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  • 文章类型: Journal Article
    图卷积网络(GCN)可以被认为是图表示学习的最重要的方法之一,GCN家族最近在社区中取得了巨大成功。然而,在现实世界的场景中,图形数据可能不完美,例如,具有嘈杂和稀疏的特征或标签,这对GCN的鲁棒性提出了很大的挑战。为了迎接这一挑战,我们为GCN提出了一种简单而有效的Lambel-EnhancedNetworks(LaenNet)架构,其中基本精神是将标签与特征一起传播。具体来说,我们在GCN的一个隐藏层添加了一个额外的LaenNet模块,它沿着图形传播标签,然后将它们与隐藏表示作为更深层的输入。所提出的LaenNet可以直接推广到GCN的变体。我们进行了大量的实验,以验证LaenNet在四个嘈杂和稀疏图数据场景下的半监督节点分类任务,包括具有嘈杂特征的图形,稀疏特征,嘈杂的标签,和稀疏标签。经验结果表明,与最先进的基线模型相比,LaenNet具有优越性和鲁棒性。实现代码可用于简化可重复性1。
    Graph Convolutional Networks (GCNs) can be acknowledged as one of the most significant methodologies for graph representation learning, and the family of GCNs has recently achieved great success in the community. However, in real-world scenarios, the graph data may be imperfect, e.g., with noisy and sparse features or labels, which poses a great challenge to the robustness of GCNs. To meet this challenge, we propose a simple-yet-effective LAbel-ENhanced Networks (LaenNet) architecture for GCNs, where the basic spirit is to propagate labels together with features. Specifically, we add an extra LaenNet module at one hidden layer of GCNs, which propagates labels along the graph and then integrates them with the hidden representations as the inputs to the deeper layer. The proposed LaenNet can be directly generalized to the variants of GCNs. We conduct extensive experiments to verify LaenNet on semi-supervised node classification tasks under four noisy and sparse graph data scenarios, including the graphs with noisy features, sparse features, noisy labels, and sparse labels. Empirical results indicate the superiority and robustness of LaenNet compared to the state-of-the-art baseline models. The implementation code is available to ease reproducibility1.
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  • 文章类型: Journal Article
    小细胞外囊泡(sEV),源自内体区室的细胞外囊泡(EV)的子集,是一种由几乎所有类型的细胞释放的脂质双层囊泡,作为核酸的天然载体,蛋白质,和脂质用于生物活性分子的细胞间通讯和转移。目前的发现表明它们在生理和病理过程中的重要作用。已经开发了各种sEV标记技术,用于更高级的功能研究,行动模式,生物分布,及相关信息。在这次审查中,我们总结了现有和新兴的电动汽车标记技术,包括荧光标记,放射性同位素标记,纳米颗粒标记,化学造影剂标签,和无标签技术。这些方法将为深入研究电动汽车铺平道路。我们对这些原则进行了系统全面的审查,优势,缺点,以及这些技术的应用,以帮助促进这些标记方法在未来的sEV研究中的应用。
    Small extracellular vesicles (sEVs), a subset of extracellular vesicles (EVs) originating from the endosomal compartment, are a kind of lipid bilayer vesicles released by almost all types of cells, serving as natural carriers of nucleic acids, proteins, and lipids for intercellular communication and transfer of bioactive molecules. The current findings suggest their vital role in physiological and pathological processes. Various sEVs labeling techniques have been developed for the more advanced study of the function, mode of action, bio-distribution, and related information of sEVs. In this review, we summarize the existing and emerging sEVs labeling techniques, including fluorescent labeling, radioisotope labeling, nanoparticle labeling, chemical contrast agents labeling, and label-free technique. These approaches will pave the way for an in-depth study of sEVs. We present a systematic and comprehensive review of the principles, advantages, disadvantages, and applications of these techniques, to help promote applications of these labeling approaches in future research on sEVs.
