phenotypic plasticity

表型可塑性
  • 文章类型: Journal Article
    目的:Wnt诱导信号蛋白1(WISP1)和Dickkopf-1(DKK1)在食管鳞状细胞癌(ESCC)中高表达,但他们之间没有直接联系.表型可塑性是ESCC的标志。本研究旨在确定WISP1和DKK1之间的关联及其在ESCC表型可塑性中的作用。
    方法:在GEO数据库中分析了食管癌中差异表达的基因,随后分析GO和KEGG富集以筛选hub基因。在ESCC组织和细胞中评估WISP1表达和DKK1分泌。通过将ESCC细胞注射到裸鼠中,建立了肿瘤异种移植和体内转移模型。进行了功能缺陷和抢救实验,然后进行细胞增殖试验,迁移/入侵,stemness,上皮-间质转化(EMT),和细胞凋亡,以及肿瘤体积,体重,扩散,stemness,和肺转移。确定了WISP1和DKK1的结合关系和共表达。
    结果:在ESCC细胞和组织中WISP1和DKK1上调,和WISP1富集在细胞干性和Wnt途径中。WISP1敲低抑制增殖,迁移/入侵,EMT活动,和干性,但增强了ESCC细胞的凋亡。WISP1敲除抑制了ESCC的生长,扩散,stemness,和体内转移。在ESCC中WISP1与DKK1结合。DKK1过表达消除了WISP1敲低对体外ESCC细胞和体内ESCC肿瘤恶性行为的抑制作用。
    结论:敲除WISP1/DKK1通过抑制上皮-间质转化和干性来抑制食管鳞状细胞癌的表型可塑性。
    OBJECTIVE: Wnt-induced signaling protein 1 (WISP1) and Dickkopf-1 (DKK1) are highly expressed in esophageal squamous cell carcinoma (ESCC), but no direct connection was identified between them. Phenotypic plasticity is a hallmark of ESCC. This research intended to identify the association between WISP1 and DKK1 and their roles in the phenotypic plasticity of ESCC.
    METHODS: Genes differentially expressed in esophageal carcinoma were analyzed in the GEO database, followed by analyses of GO and KEGG enrichment to screen the hub gene. WISP1 expression and DKK1 secretion was assessed in ESCC tissues and cells. The tumor xenograft and in vivo metastasis models were established by injecting ESCC cells into nude mice. Functional deficiency and rescue experiments were conducted, followed by assays for cell proliferation, migration/invasion, stemness, epithelial-mesenchymal transition (EMT), and apoptosis, as well as tumor volume, weight, proliferation, stemness, and lung metastasis. The binding relationship and co-expression of WISP1 and DKK1 were determined.
    RESULTS: WISP1 and DKK1 were upregulated in ESCC cells and tissues, and WISP1 was enriched in the cell stemness and Wnt pathways. WISP1 knockdown subdued proliferation, migration/invasion, EMT activity, and stemness but enhanced apoptosis in ESCC cells. WISP1 knockdown restrained ESCC growth, proliferation, stemness, and metastasis in vivo. WISP1 bound to DKK1 in ESCC. DKK1 overexpression abolished the repressive impacts of WISP1 knockdown on the malignant behaviors of ESCC cells in vitro and of ESCC tumor in vivo.
    CONCLUSIONS: Knockdown of WISP1/DKK1 restrains the phenotypic plasticity in esophageal squamous cell carcinoma by suppressing epithelial-mesenchymal transition and stemness.
