Bioengineering

生物工程
  • 文章类型: Editorial
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  • 文章类型: Journal Article
    骨质疏松症是由骨吸收和骨形成之间的不平衡引起的全身性骨骼疾病。目前的治疗主要涉及全身药物和激素治疗。然而,这些系统治疗缺乏方向性,对局部严重的骨质疏松症通常无效。具有复杂不良反应的可能性。因此,使用生物活性材料或外部干预的治疗策略已成为最有前途的方法.这篇综述提出了12个骨质疏松症相关病理变化的微环境治疗目标,包括炎症因子和活性氧(ROS)的局部积累,线粒体动力学失衡,胰岛素抵抗,破坏骨细胞自噬,骨细胞凋亡失衡,神经分泌物的变化,骨细胞的老化,增加局部骨组织血管破坏,减少再生。此外,本文综述了基于这些微环境治疗目标的有效或潜在的生物物理和生化刺激的研究现状,并总结了不同生物工程刺激的优势和最佳参数,以支持骨质疏松症治疗和骨再生的临床前和临床研究。最后,该综述解决了当前的挑战和未来的研究前景。
    Osteoporosis is a systemic skeletal disease caused by an imbalance between bone resorption and formation. Current treatments primarily involve systemic medication and hormone therapy. However, these systemic treatments lack directionality and are often ineffective for locally severe osteoporosis, with the potential for complex adverse reactions. Consequently, treatment strategies using bioactive materials or external interventions have emerged as the most promising approaches. This review proposes twelve microenvironmental treatment targets for osteoporosis-related pathological changes, including local accumulation of inflammatory factors and reactive oxygen species (ROS), imbalance of mitochondrial dynamics, insulin resistance, disruption of bone cell autophagy, imbalance of bone cell apoptosis, changes in neural secretions, aging of bone cells, increased local bone tissue vascular destruction, and decreased regeneration. Additionally, this review examines the current research status of effective or potential biophysical and biochemical stimuli based on these microenvironmental treatment targets and summarizes the advantages and optimal parameters of different bioengineering stimuli to support preclinical and clinical research on osteoporosis treatment and bone regeneration. Finally, the review addresses ongoing challenges and future research prospects.
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  • 文章类型: Journal Article
    长期重建造血干细胞(LT-HSC)用于通过干细胞移植治疗血液疾病。LT-HSC的极低丰度及其在体外培养过程中的快速分化阻碍了其临床应用。以前使用基质饲养层的发展,定义的培养基鸡尾酒,生物工程使HSC在培养中得以扩展,但主要是短期的HSC和祖细胞群,以幼稚的LT-HSC为代价。这里,我们报告了一个生物工程LT-HSC维持生态位的创建,重建生理细胞外基质组织,使用柔软的I型胶原水凝胶驱动血管周围基质细胞(PerSC)中的巢蛋白表达。我们证明了Nestin,由支持HSC的骨髓基质细胞表达,是细胞保护的,通过调节新陈代谢,对于PerSC中HIF-1α的表达是重要的。当将CD34+veHSC添加到包含表达巢蛋白/HIF-1α的PerSC的生物工程生态位中时,LT-HSC数量保持正常克隆和体内重建潜力,没有媒体补充。我们提供了概念证明,我们的生物工程生态位可以支持CRISPR编辑的HSC的存活。LT-HSC离体的成功编辑可以对血液疾病的治疗具有潜在影响。
    Long-term reconstituting haematopoietic stem cells (LT-HSCs) are used to treat blood disorders via stem cell transplantation. The very low abundance of LT-HSCs and their rapid differentiation during in vitro culture hinders their clinical utility. Previous developments using stromal feeder layers, defined media cocktails, and bioengineering have enabled HSC expansion in culture, but of mostly short-term HSCs and progenitor populations at the expense of naive LT-HSCs. Here, we report the creation of a bioengineered LT-HSC maintenance niche that recreates physiological extracellular matrix organisation, using soft collagen type-I hydrogels to drive nestin expression in perivascular stromal cells (PerSCs). We demonstrate that nestin, which is expressed by HSC-supportive bone marrow stromal cells, is cytoprotective and, via regulation of metabolism, is important for HIF-1α expression in PerSCs. When CD34+ve HSCs were added to the bioengineered niches comprising nestin/HIF-1α expressing PerSCs, LT-HSC numbers were maintained with normal clonal and in vivo reconstitution potential, without media supplementation. We provide proof-of-concept that our bioengineered niches can support the survival of CRISPR edited HSCs. Successful editing of LT-HSCs ex vivo can have potential impact on the treatment of blood disorders.