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  • 文章类型: Journal Article
    探讨氯甲基二烷基碳青(CM-Dil)标记的多谱系分化应激持久(Muse)细胞在大鼠培养物中和皮肤伤口中的特征。正常人皮肤成纤维细胞(NHDF)从包皮中获得,并通过波形蛋白的免疫细胞化学进行确认。Muse细胞来自NHDF,使用长期胰蛋白酶消化(LTT),使用针对阶段特异性胚胎抗原-3(SSEA-3)和CD105的抗体的免疫细胞化学证实,并在悬浮培养物中扩增。用CM-Dil标记Muse细胞,并使用CCK-8测定和划痕测试进一步评估其生物学特性。在成年雄性SD大鼠的皮肤伤口边缘皮下注射100μl浓度为5×103/μl的CM-Dil标记的Muse细胞。注射后第1、3和5周,使用免疫荧光显微镜观察CM-Dil标记的Muse细胞在皮肤组织中的分布。Muse细胞对CD105和SSEA-3呈双阳性。M-簇的ALP染色呈阳性,用CM-Dil标记后显示橙红色荧光,对它们的生存能力没有不利影响,迁移或分化能力。皮下注射CM-Dil标记的Muse细胞后一周,在皮肤损伤的边缘观察到许多具有橙红色荧光的细胞;这些荧光斑点随着时间的推移逐渐减少,到第5周,只有少数具有荧光的Muse细胞可以被检测到。CM-Dil可用于标记Muse细胞而不影响其增殖,迁移或分化,可用于短期追踪Muse细胞治疗大鼠皮肤创伤模型。
    To investigate the characteristics of multilineage-differentiating stress-enduring (Muse) cells labeled with chloromethyl dialkylcarbocyanine (CM-Dil) in culture and in skin wounds of rats. Normal human dermal fibroblasts (NHDFs) were obtained from foreskins and were confirmed by immunocytochemistry with vimentin. Muse cells were derived from NHDFs using long-term trypsinization (LTT), were confirmed using immunocytochemistry with antibodies against stage specific embryonic antigen-3 (SSEA-3) and CD105 and were expanded in suspension cultures. The Muse cells were labeled with CM-Dil and were further evaluated with respect to their biological properties using CCK-8 assays and scratch tests. One hundred µl CM-Dil-labeled Muse cells at a concentration of 5 × 103/µl were injected subcutaneously at the edges of skin wounds in adult male SD rats. At weeks 1, 3 and 5 after the injection, the distribution of CM-Dil-labeled Muse cells in skin tissues was observed using immunofluorescence microscopy. Muse cells were double-positive for CD105 and SSEA-3. ALP staining of the M-clusters were positive and they displayed orange-red fluorescence after labelling with CM-Dil, which had no adverse effects on their viability, migration or differentiation capacity. One week after the subcutaneous injection of CM-Dil-labeled Muse cells, many cells with orange-red fluorescence were observed at the edges of the skin injuries; those fluorescent spots gradually decreased over time, and only a few Muse cells with fluorescence could be detected by week 5. CM-Dil can be used to label Muse cells without affecting their proliferation, migration or differentiation, and can be used for short-term tracking of Muse cells for the treatment of skin wounds in a rat model.
