately reported almost half of the items on the CONSORT checklist. Furthermore, univariate analysis revealed significant associations between certain factors and the overall CONSORT score, such as publication in JOP (p = 0.048), publication year of 2019 (p = 0.041) and 2021 (p = 0.042), first author from North America (p = 0.016), and RCTs with more than six authors (p = 0.042). Clinical trial research in periodontics has made significant progress in the past five years. However, there is room for improvement in adhering to the CONSORT guidelines.
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  • 文章类型: Journal Article
    创建有效的饮食指导需要严格的证据基础,这些证据主要来自可靠的临床试验或大规模的队列研究。可用数据的质量取决于报告的完整性和准确性。来自12个不同国家和五大洲的14个机构的国际学者小组,代表欧洲营养协会联合会在其“提高营养科学标准”倡议中工作,审查了与营养试验有关的合并报告试验标准(CONSORT)声明清单。此透视文件记录了在该小组先前发布的清单上获得输入和共识所遵循的程序,包括其在国际营养科学联合会2022年国际营养大会(IANS-ICN22)上的介绍和讯问,来自期刊编辑调查的投入,并在八种不同设计的营养试验中进行试验。总的来说,这项倡议得到了相当大的热情。在IUNS-ICN22上,通过与参与的营养科学家进行的世界咖啡馆方法讨论,对我们的提案进行了改进。特约期刊编辑提供了宝贵的见解,讨论导致开发了一种潜在的工具,用于评估对拟议的营养扩展清单的遵守情况。拟议清单的试点提供了来自现实生活研究的证据,表明营养试验的报告可以得到改善。该计划旨在促进进一步讨论和开发针对CONSORT营养的扩展。
    Creating effective dietary guidance requires a rigorous evidence base that is predominantly developed from robust clinical trials or large-scale cohort studies, with the quality of the data available depending on the completeness and accuracy of their reporting. An international group of academics from 14 institutions in 12 different countries and on 5 continents, working on behalf of the Federation of European Nutrition Societies within its \"Improving Standards in the Science of Nutrition\" initiative, reviewed the Consolidated Standards of Reporting Trials (CONSORT) statement checklist as it pertains to nutrition trials. This perspective piece documents the procedure followed to gain input and consensus on the checklist previously published by this group, including its presentation and interrogation at the International Union of Nutritional Sciences International Congress of Nutrition 2022 (IUNS-ICN 22), inputs from a survey of journal editors, and its piloting on 8 nutrition trials of diverse designs. Overall, the initiative has been met with considerable enthusiasm. At IUNS-ICN 22, refinements to our proposal were elicited through a World Café method discussion with participating nutrition scientists. The contributing journal editors provided valuable insights, and the discussion led to the development of a potential tool specific to assess adherence to the proposed nutrition extension checklist. The piloting of the proposed checklist provided evidence from real-life studies that reporting of nutrition trials can be improved. This initiative aims to stimulate further discussion and development of a CONSORT-nutrition-specific extension.
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  • 文章类型: Journal Article
    目的:描述随时间变化的随机对照试验(RCT)方法报告。
    方法:我们使用了基于CONSORT语句的基于深度学习的句子分类模型,考虑报告RCT的最低要求。我们纳入了1966年至2018年之间发布的176,469份RCT报告。我们分析了5年时间段内的报告趋势,从1966-1990年在一个单一的阶层分组试验。我们还探讨了期刊影响因子(JIF)和医学学科的影响。
    结果:人口,干预,比较器,结果(PICO)项目通常在每个时期报告,并且报告随着时间的推移而增加(例如,干预:1966-1990年为79.1%,2010-2018年为87.5%)。一些方法信息的报告有所增加,虽然还有改进的空间(例如,序列生成:10.8%至41.8%)。有些项目不经常报告(例如,分配隐瞒:5.1%至19.3%)。报告的项目数和JIF弱相关(皮尔逊的r(162,702)=0.16,p<.001)。学科之间报告的项目比例差异很小(<10%)。
    结论:我们的分析为RCT方法报告随着时间的推移而改善的假设提供了大规模的定量支持。将这些模型扩展到所有CONSORT项目可以促进手稿创作和同行评审期间的合规性检查,并支持元研究。
    To describe randomized controlled trial (RCT) methodology reporting over time.