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  • 文章类型: Journal Article
    慢性伤口是一个巨大的全球负担,数百万人患有令人衰弱的并发症。尽管标准护理,由于持续的炎症和受损的组织再生等因素,受损的愈合持续存在。间充质干细胞(MSC)衍生的细胞外囊泡(EV)提供了一种创新的再生医学方法,在工程纳米级递送系统中递送干细胞衍生的治疗货物。这篇综述探讨了开创性的生物工程策略,以将MSC-EV设计成用于慢性伤口的精密纳米疗法。CRISPR基因编辑等新兴技术,微流体制造,仿生递送系统因其增强MSC-EV靶向的潜力而被强调,优化治疗性货物富集,并确保一致的临床级生产。然而,关键的障碍仍然存在,包括批次可变性,对潜在致瘤性进行严格的安全性评估,免疫原性,和生物分布分析。至关重要的是,协调监管科学与生物工程和患者倡导的协作框架是加快全球临床翻译的关键。通过克服这些挑战,工程MSC-EV可以催化现成的再生疗法的新时代,为数百万受无法愈合的伤口折磨的人恢复希望和愈合。
    Chronic wounds represent a significant global burden, afflicting millions with debilitating complications. Despite standard care, impaired healing persists due to factors like persistent inflammation and impaired tissue regeneration. Mesenchymal stem cell (MSC)-derived extracellular vesicles (EVs) offer an innovative regenerative medicine approach, delivering stem cell-derived therapeutic cargo in engineered nanoscale delivery systems. This review examines pioneering bioengineering strategies to engineer MSC-EVs into precision nanotherapeutics for chronic wounds. Emerging technologies like CRISPR gene editing, microfluidic manufacturing, and biomimetic delivery systems are highlighted for their potential to enhance MSC-EV targeting, optimize therapeutic cargo enrichment, and ensure consistent clinical-grade production. However, key hurdles remain, including batch variability, rigorous safety assessment for potential tumorigenicity, immunogenicity, and biodistribution profiling. Crucially, collaborative frameworks harmonizing regulatory science with bioengineering and patient advocacy hold the key to expediting global clinical translation. By overcoming these challenges, engineered MSC-EVs could catalyze a new era of off-the-shelf regenerative therapies, restoring hope and healing for millions afflicted by non-healing wounds.
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  • 文章类型: Journal Article
    海湾战争疾病(GWI)的特征是广泛的症状,主要表现为胃肠道症状。在这些胃肠道症状中,运动障碍非常普遍,表现为慢性便秘,胃痛,消化不良,腹泻,以及其他严重影响GWI退伍军人生活质量的疾病。然而,尽管这些退伍军人中胃肠道损伤的患病率很高,大多数研究注意力都集中在神经系统疾病上。这一观点提供了当前体内研究进展的全面概述,阐明了GWI中胃肠道疾病的潜在机制。一般来说,这些体内和体外模型表明,神经炎症改变肠道运动,并驱动GWI中报道的胃肠道症状。此外,这种观点突出了体外生物工程模型的潜力和挑战,这可能是理解和治疗胃肠道相关GWI病理的关键因素。
    Gulf War Illness (GWI) is characterized by a wide range of symptoms that manifests largely as gastrointestinal symptoms. Among these gastrointestinal symptoms, motility disorders are highly prevalent, presenting as chronic constipation, stomach pain, indigestion, diarrhea, and other conditions that severely impact the quality of life of GWI veterans. However, despite a high prevalence of gastrointestinal impairments among these veterans, most research attention has focused on neurological disturbances. This perspective provides a comprehensive overview of current in vivo research advancements elucidating the underlying mechanisms contributing to gastrointestinal disorders in GWI. Generally, these in vivo and in vitro models propose that neuroinflammation alters gut motility and drives the gastrointestinal symptoms reported in GWI. Additionally, this perspective highlights the potential and challenges of in vitro bioengineering models, which could be a crucial contributor to understanding and treating the pathology of gastrointestinal related-GWI.
