Reducing Agents

还原剂
  • 文章类型: Journal Article
    在来自真菌的作用于多糖的酶中,裂解多糖单加氧酶(LPMOs)已成为一种新成员,具有复杂的反应机制和高效的处理顽固的结晶多糖。这项研究报告了这些特征,结构,和从马里亚纳海沟获得的新型LPMO(即MaLPMO9K)的生化特性。MaLPMO9K是一种与主体和碳水化合物结合模块结合的多结构域蛋白。它在大肠杆菌中异源表达,用于分析与底物2,6-DMP反应中的过氧化物酶活性,其中H2O2充当共底物。在pH8和25°C下观察到MaLPMO9K的最佳过氧化物酶活性,最佳Vmax值为265.2U·g-1。此外,MaLPMO9K还证明了处理纤维素衍生物的能力,和不存在还原剂的纤维二糖底物。
    Among the enzymes derived from fungus that act on polysaccharides, lytic polysaccharide monooxygenase (LPMOs) has emerged as a new member with complex reaction mechanisms and high efficiency in dealing with recalcitrant crystalline polysaccharides. This study reported the characteristics, structure, and biochemical properties of a novel LPMO from Talaromyces sedimenticola (namely MaLPMO9K) obtained from the Mariana Trench. MaLPMO9K was a multi-domain protein combined with main body and a carbohydrate-binding module. It was heterologously expressed in E. coli for analyzing peroxidase activity in reactions with the substrate 2,6-DMP, where H2O2 serves as a co-substrate. Optimal peroxidase activity for MaLPMO9K was observed at pH 8 and 25 °C, achieving the best Vmax value of 265.2 U·g-1. In addition, MaLPMO9K also demonstrated the ability to treat cellulose derivatives, and cellobiose substrates without the presence of reducing agents.
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  • 文章类型: Journal Article
    利用蛋白酶作为抗羊毛收缩整理的生物催化剂的环境效益已得到广泛认可。然而,由于单独的蛋白酶处理对含有疏水性脂肪酸的羊毛纤维的最外面的角质层没有能力,因此其功效不能令人满意。为了削弱高度交联鳞片的结构完整性,亚硫酸钠和三(2-羧乙基)膦盐酸盐(TCEP)与木瓜蛋白酶组合使用,分别,旨在获得低收缩率没有不可接受的纤维损伤。基于木瓜蛋白酶和TCEP的协同作用,羊毛鳞片的边缘被二硫键的还原稍微破坏,伴随着角蛋白成分的酶水解。通过控制羊毛鳞片的还原和水解,获得了令人满意的抗毡缩效果,而不会对纤维内部造成严重损害。在0.25g/LTCEP和25U/mL木瓜蛋白酶的存在下,羊毛织物的面积收缩率下降到约6%,具有小于8%的低强度损失。同时,羊毛织物在低温条件下的染色性能得到显著改善,导致生产过程中的能源消耗减少。本工作为羊毛织物的环保整理提供了一种替代方法,可以在商业上应用。
    The environmental benefits of utilizing protease as a biocatalyst for wool shrink-resist finishing have been widely recognized. However, the efficacy of individual protease treatment is unsatisfactory due to its incapability towards the outermost cuticle layer of wool fibers that contains hydrophobic fatty acids. In order to weaken the structural integrity of the highly cross-linked scales and promote the enzymatic anti-felting, sodium sulfite and tris (2-carboxyethyl) phosphine hydrochloride (TCEP) were employed in combination with papain, respectively, aiming at obtaining a low shrinkage without unacceptable fiber damages. Based on the synergistic effect of papain and TCEP, the edges of wool scales were slightly destroyed by the reduction of disulfide bonds, accompanied by enzymatic hydrolysis of the keratin component. Through the controlled reduction and hydrolysis of wool scales, satisfactory anti-felting result was achieved without causing severe damage to the fiber interiors. In the presence of 0.25 g/L TCEP and 25 U/mL papain, the area shrinkage of wool fabric decreased to approximately 6 %, with a low strength loss of less than 8 %. Meanwhile, the dyeing behavior of the wool fabric under low-temperature conditions was dramatically improved, leading to decreased energy consumption during production. The present work provides an alternative for eco-friendly finishing of wool fabrics, which can be applied commercially.
