microbial ecosystem

微生物生态系统
  • 文章类型: Journal Article
    环境污染日益受到关注,特别是污水处理气体对大气温室效应的影响。有效的污水资源回收对实现碳中和至关重要。细菌-藻类共生污水处理系统结合了污水处理,二氧化碳固定,和生物质能回收,以实现碳中和的目标,环境保护,和高附加值产品的转化。本文介绍了利用微生物-藻类共生关系的序批光生物反应系统的构建。该系统用于分析sCOD的降解效果,TN,AN,通过改变微生物-藻类比例,在厌氧消化废水中的TP。此外,分析了微生物群落的变化,以探索该系统减少碳排放的潜力。研究结果表明:1)当细菌与藻类的比例为2:3时,TN的去除率,AN,sCOD,TP为81.38%,94.28%,75.33%,和96.56%。2)改变细菌与藻类的比例会影响混合体系中的细菌浓度,但不是细菌群落结构。结果表明,2:3的比例增强了细菌和藻类共生体对污染物的去除。3)在碳中和的背景下,本文研究了在最佳细菌与藻类比例下,通过细菌-藻类共生处理的ADE中碳排放的减少。该实验过程与完全营养消耗处理相比可减少177.03mgCO2,相当于每1m3ADE减少355.08gCO2。对于完全厌氧处理,该实验过程可以减少228.35mgCO2当量CH4,这相当于每1m3ADE减少456.71gCO2当量CH4。
    Environmental pollution is a growing concern, particularly the impact of sewage treatment gas on the atmosphere\'s greenhouse effect. Efficient sewage resource recycling is crucial to achieving carbon neutrality. The bacteria-algae symbiotic sewage treatment system combines wastewater treatment, carbon dioxide fixation, and biomass energy recovery to achieve the goal of carbon neutrality, environmental protection, and the transformation of high-value added products. This paper presents the construction of a sequencing batch photobiological reaction system that utilizes a microbial-algae symbiotic relationship. The system was used to analyze the degradation effects of sCOD, TN, AN, and TP in anaerobic digestion wastewater by varying the microbial-algae ratios. Additionally, changes in the microbial community were analyzed to explore the system\'s potential for reducing carbon emissions. The study\'s findings indicate that: 1)When the ratio of bacteria to algae was 2:3, the removal rates of TN, AN, sCOD, and TP were 81.38%, 94.28%, 75.33%, and 96.56%. 2)Changing the ratio of bacteria to algae would affect the bacterial concentration in the mixed system, but not the bacterial community structure. The results indicate that a ratio of 2:3 enhances the removal of pollutants by bacteria and algae symbionts.3) Under the context of carbon neutralization, this paper investigates the reduction of carbon emissions in ADE treated by bacteria-algae symbiosis at the optimal bacteria to algae ratio. The experimental process can reduce 177.03 mg CO2 compared to complete nutrient consumption treatment, which is equivalent to a reduction of 355.08 g CO2 per 1 m3 of ADE. For full anaerobic treatment, this experimental process can reduce 228.35 mg of CO2 equivalent CH4, which translates to a reduction of 456.71 g of CO2 equivalent CH4 per 1 m3 of ADE.