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  • 文章类型: Journal Article
    耐药性是对抗癌症的最大挑战之一。特别是,在胶质母细胞瘤的情况下,最致命的脑瘤,对替莫唑胺(该肿瘤化疗的标准护理药物)的耐药性是治疗失败的主要原因之一,因此是诊断为该疾病的患者预后不良的原因。在这项工作中,我们将治疗的胶质母细胞瘤球体的三维体外实验与肿瘤进化和适应的数学模型相结合。我们使用一种基于内部变量的新方法来模拟对替莫唑胺的抗性的获取,该方法在一组治疗过的球体的实验中观察到。这些内部变量描述了细胞的表型状态,这取决于药物暴露的历史并影响细胞行为。我们使用模型选择来确定最简约的模型,并对其进行校准以重现实验数据,在体外结果和计算机结果之间获得高水平的一致性。进行敏感性分析以研究预测中每个模型参数的影响。更重要的是,我们展示了该模型如何用于回答生物学问题,比如什么是内在适应机制,或用于分离敏感和抗性种群。我们得出的结论是,拟议的计算机框架,结合实验,可能有助于提高我们对胶质母细胞瘤耐药机制的理解,并最终为设计新的治疗方案制定一些指导方针。
    Drug resistance is one of the biggest challenges in the fight against cancer. In particular, in the case of glioblastoma, the most lethal brain tumour, resistance to temozolomide (the standard of care drug for chemotherapy in this tumour) is one of the main reasons behind treatment failure and hence responsible for the poor prognosis of patients diagnosed with this disease. In this work, we combine the power of three-dimensional in vitro experiments of treated glioblastoma spheroids with mathematical models of tumour evolution and adaptation. We use a novel approach based on internal variables for modelling the acquisition of resistance to temozolomide that was observed in experiments for a group of treated spheroids. These internal variables describe the cell\'s phenotypic state, which depends on the history of drug exposure and affects cell behaviour. We use model selection to determine the most parsimonious model and calibrate it to reproduce the experimental data, obtaining a high level of agreement between the in vitro and in silico outcomes. A sensitivity analysis is carried out to investigate the impact of each model parameter in the predictions. More importantly, we show how the model is useful for answering biological questions, such as what is the intrinsic adaptation mechanism, or for separating the sensitive and resistant populations. We conclude that the proposed in silico framework, in combination with experiments, can be useful to improve our understanding of the mechanisms behind drug resistance in glioblastoma and to eventually set some guidelines for the design of new treatment schemes.
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  • 文章类型: Journal Article
    异叶是一种现象,其中单个植物响应于周围环境而急剧改变叶片形状。双歧杆菌(刺科;水紫藤),由于其响应各种环境因素而引起的明显的叶形变化,最近已成为研究异叶树的模型植物。当被淹没时,H.difformis经常发育复杂的叶子,但是在陆地上它发展出简单的叶子。叶的复杂性还受到其他因素的影响,比如光密度,湿度,湿度和温度。这里,我们对H.difformis染色体水平基因组进行了测序和组装(支架N50:60.43Mb,基因组大小:871.92Mb),这揭示了36099个预测的蛋白质编码基因分布在15个假染色体上。H.difformis在渐新世气候变化期间与其亲属不同,并扩大了与其两栖习性相关的基因家族。与环境刺激相关的基因,叶片发育,和其他途径在水下和陆地条件下差异表达,可能会调节形态和生理适应不断变化的环境。我们还发现生长素在异叶双歧杆菌中起作用。最后,我们发现了对不同环境条件有反应的候选基因,并阐明了LateMERISTEMIDENTY1(LMI1)在异源植物中的作用。我们建立了H.difformis作为研究环境适应与形态发生之间相互关系的模型。
    Heterophylly is a phenomenon whereby an individual plant dramatically changes leaf shape in response to the surroundings. Hygrophila difformis (Acanthaceae; water wisteria), has recently emerged as a model plant to study heterophylly because of its striking leaf shape variation in response to various environmental factors. When submerged, H. difformis often develops complex leaves, but on land it develops simple leaves. Leaf complexity is also influenced by other factors, such as light density, humidity, and temperature. Here, we sequenced and assembled the H. difformis chromosome-level genome (scaffold N50: 60.43 Mb, genome size: 871.92 Mb), which revealed 36 099 predicted protein-coding genes distributed over 15 pseudochromosomes. H. difformis diverged from its relatives during the Oligocene climate-change period and expanded gene families related to its amphibious habit. Genes related to environmental stimuli, leaf development, and other pathways were differentially expressed in submerged and terrestrial conditions, possibly modulating morphological and physiological acclimation to changing environments. We also found that auxin plays a role in H. difformis heterophylly. Finally, we discovered candidate genes that respond to different environmental conditions and elucidated the role of LATE MERISTEM IDENTITY 1 (LMI1) in heterophylly. We established H. difformis as a model for studying interconnections between environmental adaptation and morphogenesis.