    We used a deep learning-based sentence classification model based on the Consolidated Standards of Reporting Trials (CONSORT) statement, considered minimum requirements for reporting RCTs. We included 176,469 RCT reports published between 1966 and 2018. We analyzed the reporting trends over 5-year time periods, grouping trials from 1966 to 1990 in a single stratum. We also explored the effect of journal impact factor (JIF) and medical discipline.
    Population, Intervention, Comparator, Outcome (PICO) items were commonly reported during each period, and reporting increased over time (e.g., interventions: 79.1% during 1966-1990 to 87.5% during 2010-2018). Reporting of some methods information has increased, although there is room for improvement (e.g., sequence generation: 10.8-41.8%). Some items are reported infrequently (e.g., allocation concealment: 5.1-19.3%). The number of items reported and JIF are weakly correlated (Pearson\'s r (162,702) = 0.16, P < 0.001). The differences in the proportion of items reported between disciplines are small (<10%).
    Our analysis provides large-scale quantitative support for the hypothesis that RCT methodology reporting has improved over time. Extending these models to all CONSORT items could facilitate compliance checking during manuscript authoring and peer review, and support metaresearch.
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    文章类型: Journal Article
    观察和试验文献中报告的适当方法对于解释和实施至关重要。
    评估皮肤病学文献中报告依从性的方法,并将其与内科(IM)文献进行比较。
    我们对2014-2018年间发表的随机选择的皮肤病学和IM手稿进行了横断面审查。从PubMed检索观察和试验文章。主要结果是与STROBE或CONSORT方法相关的检查表项目(方法报告得分,MRS)。次要结果包括方法段长度(MSL)与MRS之间的关系。我们还将这些与IM文献进行了比较。MRS和MSL按文章总长度进行比较,清单类型,字段,journal,研究主题,和资金来源。使用单变量和多变量线性回归评估比较。
    我们确定了389篇文章(皮肤病学172篇和IM217篇)。在皮肤病学中,我们确定了83项临床试验和89项观察性研究.平均MRS为61.4%。MSL增加一字对应于MRS增加0.02%(β=0.02,95%CI0.01-0.03)。皮肤病学文献中的平均MRS比IM低12.8%(β=-12.8%,-15.6-[-9.91])平均皮肤病学MSL短345个字(β=-345,-413-[-277])。JAMA皮肤病学的研究,皮肤病学调查杂志,和英国皮肤病学杂志,在政府资助下,有补充方法的平均MRS较高。
    皮肤科的方法报告质量较低。观察到MRS和MSL之间的弱关系。这些数据支持提高研究人员对方法报告的重视,编辑人员,和同行评审员更严格执行检查表报告。
    UNASSIGNED: Adequate methods reporting in observational and trial literature is critical to interpretation and implementation.
    UNASSIGNED: Evaluate methodology reporting adherence in the dermatology literature and compare this to internal medicine (IM) literature.
    UNASSIGNED: We performed a cross-sectional review of randomly-selected dermatology and IM manuscripts published between 2014-2018. Observational and trial articles were retrieved from PubMed. The primary outcome was percent adherence to STROBE or CONSORT methods-related checklist items (methods reporting score, MRS). Secondary outcomes included the relationship between methods section length (MSL) and MRS. We additionally compared these with IM literature. MRS and MSL were compared by overall article length, checklist type, field, journal, study topic, and funding source. Comparisons were assessed using univariable and multivariable linear regression.
    UNASSIGNED: We identified 389 articles (172 dermatology and 217 IM). Within dermatology, we identified 83 clinical trials and 89 observational studies. Mean MRS was 61.4 percent. A one word increase in MSL corresponded to a 0.02 percent increase MRS (β=0.02, 95% CI 0.01-0.03). Mean MRS was 12.8 percent lower in the dermatology literature compared with IM (β=-12.8%, -15.6-[-9.91]). Mean dermatology MSL was 345 words shorter (β=-345, -413-[-277]). Studies from JAMA Dermatology, Journal of Investigative Dermatology, and British Journal of Dermatology, with government funding, and having supplemental methods had higher mean MRS\'s.
    UNASSIGNED: Methods reporting quality was low in dermatology. A weak relationship between MRS and MSL was observed. These data support enhancing researcher emphasis on methods reporting, editorial staff, and peer reviewers that more strictly enforce checklist reporting.
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