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  • 文章类型: Journal Article
    使用裂解多糖单加氧酶(LPMO)和多酚氧化酶建立多酶协同的木质纤维素生物降解系统对于有效利用植物生物质废物至关重要。最终有利于碳循环和促进环境保护。LPMO的单残基突变可以提高木质纤维素生物质的降解效率。然而,突变型LPMO与木质素转移还原剂相关的活性尚未得到充分探索。在这项研究中,初步研究了漆酶和酪氨酸酶,揭示了它们的最佳条件和令人印象深刻的热稳定性,表明它们与LPMO在木质纤维素生物降解中的潜在协同能力。当使用没食子酸作为还原剂时,LPMO的活动增加了10%以上,这在添加多酚氧化酶后的突变型LPMO中尤为明显。特别是,酪氨酸酶与4-羟基-3-甲氧基苯基丙酮或对香豆酸的组合显示可增强LPMO的功效。此外,在添加漆酶和3-甲基儿茶酚的情况下观察到野生型LPMO的最高活性水平。野生和突变LPMO在木质素转移的酚类化合物和还原剂中的活性几乎相同,这表明LPMO的单残基突变对其性能没有不利影响。最重要的是,这项研究表明,了解野生型和突变型LPMO在多酚氧化酶和各种还原剂存在下的表现是多酶降解木质纤维素产业化的关键环节。
    Establishing a multi-enzyme synergistic lignocellulosic biodegradation system using lytic polysaccharide monooxygenase (LPMO) and polyphenol oxidases is vital for efficiently utilizing plant biomass waste, ultimately benefiting the carbon cycle and promoting environmental protection. Single-residue mutations of LPMO can improve the efficiency of lignocellulosic biomass degradation. However, the activity of mutant-type LPMO in relation to lignin-diverted reducing agents has not been sufficiently explored. In this study, laccase and tyrosinase were initially investigated and their optimal conditions and impressive thermal stability were revealed, indicating their potential synergistic abilities with LPMO in lignocellulose biodegradation. When utilizing gallic acid as a reducing agent, the activities of LPMOs were increased by over 10%, which was particularly evident in mutant-type LPMOs after the addition of polyphenol oxidases. In particular, the combination of tyrosinase with either 4-hydroxy-3-methoxyphenylacetone or p-coumaric acid was shown to enhance the efficacy of LPMOs. Furthermore, the highest activity levels of wild-type LPMOs were observed with the addition of laccase and 3-methylcatechol. The similarities between wild and mutant LPMOs regarding their activities in lignin-diverted phenolic compounds and reducing agents are almost identical, suggesting that the single-residue mutation of LPMO does not have a detrimental effect on its performance. Above all, this study indicates that understanding the performance of both wild and mutant types of LPMOs in the presence of polyphenol oxidases and various reducing agents constitutes a key link in the industrialization of the multi-enzyme degradation of lignocellulose.
