Hymenoptera

膜翅目
  • 文章类型: Journal Article
    DiomorusaiolomorphiKamijo(膜翅目:Torymidae)是胆囊制造商AiolomorphusrhopaloidesWalker(膜翅目:Eurytomidae)的一种动物。它们具有重要的经济意义,主要生活在竹林中。到目前为止,对于Torymidae家族,仅发表了四个支架水平的基因组。在这项研究中,我们在染色体水平上提出了一种高质量的D.aiolomorphi基因组组装,通过集成纳米孔(ONT)长读,Illumina配对末端DNA短读,和高穿透染色体构象捕获(Hi-C)测序方法。最终组装的基因组大小为1,084.56Mb,将1,083.41Mb(99.89%)分配给五个假染色体。脚手架N50长度达到224.87Mb,完整的基准通用单拷贝正交体(BUSCO)得分为97.3%。基因组包含762.12Mb的重复元件,占总基因组大小的70.27%。共预测了18011个蛋白质编码基因,功能注释了17829个基因。本研究中提出的D.aiolomorphi的高质量基因组组装将为未来的类寄生虫黄蜂研究提供宝贵的基因组资源。这项研究的结果也可能有助于制定竹林害虫管理的生物防治策略,加强生态平衡和经济可持续性。
    Diomorus aiolomorphi Kamijo (Hymenoptera: Torymidae) is an inquiline of gall maker Aiolomorphus rhopaloides Walker (Hymenoptera: Eurytomidae). They are of significant economic significance and predominantly inhabit bamboo forest. So far, only four scaffold-level genomes have been published for the family Torymidae. In this study, we present a high-quality genome assembly of D. aiolomorphi at the chromosome level, achieved through the integration of Nanopore (ONT) long-read, Illumina pair-end DNA short-read, and High-through Chromosome Conformation Capture (Hi-C) sequencing methods. The final assembly was 1,084.56 Mb in genome size, with 1,083.41 Mb (99.89%) assigned to five pseudochromosomes. The scaffold N50 length reached 224.87 Mb, and the complete Benchmarking Universal Single-Copy Orthologs (BUSCO) score was 97.3%. The genome contained 762.12 Mb of repetitive elements, accounting for 70.27% of the total genome size. A total of 18,011 protein-coding genes were predicted, with 17,829 genes being functionally annotated. The high-quality genome assembly of D. aiolomorphi presented in this study will serve as a valuable genomic resource for future research on parasitoid wasps. The results of this study may also contribute to the development of biological control strategies for pest management in bamboo forests, enhancing ecological balance and economic sustainability.
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  • 文章类型: Journal Article
    背景:腺苷到肌苷(A到I)RNA编辑是在RNA中引入A到G变异的共/转录后修饰。关于RNA编辑的灵活性是否发挥蛋白质组多样化作用有广泛的讨论,或者它就像硬连线突变一样纠正基因组等位基因。Eusocial昆虫进化出具有相同基因组的表型分化个体的能力,表明参与表观遗传/转录组调控。
    方法:我们获得了104只膜翅目昆虫的基因组和代表性物种的转录组。进行比较基因组分析以解析Adar基因中调节性Ile>Met自动重新编码位点的进化轨迹。
    结果:在基因组水平,编辑前的Ile密码子在包含所有社会性膜翅目昆虫的节点上是保守的。在RNA水平上,编辑事件在代表性物种中得到证实,并显示出相当大的条件特异性。与随机期望相比,可编辑的Ile密码子避免了对Met或不可编辑的Ile密码子的基因组替换,但不能避免其他无关氨基酸的突变。
    结论:选择性地保持了膜翅目中Adar自动重新编码位点的灵活性,支持灵活的RNA编辑假说。我们提出了一个新的角度来看待RNA编辑的适应性,提供了另一层来解释eusocial昆虫的巨大表型可塑性。
    BACKGROUND: Adenosine-to-inosine (A-to-I) RNA editing is a co-/post-transcriptional modification introducing A-to-G variations in RNAs. There is extensive discussion on whether the flexibility of RNA editing exerts a proteomic diversification role, or it just acts like hardwired mutations to correct the genomic allele. Eusocial insects evolved the ability to generate phenotypically differentiated individuals with the same genome, indicating the involvement of epigenetic/transcriptomic regulation.