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  • 文章类型: Journal Article
    植物的生活史可以在时空上响应气候的变化而进化,但是许多多物种研究忽略了特定物种(尤其是基础物种)的生态影响和遗传基础。为了一个物种成功入侵一个地区,可能会成为基础物种,入侵植物的生活史变化对入侵生态系统产生了相当大的生态和进化影响。我们研究了一种入侵的基础植物,互花米草,使用普通的花园实验,其生活史沿着纬度梯度变化。两个常见的花园位于热带地区的范围边界和中国温带地区互花米草的主要分布区。在每个人口/花园中,我们测量了构成生殖阶段和适应性特征的三个连续物候阶段的开始时间。在温度较高的低纬度花园中,我们发现与高纬度花园相比,生殖阶段提前,其长度延长。这可能是由于成熟时间的可塑性较低。此外,在低纬度花园中,生殖期长度的可塑性与适应性呈正相关。热带边缘人口的可塑性和适应性最低,应对不断变化的环境的能力不足可能会导致人口减少。这些结果反映了互花米草在中国生活史上的遗传差异。我们的研究提供了一种新颖的观点,通过整合植物的生活史来检验中心-外围假设,并强调了考虑进化的重要性。这些见解可以帮助我们了解生活史变化的长期生态后果,对植物健康有影响,物种相互作用,和气候变化下的生态系统功能。
    Plant\'s life history can evolve in response to variation in climate spatio-temporally, but numerous multiple-species studies overlook species-specific (especially a foundation species) ecological effects and genetic underpinnings. For a species to successfully invade a region, likely to become a foundation species, life-history variation of invasive plants exerts considerable ecological and evolutionary impacts on invaded ecosystems. We examined how an invasive foundation plant, Spartina alterniflora, varied in its life history along latitudinal gradient using a common gardens experiment. Two common gardens were located at range boundary in tropical zone and main distribution area of S. alterniflora in temperate zone in China. Within each population/garden, we measured the onset time of three successive phenological stages constituting the reproductive phase and a fitness trait. In the low-latitude garden with higher temperature, we found that reproductive phase was advanced and its length prolonged compared to the high-latitude garden. This could possibly due to lower plasticity of maturity time. Additionally, plasticity in the length of the reproductive phase positively related with fitness in the low-latitude garden. Marginal population from tropic had the lowest plasticity and fitness, and the poor capacity to cope with changing environment may result in reduction of this population. These results reflected genetic divergence in life history of S. alterniflora in China. Our study provided a novel view to test the center-periphery hypothesis by integration across a plant\'s life history and highlighted the significance in considering evolution. Such insights can help us to understand long-term ecological consequences of life-history variation, with implications for plant fitness, species interaction, and ecosystem functions under climate change.
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  • 文章类型: Journal Article
    水蚤可以通过感知鱼类的airomones来避免捕食,并通过改变表型来产生诱导型防御。在这项研究中,结果表明,暴露于Aristichthysnobiliskairomones的两种水蚤(Daphniapulex和Daphniasinensis)的形态和生活史策略。在鱼的情况下,两种水蚤在成熟时表现出明显较小的体长,10龄的后代体长较小,后代的相对尾脊更长。然而,两种水蚤的其他形态和生活史特征不同。D.pulex在暴露于鱼类airomones后显示出明显更长的相对尾巴脊柱长度和更早的成熟年龄。暴露于鱼中的D.sinensis的后代总数明显高于对照组,而D.pulex则明显较低。这些结果表明,这两种水蚤具有不同的诱导型防御策略(例如,形态和生活史特征)在长时间暴露于A.nobiliskairomones期间,和他们的后代也发展形态防御,以避免捕食。这将为进一步探索浮游鱼类对水蚤形态和生活史性状的适应性进化提供参考。
    Daphnia can avoid predation by sensing fish kairomones and producing inducible defenses by altering the phenotype. In this study, the results showed that the morphological and life-history strategies of two Daphnia species (Daphnia pulex and Daphnia sinensis) exposed to Aristichthys nobilis kairomones. In the presence of fish kairomones, the two Daphnia species exhibited significantly smaller body length at maturity, smaller body length of offspring at the 10th instar, and longer relative tail spine of offspring. Nevertheless, other morphological and life-history traits of the two Daphnia species differed. D. pulex showed a significantly longer relative tail spine length and earlier age at maturity after exposure to fish kairomones. The total offspring number of D. sinensis exposed to fish kairomones was significantly higher than that of the control group, whereas that of D. pulex was significantly lower. These results suggest that the two Daphnia species have different inducible defense strategies (e.g., morphological and life-history traits) during prolonged exposure to A. nobilis kairomones, and their offspring also develop morphological defenses to avoid predation. It will provide reference for further exploring the adaptive evolution of Daphnia morphology and life-history traits in the presence of planktivorous fish.