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  • 文章类型: Journal Article
    染料对水生环境和人类健康构成巨大威胁。基于Fe0的类Fenton体系已广泛用于降解有机染料。然而,降解性和可回收性的调节仍不清楚。在这项研究中,罗丹明B(RhB)作为模型污染物,选择盐酸羟胺作为RA,自然光催化系统运行稳定。RA,作为性能增强代理,首次报道了基于微/纳米零价铁@生物炭(m/nZVI@BC)的SPC-RA系统。通过一步碳热法制备了载体尺寸分级的m/nZVI@BC。因此,RA与SPC协同互动,反应时间从15分钟减少到4分钟。在0.010gm/nZVI@BC介导的SPC-RA系统中,成功降解了95%以上的RhB(100mg·L-1,1041.667mg·g-1)。通过5次重复应用,最大降解能力仍可超过1g·g-1。同时,降解性的损失,由SPC浓度减半引起的,可以通过RA剂量测量来补偿。整个降解过程主要由自由基(•OH>1O2>•O2->•CO3-)主导。活性氧化物质(ROSs)主要由生物炭(BC)的α-Fe0,Fe3C和N位点激发。光及BC载体专用轻微影响。这些发现揭示了催化材料的活性和可回收性调节,符合绿色化学和清洁生产的原则。这项研究展示了一种有效管理固体废物处理的新方法,废弃生物质的再利用,含染料废水的深度处理,水生环境中的污染控制。
    Dyes pose great threats to the aquatic environment and human health. Fe0-based Fenton-like systems have been widely employed for the degradation of organic dyes. However, the regulation of degradability and recyclability was still unclear. In this study, Rhodamine B (RhB) was served as the model pollutant, hydroxylamine hydrochloride was selected as the RA, the natural photocatalysis system demonstrated stable operation. RA, as performance enhancement agent, was firstly reported in micro/nano-Zero-Valent Iron@Biochar (m/nZVI@BC) based SPC-RA system. Carrier size-fractionated m/nZVI@BC was fabricated by one-step carbothermal method. As a result, RA synergistically interacted with SPC, and the reaction time reduced from 15 min to 4 min. In the 0.010 g m/nZVI@BC-mediated SPC-RA system, over 95% of RhB (100 mg·L-1, 1041.667 mg·g-1) was successfully degraded. The maximum degradation ability could still exceed 1g·g-1 via 5 times repeated applications. Meanwhile, the loss of degradability, caused by halving SPC concentration could be compensated by RA dosage measurement. The entire degradation process was predominantly dominated by free radicals (•OH> 1O2> •O2-> •CO3-). Reactive oxidizing species (ROSs) were primarily excited by α-Fe0, Fe3C and N sites of biochar (BC). Light and BC carrier dedicated slight influence. These discoveries shed a light on the activity and recyclability regulation of catalytic material, aligning with the principles of green chemistry and cleaner production. This study demonstrates a novel approach to efficient management of solid waste disposal, reuse of waste biomass, advanced treatment of dye-containing wastewater, pollution control in aquatic environments.
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  • 文章类型: Journal Article
    肽的形态转化自组装允许操纵纳米结构的性能,从而促进生物材料的发展。在生物微环境下加速形态转变过程对于有效实现生命系统中的定制功能很重要。在这里,我们报告了氧化还原调节的原位种子诱导的肽的组装,通过设计两种共组装的BALA-两亲物作为抗氧化还原种子和氧化还原响应组装单体,分别。这两种肽都能够独立组装成纳米带,而种子单体表现出更强的组装倾向。氧化还原响应性单体经历从明确定义的纳米带到纳米颗粒的形态转变。动力学研究验证了组装的惰性单体作为种子在加速氧化还原响应性单体的组装中的作用。将氧化剂和还原剂交替添加到共组装的单体中促进了由原位形成的种子促进的肽的氧化还原调节的组装。还可以通过在具有高水平还原剂的癌细胞中原位形成的种子来加速肽的还原诱导的组装。我们的发现表明,通过精确操纵共组装单体的组装倾向,可以实现原位种子诱导的肽组装。将种子诱导组装的快速组装动力学与生物微环境中常见的氧化还原剂相结合,这种策略可能为在生命系统中开发生物医学材料提供了一种新方法。
    Morphology-transformational self-assembly of peptides allows for manipulation of the performance of nanostructures and thereby advancing the development of biomaterials. Acceleration of the morphological transformation process under a biological microenvironment is important to efficiently implement the tailored functions in living systems. Herein, we report redox-regulated in situ seed-induced assembly of peptides via design of two co-assembled bola-amphiphiles serving as a redox-resistant seed and a redox-responsive assembly monomer, respectively. Both of the peptides are able to independently assemble into nanoribbons, while the seed monomer exhibits stronger assembling propensity. The redox-responsive monomer undergoes morphological transformation from well-defined nanoribbons to nanoparticles. Kinetics studies validate the role of the assembled inert monomer as the seeds in accelerating the assembly of the redox-responsive monomer. Alternative addition of oxidants and reductants into the co-assembled monomers promotes the redox-regulated assembly of the peptides facilitated by the in situ-formed seeds. The reduction-induced assembly of the peptide could also be accelerated by in situ-formed seeds in cancer cells with a high level of reductants. Our findings demonstrate that through precisely manipulating the assembling propensity of co-assembled monomers, the in situ seed-induced assembly of peptides could be achieved. Combining the rapid assembly kinetics of the seed-induced assembly with the common presence of redox agents in a biological microenvironment, this strategy potentially offers a new method for developing biomedical materials in living systems.