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  • 文章类型: Review
    发展中国家的人口增长和肉类消费热情的上升增加了全球对动物蛋白的需求。传统肉类产量增长有限,这导致了高资源消耗,温室气体排放,和人畜共患疾病,影响了肉类蛋白质的可持续供应。源自植物和微生物蛋白的肉类似物的技术发展和商业化提供了解决上述问题的策略。然而,在这些创新食品上市之前,他们应遵守法规和标准,以确保食品安全和消费者权利。本文简要概述了基于植物和真菌的肉类类似物产品的全球发展现状和面临的挑战。它侧重于当前的状态,特点,以及全球范围内有关植物和真菌肉类似物的法规和标准的争议,并从确保安全和支持创新的角度提出了完善监管体系的建议。尽管以植物和真菌为基础的肉类类似物在世界各地的某个时期都有安全用作食品的历史,名称和产品标准不确定,影响产品创新和全球销售。监管部门应及时制定和修订法规或标准,明确肉类类似物的命名和产品标准,特别是动物源性成分的使用和营养素的限制(例如,蛋白质,脂肪,维生素,和矿物),不断向市场推出初创产品。
    Population growth and the rising enthusiasm for meat consumption in developing countries have increased the global demand for animal protein. The limited increase in traditional meat production, which results in high resource consumption, greenhouse gas emissions, and zoonotic diseases, has affected the sustainable supply of meat protein. The technological development and commercialization of meat analogs derived from plant and microbial proteins provide a strategy for solving the abovementioned problems. However, before these innovative foods are marketed, they should comply with regulations and standards to ensure food safety and consumer rights. This review briefly summarizes the global development status and challenges of plant- and fungi-based meat analog products. It focuses on the current status, characteristics, and disputes in the regulations and standards worldwide for plant- and fungi-based meat analogs and proposes suggestions for perfecting the regulatory system from the perspective of ensuring safety and supporting innovation. Although plant- and fungi-based meat analogs have had a history of safe usage as foods for a certain period around the world, the nomenclature and product standards are uncertain, which affects product innovation and global sales. Regulatory authorities should promptly formulate and revise regulations or standards to clarify the naming of meat analogs and product standards, especially the use of animal-derived ingredients and limits of nutrients (e.g., protein, fat, vitamins, and minerals) to continuously introduce start-up products to the market.
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  • 文章类型: Journal Article
    具有特殊官能团的标记材料对于创建新型探针非常有价值。因此,通过将4-丁基-3-氨基硫脲(BTSC)与碳点(CD)缀合,构建了一种新型荧光探针。BTSC标记的CD(BTSC-CD)显示出很强的Cu2识别能力,并且Cu2可以显着抑制BTSC-CD的发射。荧光猝灭被证明是由BTSC-CD和Cu2+相互作用形成基态BTSC-CD/Cu2+络合物引起的静态猝灭,荧光强度在0.20-30μM范围内与Cu2浓度呈良好的线性相关。更重要的是,通过将草甘膦添加到BTSC-CD/Cu2+的传感器系统中,由于草甘膦和Cu2+之间的螯合作用比BTSC-CD和Cu2+之间更强,探针的荧光再次打开。该方法可实现草甘膦的特异性检测,检出限低至0.27μM。使用复杂的BTSC-CD/Cu2系统在实际样品中检测草甘膦,结果令人满意,表明已提供了用于Cu2和随后的草甘膦检测的新型荧光探针。
    Labeling materials with special functional groups are very valuable for the creation of novel probes. Hence, a novel fluorescent probe was constructed by conjugating 4-butyl-3-thiosemicarbazide (BTSC) with carbon dots (CDs). The CDs labeled by BTSC (BTSC-CDs) displayed a strong capability for recognition of Cu2+ and Cu2+ could quench the emission of BTSC-CDs significantly. The fluorescence quenching was proved to be a static quenching which was resulted from the interaction between BTSC-CDs and Cu2+ to form a ground-state BTSC-CDs/Cu2+complex, and the fluorescence intensities showed a good linear correlation with Cu2+ concentrations in the range of 0.20-30 μM. What is more important, by adding glyphosate into the sensor system of BTSC-CDs/Cu2+ the fluorescence of the probe turned on again owing to the stronger chelating between glyphosate and Cu2+ than between BTSC-CDs and Cu2+. This could realize the specific detection of glyphosate and the limit of detection was low to 0.27 μM. Detecting glyphosate using the complex BTSC-CDs/Cu2+ system in actual samples with satisfactory outcomes indicated that a novel fluorescent probe for Cu2+ and subsequent glyphosate detections has been provided.