    METHODS: We obtained the genomes of 104 Hymenoptera insects and the transcriptomes of representative species. Comparative genomic analysis was performed to parse the evolutionary trajectory of a regulatory Ile > Met auto-recoding site in Adar gene.
    RESULTS: At genome level, the pre-editing Ile codon is conserved across a node containing all eusocial hymenopterans. At RNA level, the editing events are confirmed in representative species and shows considerable condition-specificity. Compared to random expectation, the editable Ile codon avoids genomic substitutions to Met or to uneditable Ile codons, but does not avoid mutations to other unrelated amino acids.
    CONCLUSIONS: The flexibility of Adar auto-recoding site in Hymenoptera is selectively maintained, supporting the flexible RNA editing hypothesis. We proposed a new angle to view the adaptation of RNA editing, providing another layer to explain the great phenotypical plasticity of eusocial insects.
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  • 文章类型: Journal Article
    系统发育方法最近有助于阐明各种昆虫关系,但是仍然缺乏对锯蝇和木黄蜂之间关系的大规模综合分析。这里,我们使用从代表所有主要谱系的385个物种收集的354个UCE基因座的大型数据集来推断这些膜翅目群体的关系和长期生物地理历史。早期膜翅目在三叠纪早期249Ma开始多样化,并遍布整个古代超大陆Pangea。我们将Xyeloidea作为单系姐妹组恢复为其他膜翅目和Pamphilioidea作为Unicalcarida的姐妹。在不同的Tendredinidae家族中,我们在分类学和地理上扩展的分类单元采样强调了几个传统定义的亚科的非单系。此外,支持最近将Athalia和相关属从Tendredinidae中删除为单独的Athaliidae。该群体的深层历史生物地理学的特征是北部(Laurasia)和南部(Gondwana)古大陆之间的独立分散和重新定居。这些陆块的分裂导致了冈瓦南几个血统的古代传承,而北半球的互换一直持续到最近。很少研究的非洲锯蝇动物群同样是不同群体的混合,具有不同的殖民途径。我们的结果揭示了早期膜翅目昆虫和其他古代昆虫群的进化和生物地理学的有趣相似之处。
    Phylogenomic approaches have recently helped elucidate various insect relationships, but large-scale comprehensive analyses on relationships within sawflies and woodwasps are still lacking. Here, we infer the relationships and long-term biogeographic history of these hymenopteran groups using a large dataset of 354 UCE loci collected from 385 species that represent all major lineages. Early Hymenoptera started diversifying during the Early Triassic ∼249 Ma and spread all over the ancient supercontinent Pangaea. We recovered Xyeloidea as a monophyletic sister group to other Hymenoptera and Pamphilioidea as sister to Unicalcarida. Within the diverse family Tenthredinidae, our taxonomically and geographically expanded taxon sampling highlights the non-monophyly of several traditionally defined subfamilies. In addition, the recent removal of Athalia and related genera from the Tenthredinidae into the separate family Athaliidae is supported. The deep historical biogeography of the group is characterised by independent dispersals and re-colonisations between the northern (Laurasia) and southern (Gondwana) palaeocontinents. The breakup of these landmasses led to ancient vicariance in several Gondwanan lineages, while interchange across the Northern Hemisphere has continued until the Recent. The little-studied African sawfly fauna is likewise a diverse mixture of groups with varying routes of colonization. Our results reveal interesting parallels in the evolution and biogeography of early hymenopterans and other ancient insect groups.