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  • 文章类型: Journal Article
    在时空组织的背景下理解组织微环境(TiME)的分子和物理复杂性仍然是一个持久的挑战。工程和数据科学的最新进展现在有望研究结构,功能,和TiME的动态以前所未有的细节;然而,许多进步仍然发生在筒仓中,这些筒仓很少整合信息来研究TiME的全部细节。这篇综述提供了化学基础工程原理的综合概述,光学,电气,机械,和计算科学来探索,感觉,模型,制造TiME。在个别章节中,我们首先总结了基本原理,能力,以及新兴技术的范围,每种技术和最近的突破性发现,有前途的创新。我们提供了这些进步在回答有关TiME及其在各种疾病和发育过程中的作用的关键问题方面的潜力的观点。最后,我们提出了一种综合观点,赞赏TiME研究中的主要科学和教育方面。
    Understanding the molecular and physical complexity of the tissue microenvironment (TiME) in the context of its spatiotemporal organization has remained an enduring challenge. Recent advances in engineering and data science are now promising the ability to study the structure, functions, and dynamics of the TiME in unprecedented detail; however, many advances still occur in silos that rarely integrate information to study the TiME in its full detail. This review provides an integrative overview of the engineering principles underlying chemical, optical, electrical, mechanical, and computational science to probe, sense, model, and fabricate the TiME. In individual sections, we first summarize the underlying principles, capabilities, and scope of emerging technologies, the breakthrough discoveries enabled by each technology and recent, promising innovations. We provide perspectives on the potential of these advances in answering critical questions about the TiME and its role in various disease and developmental processes. Finally, we present an integrative view that appreciates the major scientific and educational aspects in the study of the TiME.
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  • 文章类型: Journal Article
    细胞外囊泡(EV)在多种生物过程中发挥关键作用,在细胞之间运输生物分子,并已被设计用于治疗应用。一种有用的EV生物工程策略是在EV表面表达工程蛋白以赋予靶向,生物活性和其他性质。测量混合如何在电动汽车群体中变化对于表征此类材料并理解其功能非常重要。然而,定量表征以单EV分辨率掺入的工程蛋白质的绝对数量仍然具有挑战性。为了满足这些需求,我们开发了一个基于HaloTag的表征平台,其中染料或其他合成物种可以共价和化学计量地连接到EV表面上的工程蛋白质。为了评估这个系统,我们采用了几种正交量化方法,包括流式细胞术和荧光显微镜,并发现HaloTag介导的定量在EV分析方法中通常是稳健的。我们使用单囊泡流式细胞术将HaloTag标记与EV的抗体标记进行了比较,使我们能够测量抗体标记可以低估EV上存在的蛋白质的很大程度。最后,我们展示了使用HaloTag来比较EV生物工程的蛋白质设计。总的来说,HaloTag系统是一种有用的EV表征工具,它补充和扩展了现有方法。
    Extracellular vesicles (EVs) play key roles in diverse biological processes, transport biomolecules between cells and have been engineered for therapeutic applications. A useful EV bioengineering strategy is to express engineered proteins on the EV surface to confer targeting, bioactivity and other properties. Measuring how incorporation varies across a population of EVs is important for characterising such materials and understanding their function, yet it remains challenging to quantitatively characterise the absolute number of engineered proteins incorporated at single-EV resolution. To address these needs, we developed a HaloTag-based characterisation platform in which dyes or other synthetic species can be covalently and stoichiometrically attached to engineered proteins on the EV surface. To evaluate this system, we employed several orthogonal quantification methods, including flow cytometry and fluorescence microscopy, and found that HaloTag-mediated quantification is generally robust across EV analysis methods. We compared HaloTag-labelling to antibody-labelling of EVs using single vesicle flow cytometry, enabling us to measure the substantial degree to which antibody labelling can underestimate proteins present on an EV. Finally, we demonstrate the use of HaloTag to compare between protein designs for EV bioengineering. Overall, the HaloTag system is a useful EV characterisation tool which complements and expands existing methods.