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  • 文章类型: Journal Article
    红色荧光蛋白可用作神经元的形态标记,通常补充基于绿色荧光蛋白的神经元活动探针。然而,常用的红色荧光蛋白显示聚集和毒性在神经元或暗淡。我们报道了一种鲜红色荧光蛋白的工程,Crimson,这使得神经元的长期形态标记没有聚集或毒性。Crimson在荧光光谱上与mCherry和mKate2相似,但分子亮度高100%和28%,分别。我们用膜定位的Crimson-CAAX标记薄神经突,树突棘和丝状足,与胞质标记物相比,增强了对这些小结构的检测。
    Red fluorescent proteins are useful as morphological markers in neurons, often complementing green fluorescent protein-based probes of neuronal activity. However, commonly used red fluorescent proteins show aggregation and toxicity in neurons or are dim. We report the engineering of a bright red fluorescent protein, Crimson, that enables long-term morphological labeling of neurons without aggregation or toxicity. Crimson is similar to mCherry and mKate2 in fluorescence spectra but is 100 and 28% greater in molecular brightness, respectively. We used a membrane-localized Crimson-CAAX to label thin neurites, dendritic spines and filopodia, enhancing detection of these small structures compared to cytosolic markers.
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  • 文章类型: Journal Article
    细胞外囊泡(EV)是一类脂质双层膜,含有脂质,核酸(DNA和RNA),蛋白质,和其他物质。它们由几乎所有类型的细胞产生,并通过涉及复杂信号的不同机制充当细胞和/或组织之间的信号中介。每种类型的细胞产生的EV由具有不同生物学功能的高度异质和不均匀的亚组组成。因此,在过去的几十年里,研究人员试图使用不同的“标签”来定义电动汽车的亚组,并探索它们之间的差异。然而,到目前为止,尚未建立定义电动汽车种群的统一标准。在这项研究中,我们回顾并总结了使用不同的“标签”来定义电动汽车子组。
    Extracellular vesicles (EVs) are a class of lipid bilayer membranes, containing lipids, nucleic acids (DNA and RNA), proteins, and other substances. They are produced by almost all types of cells and act as signaling intermediaries between cells and/or tissues through different mechanisms involving complex signals. EVs produced by each type of cells are composed of highly heterogeneous and inhomogeneous subgroups with different biological functions. Therefore, in the past few decades, researchers have tried to use different \"labels\" to define the subgroups of EVs, and explore the differences in them. However, a unified standard for defining the populations of EVs has not yet been established so far. In this study, we review and summarize the use of different \"labels\" to define subgroups of EVs.
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  • 文章类型: Journal Article
    OBJECTIVE: By discussing the corresponding situation of PIM criteria and labels, it provides a reference for the formulation and update of the criteria and the content of the section of \"medications for the elderly\" in the labels, so as to realize rational drug use for the elderly.
    METHODS: Extract the four indicators of Beers criteria, STOPP criteria, and the EU(7)-PIM list that involve dosage, duration, age, and mortality, and compare them with the latest labels for drugs marketed in the USA and the EU.
    RESULTS: There are 148 drugs involving four indicators in the criteria, and 85.14% of the drugs are found in at least one region. In terms of dose, there are 28 drugs with inconsistent descriptions in the labels of the two regions, accounting for 47.46% of the 59 drugs found in both regions. A total of 42.37% of the drugs are consistent in both regions with the criteria (25/59), 28.81% of the drugs are inconsistent in both regions with the criteria (17/59), and 28.81% of the drugs are inconsistent in only one region with the criteria (17/59). The doses of 50 drugs found in F/D labels are consistent with the criteria, accounting for 54.35% of the 92 drugs found in F/D labels, and of 41 drugs found in E/H SmPC are consistent with the criteria, accounting for 60.29% of the 68 drugs found in E/H SmPC. Only the duration of omeprazole in the labels in both regions is consistent with the criteria, and only the age of prasugrel in both regions is consistent with the criteria. Five drugs whose labels mentioned increased mortality, accounting for 38.46% of the 13 drugs found in both regions.
    CONCLUSIONS: There are certain differences between PIM criteria and PIM criteria, labels and labels, and PIM criteria and labels, which will affect the use of drugs in the elderly. Therefore, the unity between the criteria and labels should be strengthened to provide more instructive guidance for the elderly, so as to jointly realize rational drug use in the elderly.