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  • 文章类型: Journal Article
    二聚体前药纳米组装体(DPNA)是提高化疗药物效率和安全性的有希望的策略。DPNA中三硫键(-SSS-)的成功使多硫键成为值得关注的焦点。这里,我们探讨了四硫化物键(-SSSS-)在构建高级DPNA中的综合作用。与三硫化物和二硫键相比,四硫化物键赋予DPNA最高的自组装稳定性,延长血液循环,和高肿瘤积累。值得注意的是,四硫化物键的超高还原反应性使DPNA成为高度选择性的“肿瘤炸弹”,可被肿瘤细胞中的内源性还原剂点燃。此外,我们提出了一种“火上浇油”的策略,通过补充外源性还原剂来增强肿瘤部位的还原性应激,在选择性肿瘤抑制方面取得了相当大的进展。这项工作阐明了四硫化物键在建立智能DPNA中的关键作用,除了组合方法之外,将DPNA推向有效癌症治疗的新高度。
    Dimeric prodrug nanoassemblies (DPNAs) stand out as promising strategies for improving the efficiency and safety of chemotherapeutic drugs. The success of trisulfide bonds (-SSS-) in DPNAs makes polysulfide bonds a worthwhile focus. Here, we explore the comprehensive role of tetrasulfide bonds (-SSSS-) in constructing superior DPNAs. Compared to trisulfide and disulfide bonds, tetrasulfide bonds endow DPNAs with superlative self-assembly stability, prolonged blood circulation, and high tumor accumulation. Notably, the ultra-high reduction responsivity of tetrasulfide bonds make DPNAs a highly selective \"tumor bomb\" that can be ignited by endogenous reducing agents in tumor cells. Furthermore, we present an \"add fuel to the flames\" strategy to intensify the reductive stress at tumor sites by replenishing exogenous reducing agents, making considerable progress in selective tumor inhibition. This work elucidates the crucial role of tetrasulfide bonds in establishing intelligent DPNAs, alongside the combination methodology, propelling DPNAs to new heights in potent cancer therapy.