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  • 文章类型: Journal Article
    表型可塑性和进化适应是允许种群应对环境变化的两种主要方式,但是它们之间的潜在关系仍然存在争议。使用适应青藏高原和邻近低地的牛的相互移植方法,我们旨在研究自然条件下进化过程和表型可塑性在驱动表型和转录组变化方面的相对贡献。我们观察到,尽管在对高原环境的正向适应过程中,许多遗传转录组变化是明显的,当将藏牛重新引入低地栖息地时,塑性变化主要促进转录组转化为首选状态。具有祖先可塑性的基因通常通过进化适应被逆转,并且在进化的藏牛中显示出与祖先阶段更接近的表达水平。在表型水平上也观察到类似的趋势,大多数生化和血液流变学表型显示出恢复其祖先模式的趋势,表明祖先表达水平的恢复是适应过程中广泛的进化趋势。我们的研究结果有助于有关可塑性和遗传变化在哺乳动物环境适应中的相对贡献的辩论。此外,我们强调,祖先表型的恢复代表了牛新环境适应的一般模式。
    Phenotype plasticity and evolution adaptations are the two main ways in which allow populations to deal with environmental changes, but the potential relationship between them remains controversial. Using a reciprocal transplant approach with cattle adapted to the Tibetan Plateau and adjacent lowlands, we aim to investigate the relative contributions of evolutionary processes and phenotypic plasticity in driving both phenotypic and transcriptomic changes under natural conditions. We observed that while numerous genetic transcriptomic changes were evident during the forward adaptation to highland environments, plastic changes predominantly facilitate the transformation of transcriptomes into a preferred state when Tibetan cattle are reintroduced to lowland habitats. Genes with ancestral plasticity are generally reversed by evolutionary adaptations and show a closer expression level to the ancestral stage in evolved Tibetan cattle. A similar trend was also observed at the phenotypes level, with a majority of biochemical and hemorheology phenotypes showing a tendency to revert to their ancestral patterns, suggesting the restoration of ancestral expression levels is a widespread evolutionary trend during adaptation. The findings of our study contribute to the debate regarding the relative contributions of plasticity and genetic changes in mammal environment adaptation. Furthermore, we highlight that the restoration of ancestral phenotypes represents a general pattern in cattle new environment adaptation.
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  • 文章类型: Journal Article
    社会性环境以其通过调节生物体的生殖输出对生物体生存的影响而闻名。然而,在没有身体接触的情况下,它是否通过各种线索间接影响生存,以及它相对于直接相互作用的影响仍在很大程度上未知。在这项研究中,我们调查了社会-性环境对螨虫的生存和繁殖的间接和直接影响(Acari:Acaridae)。结果表明,同种提示对螨虫的存活没有明显影响,但是交配的雌性螨虫的生存和繁殖发生了显著的变化,雌性与雄性交配的寿命明显缩短,寿命增加。对于男性来说,不同治疗组的生存率和寿命没有显著差异.这些发现表明,与异性的直接相互作用比间接相互作用对螨虫的影响要深远得多,并强调迫切需要扩大研究同种线索如何调节具有更多物种的生物的性能,以阐明其对分类群的影响。
    The social-sexual environment is well known for its influence on the survival of organisms by modulating their reproductive output. However, whether it affects survival indirectly through a variety of cues without physical contact and its influence relative to direct interaction remain largely unknown. In this study, we investigated both the indirect and direct influences of the social-sexual environment on the survival and reproduction of the mite Tyrophagus curvipenis (Acari: Acaridae). The results demonstrated no apparent influence of conspecific cues on the survival of mites, but the survival and reproduction of mated female mites significantly changed, with the females mated with males having a significantly shortened lifespan and increased lifetime fecundity. For males, no significant difference was observed across treatments in their survival and lifespan. These findings indicate that direct interaction with the opposite sex has a much more profound influence on mites than indirect interaction and highlight the urgent need to expand research on how conspecific cues modulate the performance of organisms with more species to clarify their impacts across taxa.