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  • 文章类型: Journal Article
    细胞器参与许多细胞生命活动,它们的代谢或功能紊乱与细胞凋亡密切相关,神经退行性疾病,心血管疾病,以及癌症的发展和转移。亚细胞结构的探索,微环境,他们的异常情况有助于更深入地理解许多病理机制,有望实现疾病的早期诊断和有效治疗。细胞器也是药物的目标位置,它们在许多靶向治疗策略中起着重要作用。表面增强拉曼光谱(SERS)是一种强大的分析工具,可以以非侵入性和非破坏性的方式提供亚细胞区室的分子指纹信息和实时细胞动力学。本文旨在总结SERS在亚细胞区室中的研究进展。包括五个部分。介绍了SERS和亚细胞区室。由于其分子特异性和高灵敏度,SERS在亚细胞区室研究中很有前途。两者都高度匹配细胞/亚细胞研究的高要求。细胞内SERS主要分类为标记和无标记方法。对于亚细胞靶向检测和治疗,如何内化等离子体纳米粒子或纳米结构的目标位置是一个关键点。亚细胞室SERS检测,分离细胞器的SERS测量,研究亚细胞区室和微环境的治疗机制,依次提出了SERS诊断和治疗的整合。从六个方面对亚细胞SERS研究进行了展望。本文综述了SERS在亚细胞区室研究中的应用,这将是设计涉及SERS的治疗系统的有用参考。
    Organelles are involved in many cell life activities, and their metabolic or functional disorders are closely related to apoptosis, neurodegenerative diseases, cardiovascular diseases, and the development and metastasis of cancers. The explorations of subcellular structures, microenvironments, and their abnormal conditions are conducive to a deeper understanding of many pathological mechanisms, which are expected to achieve the early diagnosis and the effective therapy of diseases. Organelles are also the targeted locations of drugs, and they play significant roles in many targeting therapeutic strategies. Surface-enhanced Raman spectroscopy (SERS) is a powerful analytical tool that can provide the molecular fingerprint information of subcellular compartments and the real-time cellular dynamics in a non-invasive and non-destructive way. This review aims to summarize the recent advances of SERS studies on subcellular compartments, including five parts. The introductions of SERS and subcellular compartments are given. SERS is promising in subcellular compartment studies due to its molecular specificity and high sensitivity, and both of which highly match the high demands of cellular/subcellular investigations. Intracellular SERS is mainly cataloged as the labeling and label-free methods. For subcellular targeted detections and therapies, how to internalize plasmonic nanoparticles or nanostructure in the target locations is a key point. The subcellular compartment SERS detections, SERS measurements of isolated organelles, investigations of therapeutic mechanisms from subcellular compartments and microenvironments, and integration of SERS diagnosis and treatment are sequentially presented. A perspective view of the subcellular SERS studies is discussed from six aspects. This review provides a comprehensive overview of SERS applications in subcellular compartment researches, which will be a useful reference for designing the SERS-involved therapeutic systems.
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  • 文章类型: Journal Article
    China has the highest mortality rate caused by diseases and conditions associated with its high-salt diet. Since 2016, China has initiated a national salt reduction campaign that aims at promoting the usage of salt information on food labels and salt-restriction spoons and reducing condiment and pickled food intake. However, factors affecting individuals\' decisions to adopt these salt reduction measures remain largely unknown. By comparing the performances of logistic regression, stepwise logistic regression, lasso logistic regression and adaptive lasso logistic regression, this study aims to fill this gap by analyzing the adoption behaviour of 1610 individuals from a nationally representative online survey. It was found that the practices were far from adopted and only 26.40%, 22.98%, 33.54% and 37.20% reported the adoption of labelled salt information, salt-restriction spoons, reduced condiment use in home cooking and reduced pickled food intake, respectively. Knowledge on salt, the perceived benefits of salt reduction, participation in nutrition education and training programs on sodium reduction were positively associated with using salt information labels. Adoption of the other measures was largely explained by people\'s awareness of hypertension risks and taste preferences. It is therefore recommended that policy interventions should enhance Chinese individuals\' knowledge of salt, raise the awareness of the benefits associated with a low-salt diet and the risks associated with consuming excessive salt and reshape their taste choices.
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