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  • 文章类型: Journal Article
    反刍动物对全球粮食安全至关重要,但这些是温室气体甲烷的主要来源。甲烷产率受分子氢(H2)循环控制,它是在碳水化合物发酵过程中产生的,被产甲烷消耗,产乙酸,和呼吸道微生物。然而,我们缺乏对H2代谢的介质和途径的全面了解,以及在具有不同甲烷排放表型的反刍动物之间,H2代谢是如何变化的.这里,我们用宏基因组,metaranscriptomic,代谢组学,和生化方法,以比较低甲烷排放的荷斯坦和高甲烷排放的泽西岛奶牛之间的H2循环和还原剂处置途径。荷斯坦瘤胃微生物群有更大的还原剂处理能力,通过电子转移进行氨基酸合成和丙酸生产,由谷氨酸合酶和乳酸脱氢酶等酶催化,并表达吸收[NiFe]-氢化酶以使用H2支持硫酸盐和硝酸盐呼吸,导致H2循环与较少排出的甲烷的增强耦合。泽西岛瘤胃微生物组通过梭菌属编码的发酵氢化酶催化的H2产生具有更大比例的还原剂处置,H2主要通过产甲烷[NiFe]-氢化酶的产甲烷和通过[FeFe]-氢化酶的产乙酸吸收,导致甲烷和乙酸盐产量增加。通过对微生物组活性的两个体外测量,进一步支持了减少甲烷生成的代谢物合成的电子掺入的增强。代谢物,以及低甲烷排放和高甲烷排放的肉牛和绵羊的公共全球微生物组数据。总的来说,这项研究强调了促进替代H2消耗和还原剂处置途径对合成宿主有益代谢物和减少反刍动物甲烷产生的重要性。
    Ruminants are essential for global food security, but these are major sources of the greenhouse gas methane. Methane yield is controlled by the cycling of molecular hydrogen (H2), which is produced during carbohydrate fermentation and is consumed by methanogenic, acetogenic, and respiratory microorganisms. However, we lack a holistic understanding of the mediators and pathways of H2 metabolism and how this varies between ruminants with different methane-emitting phenotypes. Here, we used metagenomic, metatranscriptomic, metabolomics, and biochemical approaches to compare H2 cycling and reductant disposal pathways between low-methane-emitting Holstein and high-methane-emitting Jersey dairy cattle. The Holstein rumen microbiota had a greater capacity for reductant disposal via electron transfer for amino acid synthesis and propionate production, catalyzed by enzymes such as glutamate synthase and lactate dehydrogenase, and expressed uptake [NiFe]-hydrogenases to use H2 to support sulfate and nitrate respiration, leading to enhanced coupling of H2 cycling with less expelled methane. The Jersey rumen microbiome had a greater proportion of reductant disposal via H2 production catalyzed by fermentative hydrogenases encoded by Clostridia, with H2 mainly taken up through methanogenesis via methanogenic [NiFe]-hydrogenases and acetogenesis via [FeFe]-hydrogenases, resulting in enhanced methane and acetate production. Such enhancement of electron incorporation for metabolite synthesis with reduced methanogenesis was further supported by two in vitro measurements of microbiome activities, metabolites, and public global microbiome data of low- and high-methane-emitting beef cattle and sheep. Overall, this study highlights the importance of promoting alternative H2 consumption and reductant disposal pathways for synthesizing host-beneficial metabolites and reducing methane production in ruminants.
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  • 文章类型: Journal Article
    背景:L-苯丙氨酸是一种具有多种有前途的应用的必需氨基酸。在野生菌株中从葡萄糖合成L-苯丙氨酸的微生物途径涉及冗长的步骤和严格的反馈调节,这限制了产量。寻找其他候选人很有吸引力,该方法可用于建立一个简洁且经济有效的L-苯丙氨酸生产途径。这里,我们开发了一种人工生物转化方法,从廉价的芳香族前体(苯甲醛或苯甲醇)合成L-苯丙氨酸。特别是,这项工作打开了在辅因子自给自足系统中从苯甲醇生产L-苯丙氨酸的可能性,而无需添加任何还原剂。
    结果:工程化的L-苯丙氨酸生物合成途径包括两个模块:在第一个模块中,芳香前体和甘氨酸转化为苯丙酮酸,L-苯丙氨酸的关键前体.高活性酶组合是天然苏氨酸醛缩酶LtaEP。p和苏氨酸脱水酶A8HB。t,可以产生滴度为4.3g/L的丙酮酸苯酯。过表达基因ridA可使丙酮酸产量进一步提高16.3%,达到5g/L第二个模块催化苯丙酮酸合成L-苯丙氨酸,通过共表达PheDH和FDHV120S,丙酮酸的转化率高达93%。然后,含有这两个模块的工程大肠杆菌可以从苯甲醛中生产L-苯丙氨酸,转化率为69%。最后,我们扩展了芳香前体,从苯甲醇生产L-苯丙氨酸,首先构建了辅因子自给自足的生物合成途径,在没有任何额外还原剂如甲酸盐的情况下合成L-苯丙氨酸。
    结论:已经设计和构建了系统的生物转化过程,这可以为从低成本起始材料芳香族前体生产高价值L-苯丙氨酸提供潜在的生物基策略。
    BACKGROUND: L-phenylalanine is an essential amino acid with various promising applications. The microbial pathway for L-phenylalanine synthesis from glucose in wild strains involves lengthy steps and stringent feedback regulation that limits the production yield. It is attractive to find other candidates, which could be used to establish a succinct and cost-effective pathway for L-phenylalanine production. Here, we developed an artificial bioconversion process to synthesize L-phenylalanine from inexpensive aromatic precursors (benzaldehyde or benzyl alcohol). In particular, this work opens the possibility of L-phenylalanine production from benzyl alcohol in a cofactor self-sufficient system without any addition of reductant.