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  • 文章类型: Journal Article
    水中钙(Ca)的下降正在威胁着全球的淡水生态系统。人们非常担心Ca限制与捕食等生物压力相结合可能产生的生态后果。在这里,我们研究了钙限制和鱼类捕食风险之间的相互作用对主要食草动物水蚤的表型可塑性,以及可塑性特征变化的生理反应。鱼类捕食风险导致D.pulex更早成熟,并在足够的Ca下产生更多但更小的后代。Ca的下降抑制了防御性状的表达,抑制作用表现为线性或阈值极限动态。捕食风险的存在减轻了Ca下降对减小体型的负面影响,但加剧了成熟的延迟。表明生命史权衡更大的体型,而不是多压力水蚤的当前繁殖。肌动蛋白3介导的细胞骨架和AMPKβ介导的能量代谢与这些可塑性性状变化高度相关。预计浮游动物的表型可塑性改变将引发许多生态影响,从个体适应性到群落结构,从而为钙减少影响湖泊生态系统的机制提供了新的见解。
    Aqueous calcium (Ca) decline is threatening freshwater ecosystems worldwide. There are great concerns about the possible ecological consequences of Ca limitation combined with biological pressures like predation. Here we investigated the interactions between Ca restriction and fish predation risk on the phenotypic plasticity in the keystone herbivore Daphnia, together with physiological responses underlying the plastic trait changes. Fish predation risk induced D. pulex to mature earlier and produce more but smaller offspring at adequate Ca. Declining Ca inhibited the expression of defensive traits, with the inhibitive degree showing a linear or threshold-limited dynamic. The presence of predation risk mitigated the negative effect of declining Ca on reducing body size but exacerbated the delay in maturity, indicating a life history trade-off for larger body size rather than the current reproduction in multi-stressed Daphnia. Actin 3-mediated cytoskeleton and AMPK β-mediated energy metabolism were highly correlated with these plastic trait changes. Altered phenotypic plasticity in planktonic animals is expected to trigger many ecological impacts from individual fitness to community structure, thus providing new insights into the mechanisms underlying decreased Ca affecting lake ecosystems.
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  • 文章类型: Journal Article
    捕食者依靠捕获猎物来满足其能量和营养需求,这给猎物带来了捕食的风险。捕食风险分为消耗性和非消耗性。非消耗性影响可能通过猎物物种的生长和个体发育轨迹改变而表现出来,由捕食者的嗅觉或其他感官线索动态调制。dorsalisHendel是全球园艺的主要入侵威胁。虽然早期的研究主要集中在dorsalis和它的天敌之间的消费相互作用,人们忽视了非消费性互动对背芽孢杆菌发展的潜在影响。在这项研究中,我们调查了捕食风险效应的影响,由视觉暴露于掠食性MantisHierodulapatelliferaServille及其相关气味引起,背芽孢杆菌的生活史特征。在笼子里的捕食者存在的情况下,雌性背B.dorsalis的发育时间缩短(H.patellifera)或捕食者气味,但繁殖力显著增加。相反,男性的发育时间没有显着变化。此外,笼中捕食者或捕食者气味的捕食风险对女性和男性死亡时的体重都没有显着影响。本研究调查了捕食风险对背芽孢杆菌发育和繁殖的影响,强调气味风险在生物和害虫控制中的潜在重要性。
    Predators are dependent on the capture of prey to meet their energetic and nutritive requirements, which brings the risk of predation to prey. The predation risk is divided into consumptive and non-consumptive effects. Non-consumptive effects may manifest through altered growth and ontogenetic trajectories in prey species, a dynamic modulated by olfactory or other sensory cues from predators. Bactrocera dorsalis Hendel represents a major invasive threat to global horticulture. While earlier research was primarily centered on the consumptive interactions between B. dorsalis and its natural enemies, the potential consequences of non-consumptive interactions on the development of B. dorsalis have been overlooked. In this study, we investigated the impact of predation risk effects, induced by both visual exposure to the predatory mantis Hierodula patellifera Serville and its associated odor, on the life history traits of B. dorsalis. Female B. dorsalis demonstrated a reduced developmental time in the presence of a caged predator (H. patellifera) or predator odors, but showed significantly increased fecundity. Conversely, males displayed no significant change in developmental time. Additionally, neither the female nor male body weight at death was significantly influenced by the predation risk from the caged predator or predator odors. This study investigated the effects of predation risk on the development and reproduction of B. dorsalis, emphasizing the potential importance of odor risk in biological and pest control.