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  • 文章类型: Journal Article
    从牙锥束计算机断层扫描(CBCT)精确分割牙源性囊性病变(OCL)对于有效的牙科诊断至关重要。尽管监督学习方法在分割各种疾病方面已经显示出实际的诊断结果,它们分割涵盖不同亚类品种的OCL的能力尚未得到广泛研究。
    在这项研究中,我们提出了一种新的监督学习方法,称为OCL-Net,它结合了多尺度U-Net模型,以及经过联合监督损失训练的自动适应机制。回顾性收集了一家医院的匿名CBCT图像。为了评估我们的模型提高颌面外科医生诊断效率的能力,我们进行了一项诊断评估,包括7名临床医生在有或没有自动分段面罩辅助的情况下进行诊断.
    我们收集了300张匿名CBCT图像,这些图像被手动注释以用于分割掩模。大量实验证明了我们的OCL-Net对CBCTOCL分割的有效性,实现88.84%的整体骰子得分,IoU得分为81.23%,AUC评分为92.37%。通过我们的诊断评估,我们发现,当临床医生得到来自OCL-Net的分割标签的辅助时,他们的平均诊断准确率从53.21%提高到55.71%,而平均花费时间从101s显著减少到47s(P<0.05)。
    这些发现证明了我们的方法作为CBCT图像中OCL的鲁棒自动分割系统的潜力,而分段面罩可用于进一步提高OCLs牙科诊断效率。
    UNASSIGNED: Precise segmentation of Odontogenic Cystic Lesions (OCLs) from dental Cone-Beam Computed Tomography (CBCT) is critical for effective dental diagnosis. Although supervised learning methods have shown practical diagnostic results in segmenting various diseases, their ability to segment OCLs covering different sub-class varieties has not been extensively investigated.
    UNASSIGNED: In this study, we propose a new supervised learning method termed OCL-Net that combines a Multi-Scaled U-Net model, along with an Auto-Adapting mechanism trained with a combined supervised loss. Anonymous CBCT images were collected retrospectively from one hospital. To assess the ability of our model to improve the diagnostic efficiency of maxillofacial surgeons, we conducted a diagnostic assessment where 7 clinicians were included to perform the diagnostic process with and without the assistance of auto-segmentation masks.
    UNASSIGNED: We collected 300 anonymous CBCT images which were manually annotated for segmentation masks. Extensive experiments demonstrate the effectiveness of our OCL-Net for CBCT OCLs segmentation, achieving an overall Dice score of 88.84%, an IoU score of 81.23%, and an AUC score of 92.37%. Through our diagnostic assessment, we found that when clinicians were assisted with segmentation labels from OCL-Net, their average diagnostic accuracy increased from 53.21% to 55.71%, while the average time spent significantly decreased from 101s to 47s (P<0.05).
    UNASSIGNED: The findings demonstrate the potential of our approach as a robust auto-segmentation system on OCLs in CBCT images, while the segmented masks can be used to further improve OCLs dental diagnostic efficiency.
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  • 文章类型: Journal Article
    艰难梭菌的孢子形式的快速检测仍然是临床医生的挑战。为了解决这个问题,我们开发了一部小说,精确,通过定制的微波裂解平台,从艰难梭菌孢子中几乎自发释放DNA的微波增强方法。艰难梭菌孢子在2.45GHz的脉冲微波电场中微波辐照5s,以裂解每个样品中的孢子和细菌,然后将其添加到丝网印刷电极和电化学DNA生物传感器测定系统中,以鉴定病原体的两个毒素基因的存在。微波裂解方法以0.02μg/mL至250μg/mL之间的可定量浓度从细菌释放单链和双链基因组DNA,允许随后在生物传感器中进行下游检测。电化学台式系统包含对艰难梭菌的tcdA和tcdB毒素基因内的保守区域具有特异性的寡核苷酸探针,并且能够在10分钟内检测300µL未加工的人类粪便样品中的800个艰难梭菌孢子。这些结果证明了使用固态发电的可行性,脉冲微波电场从感染艰难梭菌孢子的人粪便中裂解和释放DNA。这种快速微波裂解方法在开发艰难梭菌的快速即时生物传感器平台中提高了随后的电化学检测的速度。
    The rapid detection of the spore form of Clostridioides difficile has remained a challenge for clinicians. To address this, we have developed a novel, precise, microwave-enhanced approach for near-spontaneous release of DNA from C. difficile spores via a bespoke microwave lysis platform. C. difficile spores were microwave-irradiated for 5 s in a pulsed microwave electric field at 2.45 GHz to lyse the spore and bacteria in each sample, which was then added to a screen-printed electrode and electrochemical DNA biosensor assay system to identify presence of the pathogen\'s two toxin genes. The microwave lysis method released both single-stranded and double-stranded genome DNA from the bacterium at quantifiable concentrations between 0.02 μg/mL to 250 μg/mL allowing for subsequent downstream detection in the biosensor. The electrochemical bench-top system comprises of oligonucleotide probes specific to conserved regions within tcdA and tcdB toxin genes of C. difficile and was able to detect 800 spores of C. difficile within 300 µL of unprocessed human stool samples in under 10 min. These results demonstrate the feasibility of using a solid-state power generated, pulsed microwave electric field to lyse and release DNA from human stool infected with C. difficile spores. This rapid microwave lysis method enhanced the rapidity of subsequent electrochemical detection in the development of a rapid point-of-care biosensor platform for C. difficile.