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  • 文章类型: Journal Article
    作为昆虫不可或缺的一部分,肠道共生菌在昆虫的生长发育和适应性中起着至关重要的作用。石竹,遗留植物的主要害虫,对棘刺种群的发展构成严重威胁。在本研究中,16SrDNA和内部转录间隔区高通量测序技术用于分析肠道微生物的结构和昆虫在两种不同植物上取食的多样性,以及夏枯草的肠道微生物之间的相似性。还基于测序数据比较了叶片内生菌的优势细菌。结果表明,变形杆菌,Firmicutes,放线菌是肠道细菌的优势门,子囊菌是肠道真菌的优势门。异型根瘤菌-新根瘤菌-副根瘤菌-根瘤菌,甲基细菌-甲基细菌,肠球菌是以两种植物为食的蓝藻肠道中的优势属,两组的相对丰度差异显著。念珠菌是两组中常见的肠道真菌的优势属,两组之间的丰度没有显着差异。这表明,与夏枯草的肠道真菌相比,肠道细菌的丰度受食物的影响很大。刺五加叶中微生物与昆虫肠道之间的共同核心微生物群表明两者之间存在微生物交换。网络相关图显示,以Gynosphaerametteniana为食的蓝藻肠道微生物之间的关系更为密切,这可以帮助宿主更好地应对不利的外部环境。本研究为蓝藻的适应机制研究提供了理论依据,为蓝藻的有效防控提供了新的方向。
    As an indispensable part of insects, intestinal symbiotic bacteria play a vital role in the growth and development of insects and their adaptability. Rhoptroceros cyatheae, the main pest of the relict plant Alsophila spinulosa, poses a serious threat to the development of the A. spinulosa population. In the present study, 16S rDNA and internal transcribed spacer high-throughput sequencing techniques were used to analyze the structure of intestinal microbes and the diversity of the insect feeding on two different plants, as well as the similarities between the intestinal microorganisms of R. cyatheae. The dominant bacteria of leaf endophytes were also compared based on the sequencing data. The results showed that Proteobacteria, Firmicutes, and Actinobacteria were the dominant phyla of intestinal bacteria, and Ascomycota was the dominant phylum of intestinal fungi. Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium, Methylobacterium-Methylorubrum, and Enterococcus were the dominant genera in the intestine of R. cyatheae feeding on two plants, and the relative abundance was significantly different between the two groups. Candida was the common dominant genus of intestinal fungi in the two groups, and no significant difference was observed in its abundance between the two groups. This showed that compared with the intestinal fungi of R. cyatheae, the abundance of the intestinal bacteria was greatly affected by food. The common core microbiota between the microorganisms in A. spinulosa leaves and the insect gut indicated the presence of a microbial exchange between the two. The network correlation diagram showed that the gut microbes of R. cyatheae feeding on Gymnosphaera metteniana were more closely related to each other, which could help the host to better cope with the adverse external environment. This study provides a theoretical basis for the adaptation mechanism of R. cyatheae and a new direction for the effective prevention and control of R. cyatheae.
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  • 文章类型: Journal Article
    Leptogenys是蚂蚁亚科Ponerinae中最多样化的属,广泛分布于世界热带和亚热带地区。来自东方领域的40多个物种显示出广泛的生态,尽管他们的生活史特征仍然知之甚少,新物种经常被发现。这里,香港特区属的动物区系回顾,中国南方提供。总共记录了9种,一个新物种,LeptogenysgrohliHamer,Lee&Guénard,sp.11月。描述。生态和生物地理信息,包括关于两个物种的生殖模式的新信息,1900年和L.rufidaZhou等人。,2012年描述还提供了邻近广东省内其中五种物种的其他记录。最后,展示了香港已知物种的插图钥匙,以及每个物种分布的注释,生态学,和行为。还提供了中国大陆和台湾Leptogenys物种的最新省级分布清单。
    Leptogenys is the most diverse genus of the ant subfamily Ponerinae and is widely distributed across the world\'s tropical and subtropical regions. More than 40 species are known from the Oriental realm displaying a wide range of ecologies, although their life history traits remain poorly understood, and new species are frequently discovered. Here, a faunal review of the genus from Hong Kong SAR, southern China is provided. A total of nine species are recorded, with one new species, Leptogenysgrohli Hamer, Lee & Guénard, sp. nov. described. Ecological and biogeographic information, including new information on reproductive modes for two species are provided with the ergatoids of L.binghamii Forel, 1900 and L.rufidaZhou et al., 2012 described. Additional records for five of these species within the neighbouring province of Guangdong are also provided. Finally, an illustrated key to species known from Hong Kong is presented, as well as notes on each species\' distribution, ecology, and behaviour. An updated provincial distributional checklist of the Leptogenys species of Mainland China and Taiwan is also supplied.