    RESULTS: The engineered L-phenylalanine biosynthesis pathway comprises two modules: in the first module, aromatic precursors and glycine were converted into phenylpyruvate, the key precursor for L-phenylalanine. The highly active enzyme combination was natural threonine aldolase LtaEP.p and threonine dehydratase A8HB.t, which could produce phenylpyruvate in a titer of 4.3 g/L. Overexpression of gene ridA could further increase phenylpyruvate production by 16.3%, reaching up to 5 g/L. The second module catalyzed phenylpyruvate to L-phenylalanine, and the conversion rate of phenylpyruvate was up to 93% by co-expressing PheDH and FDHV120S. Then, the engineered E. coli containing these two modules could produce L-phenylalanine from benzaldehyde with a conversion rate of 69%. Finally, we expanded the aromatic precursors to produce L-phenylalanine from benzyl alcohol, and firstly constructed the cofactor self-sufficient biosynthetic pathway to synthesize L-phenylalanine without any additional reductant such as formate.
    CONCLUSIONS: Systematical bioconversion processes have been designed and constructed, which could provide a potential bio-based strategy for the production of high-value L-phenylalanine from low-cost starting materials aromatic precursors.
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  • 文章类型: Journal Article
    微生物介导的NO3--N和Cr(VI)减少被认为是一种生态友好且具有成本效益的修复策略。硫化铁矿物,作为天然无机电子供体,对NO3--N和Cr(VI)的转变有很大的影响,分别。然而,关于在涉及硫化铁矿物的兼养生物滤池中同时去除硝酸盐和铬的性能以及潜在机理知之甚少。这项研究表明,NO3--N和Cr(VI)的去除效率稳定在62±8%和56±10%。它们中的大多数在生物过滤器的0-100毫米区域被消除。Cr(VI)通过微生物和化学途径还原成不溶性Cr(III),生物膜和黄铁矿颗粒的SEM-EDS形貌和XPS光谱证实了这一点。SO42-是黄铁矿氧化的主要副产物;然而,细菌SO42-还原同步发生,TOC和SO42-浓度的变化证明了这一点。这些结果表明,NO3--N/Cr(VI)/SO42-/DO(电子受体)与黄铁矿/有机物(电子供体)之间存在复杂而交织的生化关系。进一步的调查表明,微生物样品S1中最大的生物量和最大的反硝化细菌相对丰度都很好地解释了为什么在0-100毫米区域去除污染物。各种反硝虫,如Pseudoxanthomona,Acidovorax,并丰富了单纯的丝皮拉,这可能负责NO3--N和Cr(VI)的去除。我们的发现促进了对黄铁矿混合营养系统中同时去除硝酸盐和铬的理解,并促进了硝酸盐和铬修复的新策略开发。
    Microbially mediated NO3--N and Cr(VI) reduction is being recognized as an eco-friendly and cost-effective remediation strategy. Iron sulfide mineral, as a natural inorganic electron donor, has a strong influence on NO3--N and Cr(VI) transformation, respectively. However, little is known about the simultaneous nitrate and chromium removal performance and underlying mechanism in an iron sulfide mineral-involved mixotrophic biofilter. This study demonstrated that the NO3--N and Cr(VI) removal efficiencies were stable at 62 ± 8% and 56 ± 10%, and most of them were eliminated in the 0-100-mm region of the biofilter. Cr(VI) was reduced to insoluble Cr(III) via microbial and chemical pathways, which was confirmed by the SEM-EDS morphology and the XPS spectra of biofilm and pyrite particles. SO42- was as a main byproduct of pyrite oxidation; however, the bacterial SO42- reduction synchronously occurred, evidenced by the variations of TOC and SO42- concentrations. These results suggested that there were complicated and intertwined biochemical relations between NO3--N/Cr(VI)/SO42-/DO (electron acceptors) and pyrite/organics (electron donors). Further investigation indicated that both the maximal biomass and greatest denitrifiers\' relative abundances in microbial sample S1 well explained why the pollutants were removed in the 0-100-mm region. A variety of denitrifiers such as Pseudoxanthomona, Acidovorax, and Simplicispira were enriched, which probably were responsible for both NO3--N and Cr(VI) removal. Our findings advance the understanding of simultaneous nitrate and chromium removal in pyrite-involved mixotrophic systems and facilitate the new strategy development for nitrate and chromium remediation.