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  • 文章类型: Journal Article
    了解植物的光适应对保护至关重要。鸭嘴兽阿古塔,一种东亚特有的濒危落叶灌木,具有较高的观赏价值和系统地理价值。然而,软枣属植物弱的环境适应性限制了其一般生长和保护。为了更深入地了解软枣的生长条件,我们通过暴露于不同自然光强度(全光,40%,和10%)。结果表明,与其他强度相比,10%光强下的软枣幼苗的叶片形态特征和比叶面积显着改善。净光合速率,叶绿素(Chl)含量,光合氮利用效率(PNUE),和光合磷利用效率(PPUE)在10%的光强度与40%的光强度和全光强度相比显着增加,而光补偿点和暗呼吸水平在10%光照条件下达到最低值。随着光线的减少,叶片厚度,栅栏组织,海绵状组织,气孔密度显著下降,而气孔长度,气孔宽度,气孔孔径显著升高。当暴露于10%的光强度时,叶绿体的超微结构发育良好,叶绿体和淀粉粒度,Grana的数量,类囊体都显著增加,而质体的数量显着减少。相对距离表型可塑性指数分析显示,软枣主要通过调整PPUE来适应不同的光环境,Chlb,PNUE,叶绿体面积,和PSII反应中心的活性。我们提出软枣有效地利用弱光通过调节其叶片结构来重新配置其能量代谢,光合能力,养分利用效率,和叶绿体发育。
    Understanding the light adaptation of plants is critical for conservation. Platycrater arguta, an endangered deciduous shrub endemic to East Asia, possesses high ornamental and phylogeographic value. However, the weak environmental adaptability of P. arguta species has limited its general growth and conservation. To obtain a deeper understanding of the P. arguta growth conditions, we examined the leaf morphology and physiology via anatomical and chloroplast ultrastructural analyses following exposure to different natural light intensities (full light, 40%, and 10%). The findings indicated that P. arguta seedings in the 10% light intensity had significantly improved leaf morphological characteristics and specific leaf area compared to those exposed to other intensities. The net photosynthetic rate, chlorophyll (Chl) content, photosynthetic nitrogen use efficiency (PNUE), and photosynthetic phosphorus use efficiency (PPUE) exhibited marked increases at a 10% light intensity compared to both 40% light and full light intensities, whereas the light compensation point and dark respiration levels reached their lowest values under the 10% light condition. With reduced light, leaf thickness, palisade tissue, spongy tissue, and stomatal density significantly decreased, whereas the stomatal length, stomatal width, and stomatal aperture were significantly elevated. When exposed to 10% light intensity, the ultrastructure of chloroplasts was well developed, chloroplasts and starch grain size, the number of grana, and thylakoids all increased significantly, while the number of plastoglobules was significantly reduced. Relative distance phenotypic plasticity index analysis exhibited that P. arguta adapts to varying light environments predominantly by adjusting PPUE, Chl b, PNUE, chloroplast area, and the activity of PSII reaction centers. We proposed that P. arguta efficiently utilizes low light to reconfigure its energy metabolism by regulating its leaf structure, photosynthetic capacity, nutrient use efficiency, and chloroplast development.
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