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  • 文章类型: Journal Article
    Epyrinae是Bethyialae的第二大亚科,也是化石记录中最多样化的亚科。然而,尽管在白垩纪期间已知9个bthirlid亚科中的6个(压缩化石或琥珀色化石),在下始新世之前,epyrinae是迄今未知的。在这一贡献中,我们报告发现了这个群体中最古老的成员,根据克钦邦早期塞诺马尼亚琥珀的女性标本,缅甸。我们描述并说明了一个新的属和物种,Hukawngepyrissetosusgen。等sp.11月。将新属与其他epyrine属进行比较,其特征在于亚科中未知的独特字符组合。Hukawngepyrissetosusgen。等sp.11月。在前脉的配置中特别独特,具有完整的2r-rs和Rs静脉,朝向前翼缘弯曲,以及三个近端和三个远端海马的存在。Epyrinae属的关键包括新建立的属。
    The Epyrinae are the second largest subfamily of Bethylidae and the most diverse in the fossil record. However, although six of the nine bethylid subfamilies are known during the Cretaceous (either as compression or amber fossils), the Epyrinae were hitherto unknown before the lower Eocene. In this contribution, we report the discovery of the oldest member of this group, based on a female specimen from the early Cenomanian amber of Kachin, Myanmar. We describe and illustrate a new genus and species, Hukawngepyris setosus gen. et sp. nov. The new genus is compared with the other epyrine genera and characterized by a unique combination of characters not known in the subfamily. Hukawngepyris setosus gen. et sp. nov. is especially unique in the configuration of the forewing venation, with a complete 2r-rs&Rs vein, curved towards the anterior wing margin, and the presence of three proximal and three distal hamuli. The key to the genera of Epyrinae is accommodated to include the newly erected genus.
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    文章类型: Journal Article
    膜翅目是物种最丰富的昆虫之一,描述了超过150,000种现存物种。与推定的昆虫祖先组织相比,许多膜翅目昆虫具有非常不同的线粒体基因组(有丝分裂基因组)组织。在这项研究中,我们按膜翅目顺序对代表的18个有丝分裂基因组进行了测序,以增加分类学采样。共有475个物种用于系统发育分析,包括18个新的有丝分裂基因组和457个现有的有丝分裂基因组。使用站点异构模型,贝叶斯从氨基酸数据中得出的推论比最大似然分析和基于合并的物种分析更能解决膜翅目之间的关系。不支持Symphyta的单体。Xyeloidea是膜翅目中最早的分支。Orussoidea与Apocrita密切相关。在Apocrita,Parasitoida是非单系的。大多数Parasitoida超家族的单系得到了大力支持。贝叶斯分析支持Proctotrupomorpha进化枝。当不考虑Ampulexcompressa时,Apoidea是单系的。发现Vespoidea和Chrysidoidea的超家族是非单系的。线粒体基因顺序的比较显示,在具有类寄生虫生活方式的谱系中,基因重排的频率更高。在Chalcidoidea中尤为突出。基因重排程度在Cynipoidea和Ichneumonoidea的特定分类群中排名第二。
    The order Hymenoptera is one of the most species-rich insect orders, with more than 150,000 described extant species. Many hymenopteran insects have very different mitochondrial genome (mitogenome) organizations compared to the putative ancestral organization of insects. In this study, we sequenced 18 mitogenomes of representatives in the order Hymenoptera to increase taxonomic sampling. A total of 475 species were used in phylogenetic analyses, including 18 new mitogenomes and 457 existing mitogenomes. Using a site-heterogeneous model, Bayesian\'s inference from amino acid data yielded more resolved relationships among Hymenoptera than maximum-likelihood analysis and coalescent-based species analyses. The monophyly of Symphyta was not supported. The Xyeloidea was the earliest branching clade in the Hymenoptera. The Orussoidea was closely related to Apocrita. Within Apocrita, the Parasitoida was non-monophyletic. The monophyly of most Parasitoida superfamilies received strong support. The Proctotrupomorpha clade was supported in Bayesian\'s analysis. The Apoidea was monophyletic when excluding Ampulex compressa from consideration. The superfamilies Vespoidea and Chrysidoidea were found to be non-monophyletic. Comparisons of mitochondrial gene order revealed a higher frequency of gene rearrangement among lineages with a parasitoid lifestyle, particularly prominent in Chalcidoidea. The degree of gene rearrangement ranked second in specific taxa of Cynipoidea and Ichneumonoidea.