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  • 文章类型: Journal Article
    肠道微生物群,一个复杂而动态的微生物生态系统,在调节肠道屏障中起着至关重要的作用。多糖觅食专门致力于建立和维持微生物群落,有助于肠道生态系统的塑造,并最终增强肠道屏障的完整性。单个多糖的利用和调节通常依赖于不同的肠道定殖细菌。它们的代谢产物不仅有利于生态系统的形成,而且有利于交叉饲养伙伴关系。在这次审查中,我们阐明了特定细菌降解多糖的机制,以及多糖代谢如何通过交叉饲喂塑造微生物生态系统。此外,我们探讨了选择性地促进微生物生态系统及其代谢产物如何有助于改善肠道屏障的完整性。
    The gut microbiota, a complex and dynamic microbial ecosystem, plays a crucial role in regulating the intestinal barrier. Polysaccharide foraging is specifically dedicated to establishing and maintaining microbial communities, contributing to the shaping of the intestinal ecosystem and ultimately enhancing the integrity of the intestinal barrier. The utilization and regulation of individual polysaccharides often rely on distinct gut-colonizing bacteria. The products of their metabolism not only benefit the formation of the ecosystem but also facilitate cross-feeding partnerships. In this review, we elucidate the mechanisms by which specific bacteria degrade polysaccharides, and how polysaccharide metabolism shapes the microbial ecosystem through cross-feeding. Furthermore, we explore how selectively promoting microbial ecosystems and their metabolites contributes to improvements in the integrity of the intestinal barrier.
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  • 文章类型: Journal Article
    微生物燃料电池(MFC)是一种有前途的生物电化学技术,可同时发电和废水净化。利用太阳能为MFC运营提供可持续电力具有巨大潜力。在这项研究中,通过电微生物和光合藻类的合作,成功建立了半人工光合自循环MFC生态系统。生态系统可以在没有碳源的情况下连续运行,并在辐照下产生150mV的电压。辐照使生态系统的最大功率密度加倍,与黑暗条件相比,达到8.07W/m2。循环伏安法(CV)和电化学阻抗谱(EIS)的结果表明,生态系统中有更高的扩散能力或更快的电子补充能力。此外,对生态系统去除铬(Cr(VI))的能力进行了全面的研究。在辐照下,与黑暗条件相比,生态系统的Cr(VI)去除率提高了2.25倍。最后,16SrRNA扩增子测序结果表明,生态系统中严格和兼性好氧电活性细菌的相对丰度增加,包括柠檬酸杆菌(21%),芽孢杆菌(15%)和肠球菌(6%)。生态系统提供了一个小说,自我维持的方法,以应对能源回收和环境污染的挑战。
    The microbial fuel cell (MFC) is a promising bio-electrochemical technology that enables simultaneous electricity generation and effluent purification. Harnessing solar energy to provide sustainable power for MFC operation holds great potential. In this study, a semiartificial photosynthetic self-circulating MFC ecosystem is successfully established through the collaboration of electrogenic microorganisms and photosynthetic algae. The ecosystem can operate continuously without carbon sources and produces a voltage of 150 mV under irradiation. The irradiation doubles the maximum power density of the ecosystem, reaching 8.07 W/m2 compared to dark conditions. The results of cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS) suggest a higher diffusion capacity or faster electron replenishment ability within the ecosystem. Furthermore, the capacity of ecosystem for removing chromium (Cr(VI)) has been investigated comprehensively. Under irradiation, the ecosystem demonstrates a 2.25-fold increase in Cr(VI) removal rate compared to dark conditions. Finally, the results of 16S rRNA amplicon sequencing indicates an increase in the relative abundance of strict and facultative aerobic electroactive bacteria in the ecosystem, including Citrobacter (21 %), Bacillus (15 %) and Enterococcus (6 %). The ecosystem offers a novel, self-sustaining approach to address the challenges of energy recovery and environmental pollution.