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  • 文章类型: Journal Article
    颗粒甲烷单加氧酶(pMMO)在催化甲烷转化为甲醇中起着至关重要的作用,构成嗜甲烷细菌中C1代谢途径的初始步骤。然而,膜结合PMMO的结构和催化机理,特别是铜的价态和甲烷氧化的真正活性位点,仍然难以捉摸。基于最近表征的膜结合pMMO的结构,进行了广泛的计算研究来解决这些长期存在的问题。将量子力学/分子力学(QM/MM)分子动力学(MD)模拟结构与低温EM数据进行比较的综合分析表明,CuC和CuD位点在膜环境中都倾向于停留在Cu(I)价态。此外,在CuC和CuD位点同时存在Cu(I)导致它们之间的配体结合腔的显着减少,这使得它不太可能容纳还原剂分子,例如杜氢醌(DQH2)。随后的QM/MM计算表明,在氧活化中,CuD(I)位点比CuC(I)位点更具反应性。在形成H2O2和生成Cu(II)-O·-物种的过程中。最后,我们的模拟表明,天然还原剂泛醇(CoQH2)在CuD(I)位点而不是在CuC(I)位点呈现生产性结合构象。这提供了膜结合的pMMOs的真正活性位点可能是CuD而不是CuC的证据。这些发现阐明了pMMO的催化机理,并强调了膜环境在调节pMMO内铜中心的配位结构和活性方面的关键作用。
    Particulate methane monooxygenase (pMMO) plays a critical role in catalyzing the conversion of methane to methanol, constituting the initial step in the C1 metabolic pathway within methanotrophic bacteria. However, the membrane-bound pMMO\'s structure and catalytic mechanism, notably the copper\'s valence state and genuine active site for methane oxidation, have remained elusive. Based on the recently characterized structure of membrane-bound pMMO, extensive computational studies were conducted to address these long-standing issues. A comprehensive analysis comparing the quantum mechanics/molecular mechanics (QM/MM) molecular dynamics (MD) simulated structures with cryo-EM data indicates that both the CuC and CuD sites tend to stay in the Cu(I) valence state within the membrane environment. Additionally, the concurrent presence of Cu(I) at both CuC and CuD sites leads to the significant reduction of the ligand-binding cavity situated between them, making it less likely to accommodate a reductant molecule such as durohydroquinone (DQH2). Subsequent QM/MM calculations reveal that the CuD(I) site is more reactive than the CuC(I) site in oxygen activation, en route to H2O2 formation and the generation of Cu(II)-O•- species. Finally, our simulations demonstrate that the natural reductant ubiquinol (CoQH2) assumes a productive binding conformation at the CuD(I) site but not at the CuC(I) site. This provides evidence that the true active site of membrane-bound pMMOs may be CuD rather than CuC. These findings clarify pMMO\'s catalytic mechanism and emphasize the membrane environment\'s pivotal role in modulating the coordination structure and the activity of copper centers within pMMO.
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