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  • 文章类型: Journal Article
    生物物理因素在人类胚胎发育中起着重要作用。传统的器官发生体外模型侧重于生化环境,没有考虑机械力对发育组织的影响。虽然大多数人体组织的杨氏模量在低千帕范围内,标准细胞培养基质,经等离子体处理的聚苯乙烯,杨氏模量为3吉帕斯卡,使它比天然组织硬10,000-100,000倍。现代体外方法试图概括天然器官的生物物理生态位,并产生了更多临床相关的人体组织模型。自从Clevers\'2009年肠道类器官概念以来,该领域迅速扩展,产生干细胞衍生结构,转录上类似于胎儿组织,人体几乎每个器官系统。出于这个原因,我们推测,类器官将在胎儿再生医学中产生首次临床影响,因为离体产生的结构将更好地匹配天然胎儿组织。此外,自体来源的移植组织将能够与发育中的胚胎一起动态地生长,胎儿环境.随着类器官技术的发展,由此产生的组织将接近成人器官的结构和功能,并可能有助于弥合临床前候选药物和临床批准的治疗药物之间的差距。在这次审查中,我们讨论了组织硬度的作用,粘弹性,器官形成和疾病发展中的剪切力,建议将这些物理参数进一步整合到类器官模型中,以改善其生理相关性和治疗适用性。它还指出,机械传导性Hippo-YAP/TAZ信号通路是细胞外基质硬度之间相互作用的关键参与者,细胞力学,和生化途径。最后,我们强调了物理学的前沿如何应用于生物学,例如,如何应用量子纠缠来更好地预测自发的DNA突变。在未来,可以利用当代物理理论来更好地理解器官发生过程中看似随机的事件。
    Biophysical factors play a fundamental role in human embryonic development. Traditional in vitro models of organogenesis focused on the biochemical environment and did not consider the effects of mechanical forces on developing tissue. While most human tissue has a Young\'s modulus in the low kilopascal range, the standard cell culture substrate, plasma-treated polystyrene, has a Young\'s modulus of 3 gigapascals, making it 10,000-100,000 times stiffer than native tissues. Modern in vitro approaches attempt to recapitulate the biophysical niche of native organs and have yielded more clinically relevant models of human tissues. Since Clevers\' conception of intestinal organoids in 2009, the field has expanded rapidly, generating stem-cell derived structures, which are transcriptionally similar to fetal tissues, for nearly every organ system in the human body. For this reason, we conjecture that organoids will make their first clinical impact in fetal regenerative medicine as the structures generated ex vivo will better match native fetal tissues. Moreover, autologously sourced transplanted tissues would be able to grow with the developing embryo in a dynamic, fetal environment. As organoid technologies evolve, the resultant tissues will approach the structure and function of adult human organs and may help bridge the gap between preclinical drug candidates and clinically approved therapeutics. In this review, we discuss roles of tissue stiffness, viscoelasticity, and shear forces in organ formation and disease development, suggesting that these physical parameters should be further integrated into organoid models to improve their physiological relevance and therapeutic applicability. It also points to the mechanotransductive Hippo-YAP/TAZ signaling pathway as a key player in the interplay between extracellular matrix stiffness, cellular mechanics, and biochemical pathways. We conclude by highlighting how frontiers in physics can be applied to biology, for example, how quantum entanglement may be applied to better predict spontaneous DNA mutations. In the future, contemporary physical theories may be leveraged to better understand seemingly stochastic events during organogenesis.
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