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  • 文章类型: Journal Article
    目的:原发性胆总管结石是一种常见的消化系统疾病,发病率高,复发率高。然而,胆汁微生物生态系统的组成和功能以及导致结石形成的宿主代谢的微花调节的发病机理知之甚少。
    方法:从良性胆管狭窄引起的急性胆管炎患者(非结石组,n=17)和原发性胆总管结石(结石组,n=33)进行多组学分析。此外,对24个月随访期间收集的临床病理特征进行检查,以评估候选微生物的预测价值。
    结果:结石组胆汁微生物组的5个α多样性指数显著降低。此外,我们确定了两组之间49种不同的胆汁菌群,和6种细菌的相对丰度,放线菌,放线菌,葡萄球菌,微球菌,变温杆菌和肉芽胞杆菌科,与原发性胆总管结石复发有关。多组学分析表明,疾病相关细菌分类群的特定变化与代谢物变异密切相关(低分子量羧酸,甾醇液体和酰基肉碱),这可能反映疾病的预后。根据微生物组学和代谢组学途径分析,我们发现细菌感染,在结石形成组中,微生物来源的氨基酸代谢产物和次级胆汁酸相关通路显著富集,提示原发性胆总管结石的一种新的宿主微生物代谢机制。
    结论:我们的研究首先表明胆汁宿主微生物菌群失调调节代谢物的异常积累可能进一步破坏钙稳态并产生不溶性皂化。此外,我们确定了放线菌门减少对原发性胆总管结石患者复发的预测价值。
    OBJECTIVE: Primary choledocholithiasis is a common digestive disease with high morbidity and relapse. However, the compositions and functions of the bile microbial ecosystem and the pathogenesis of microfloral regulation of host metabolism resulting in stone formation are poorly understood.
    METHODS: Biliary samples collected from patients with acute cholangitis induced by benign biliary stricture (nonlithiasis group, n = 17) and primary choledocholithiasis (lithiasis group, n = 33) were subjected to multiomics analyses. Furthermore, clinicopathological features collected over a 24-month follow-up period were examined to evaluate the predictive value of candidate microbes.
    RESULTS: Five alpha diversity indices of the bile microbiome were significantly decreased in the lithiasis group. Furthermore, we identified 49 differential bile flora between the two groups, and the relative abundances of 6 bacteria, Actinobacteria, Actinobacteriota, Staphylococcales, Micrococcales, Altererythrobacter and Carnobacteriaceae, were associated with primary choledocholithiasis relapse conditions. Multiomics analyses showed that specific changes in disease-related bacterial taxa were closely related to metabolite variation (low-molecular weight carboxylic acids, sterol liquid and acylcarnitine), which might reflect disease prognosis. According to microbiomic and metabolomic pathway analyses, we revealed that bacterial infections, microbiota-derived amino acid metabolites and secondary bile acid-related pathways were significantly enriched in the stone-formation group, suggesting a novel host-microbial metabolic mechanism of primary choledocholithiasis.
    CONCLUSIONS: Our study first indicates bile host-microbial dysbiosis modulates the abnormal accumulation of metabolites might further disrupt calcium homeostasis and generate insoluble saponification. Additionally, we determined the predictive value of Actinomycetes phylum reduction for recurrence in primary common bile duct stone patients.
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  • 文章类型: Journal Article
    在自然条件下,葡萄表皮上存在一个复杂而动态的微生物生态系统,这在保障葡萄健康和促进葡萄转化为葡萄酒方面发挥着重要作用。然而,当前的葡萄栽培和酿酒充斥着过量的化学添加剂和商业发酵,导致微生物多样性减少,影响自然微生物群的生态平衡,掩盖葡萄酒风土。该实验全面探索了从Ecolly(VitisviniferaL.)葡萄表皮到自发发酵两年来自然微生物区系的连续变化。结果表明,年份和生长期对微生物群落结构和组成有显著影响,在生长季节,真菌属比细菌属更稳定。真菌属Alternaria,阿斯科奇塔,赤霉素和地佐菌以及泛菌属,Sediminibacterium,在这两年中,葡萄表皮上主要存在拉氏菌和鞘氨醇单胞菌。从葡萄生长到自发发酵,自然微生物多样性下降,发酵环境重塑了群落结构,葡萄酒微生物群落的组成和多样性。这些发现为促进栽培和发酵管理策略提供了见解,提倡葡萄和葡萄酒的自然风土属性,促进葡萄酒产业的可持续发展。
    Under natural conditions, a complex and dynamic microbial ecosystem exists on the grape epidermis, which plays an important role in safeguarding grape health and facilitating the conversion of grapes into wine. However, current viticulture and vinification are flooded with excessive chemical additives and commercial ferments, leading to a reduction in microbial diversity, affecting the ecological balance of the natural microbiota and masking the wine terroir. This experiment comprehensively explored the continuous changes in the natural microbiota from the Ecolly (Vitis vinifera L.) grape epidermis to spontaneous fermentation over two years. The results suggested that microbial community structure and composition were significantly influenced by vintage and growing stage, with fungal genera being more stable than bacterial genera during the growing season. The fungal genera Alternaria, Ascochyta, Gibberella and Dissoconium and the bacterial genera Pantoea, Sediminibacterium, Ralstonia and Sphingomonas were mainly present on the grape epidermis in both years. The natural microbial diversity decreased from grape growth to spontaneous fermentation, and the fermentation environment reshapes the community structure, composition and diversity of the wine microbial consortium. These findings provide insights to promote cultivation and fermentation management strategies, advocate natural terroir attributes for grapes and wines, and promote sustainable development of the wine industry.
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  • 文章类型: Journal Article
    葡萄表面微生物生态系统的结构和功能多样性影响浆果的健康和葡萄酒的风味,这也是由许多因素改变的,例如气候,天气条件,农艺实践,和生理发育。了解和探索葡萄成熟过程中表面微生物生态系统的自然特征,通过IlluminaNovaseq平台测序确定了Ecolly葡萄皮肤上真菌和细菌群落的物种组成和动态。结果表明,获得了2146个真菌OTUs和4175个细菌OTUs,属于4个真菌门和20个细菌门。Shannon指数表明,真菌群落在收获阶段具有最高的物种多样性,而细菌群落在收获阶段具有最高的物种多样性。葡萄成熟过程中的四个优势真菌属是链格孢菌,Naganishia,Filobasidium,和梭子蟹,占真菌群落总数的82.8%,优势细菌属包括鞘氨醇单胞菌,Brevundimonas,异型根瘤菌-新根瘤菌-副根瘤菌-根瘤菌,还有Massilia,占细菌群落总数的77.9%。葡萄微生物生态系统的物种丰富度和多样性在成熟期不断变化,某些核心微生物属之间有很强的相关性,可能对群落的功能和生态作用产生重要影响。本研究为了解葡萄成熟过程中葡萄表面微生物生态系统的自然特性提供了依据,以及微生态驱动葡萄栽培管理系统的可持续生产理念。
    The structural and functional diversities of the microbial ecosystem on the grape surface affect the health of berries and the flavor of wines, which are also changed by many factors such as climate, weather conditions, agronomic practices, and physiological development. To understand and explore the natural characteristics of the grape surface microbial ecosystem during ripening, the species composition and dynamics of fungal and bacterial communities on the skin of Ecolly grape were determined by Illumina Novaseq platform sequencing. The results showed that 2146 fungal OTUs and 4175 bacterial OTUs were obtained, belonging to four fungal phyla and 20 bacterial phyla. The Shannon index indicated that the fungal community had the highest species diversity at the véraison stage and the bacterial community at the harvest stage. The four dominant fungal genera during grape ripening were Alternaria, Naganishia, Filobasidium, and Aureobasidium, which accounted for 82.8% of the total fungal community, and the dominant bacterial genera included Sphingomonas, Brevundimonas, Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium, and Massilia, which accounted for 77.9% of the total bacterial community. The species richness and diversity in the grape microbial ecosystem changed constantly during the maturation stages, and there were strong correlations between certain core microbial genera, which may have an important impact on the function and ecological role of the community. This study provides a basis for understanding the natural characteristics of the microbial ecosystem on the grape surface during grape ripening, as well as the sustainable production concept of the microecology driving the viticulture management system.
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  • 文章类型: Journal Article
    Methane emission from ruminants not only causes serious environmental problems, but also represents a significant source of energy loss to animals. The increasing demand for sustainable animal production is driving researchers to explore proper strategies to mitigate ruminal methanogenesis. Since hydrogen is the primary substrate of ruminal methanogenesis, hydrogen metabolism and its associated microbiome in the rumen may closely relate to low- and high-methane phenotypes. Using candidate microbes that can compete with methanogens and redirect hydrogen away from methanogenesis as ruminal methane mitigants are promising avenues for methane mitigation, which can both prevent the adverse effects deriving from chemical additives such as toxicity and resistance, and increase the retention of feed energy. This review describes the ruminal microbial ecosystem and its association with methane production, as well as the effects of interspecies hydrogen transfer on methanogenesis. It provides a scientific perspective on using bacteria that are involved in hydrogen utilization as ruminal modifiers to decrease methanogenesis. This information will be helpful in better understanding the key role of ruminal microbiomes and their relationship with methane production and, therefore, will form the basis of valuable and eco-friendly methane mitigation methods while improving animal productivity.
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  • 文章类型: Journal Article
    Proper disposal of excess sludge and steady maintenance of the high bioactivity of activated sludge in bioreactors are essential for the successful operation of wastewater treatment plants (WWTPs). Since sludge is a non-Newtonian fluid, the rheological behavior of sludge can therefore have a significant impact on various processes in a WWTP, such as fluid transportation, mixing, oxygen diffusion, mass transfer, anaerobic digestion, chemical conditioning and mechanical dewatering. These are key factors affecting the operation efficiency and the energy consumption of the entire process. In the past decade-due to the production of large quantities of excess sludge associated with the extensive construction of WWTPs and the emergence of some newly-developed techniques for wastewater purification characterized by high biomass concentrations-investigations into the rheology of sludge are increasingly important and this topic has aroused considerable interests. We reviewed a number of investigations into the rheology of sludge, with the purpose of providing systematic and detailed analyses on the related aspects of the rheological behavior of sludge. It is clear that, even though considerable research has focused on the rheology of sludge over a long time period, there is still a need for further thorough investigation into this field. Due to the complex process of bio-treatment in all WWTPs, biological factors have a major influence on the properties of sludge. These influences are however still poorly understood, particularly with respect to the mechanisms involved and magnitude of such impacts. When taking note of the conspicuous biological characteristics of sludge, it becomes important that biological factors, such as the species composition and relative abundance of various microorganisms, as well as the microbial community characteristics that affect relevant operating processes, should be considered.
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  • 文章类型: Journal Article
    The importance of spoilage-related bacteria in fresh Pacific white shrimp (Litopenaeus vannamei) under different modified atmospheres (MAs) at 4 °C and the effect of O2 were demonstrated in the current study. The changes of bacterial communities in MA-packed shrimp during cold storage were studied by a combined method of plate counts with isolation and identification. Three gas mixtures were applied: 80% CO2 /5% O2 /15% N2, 80% CO2 /10% O2 /10% N2 and 80% CO2 /20% O2, and unsealed packages of shrimp were used as the control. In addition, the TVB-N, pH, whiteness index, and sensory scores were also determined to evaluate the quality changes of shrimp. MA packaging effectively inhibited the increase of total psychrotrophic bacteria counts and H2 S-producing bacteria counts by about 1.7 and 2.1 log cycles, respectively. The growth of Gram-negative spoilage bacteria in shrimp, including Shewanella spp., Aeromonas spp., and Pseudomonas spp., was inhibited by MA packaging, but the growth rate of Gram-positive bacteria such as lactic acid bacteria (LAB) and Brochothrix spp. were less affected by MA as effectively as Gram-negative bacteria. In comparison with the MA-packaged samples, the counts of H2 S producers in shrimp under a CO2 -enriched atmosphere with 20% O2 were slightly lower than the count in samples under an atmosphere with 5% O2 . However, MA with 20% O2 led to higher concentrations of TVB-N, and lower whiteness values and sensory scores. The shelf life of shrimp under 80% CO2 /10% O2 /10% N2 has been prolonged by > 6 d in comparison with the control according to the sensory scores.
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