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  • 文章类型: Journal Article
    昆虫严重依赖嗅觉系统获取食物,交配,和捕食者逃避。然而,Apiscerana与种姓相关的嗅觉差异,一种eusocial昆虫,仍然不清楚。探索嗅觉系统的外围和主要中心与种姓二态性的联系。对不同种姓进行了气味受体(ORs)和触角叶(ALs)结构的转录组和免疫组织化学研究。通过转录切除,我们在皇后和工人身上发现了更多的嗅觉受体基因,通过RT-qPCR进一步验证,表明种姓二态。同时,AL结构,包括体积,表面积,和肾小球的数量,表现出与种姓二态的密切联系。特别是,无人机有更多的大肾小球可能用于信息素识别。有趣的是,我们发现OR数和肾小球比率接近1:1。此外,ORs的表达分布模式与肾小球体积的分布非常相似。我们的结果表明,在A.cerana的不同种姓中,周围嗅觉系统和AL都存在并发可塑性,强调嗅觉系统在昆虫分工中的作用。
    Insects heavily rely on the olfactory system for food, mating, and predator evasion. However, the caste-related olfactory differences in Apis cerana, a eusocial insect, remain unclear. To explore the peripheral and primary center of the olfactory system link to the caste dimorphism in A. cerana, transcriptome and immunohistochemistry studies on the odorant receptors (ORs) and architecture of antennal lobes (ALs) were performed on different castes. Through transcriptomesis, we found more olfactory receptor genes in queens and workers than in drones, which were further validated by RT-qPCR, indicating caste dimorphism. Meanwhile, ALs structure, including volume, surface area, and the number of glomeruli, demonstrated a close association with caste dimorphism. Particularly, drones had more macroglomeruli possibly for pheromone recognition. Interestingly, we found that the number of ORs and glomeruli ratio was nearly 1:1. Also, the ORs expression distribution pattern was very similar to the distribution of glomeruli volume. Our results suggest the existence of concurrent plasticity in both the peripheral olfactory system and ALs among different castes of A. cerana, highlighting the role of the olfactory system in labor division in insects.
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  • 文章类型: Journal Article
    膜翅目对人类具有重要意义,特别是在热带和亚热带地区,由于其作为野生和栽培开花植物的传粉者的作用,破坏性昆虫和蜂蜜生产者的寄生虫。尽管有这种重要性,在大多数保护区中,对膜翅目昆虫的遗传多样性和分子鉴定的关注有限。这项研究提供了对从HazarganjiChiltan国家公园(HCNP)收集的膜翅目昆虫的第一个DNA条形码的见解,并为DNA条形码的全球参考库做出了贡献。使用Malaise陷阱共收集了784个昆虫标本,其中538(68.62%)个标本在形态上被鉴定为膜翅目昆虫。8月观察到膜翅目物种的最高丰度(133/538,24.72%),11月最少(16/538,2.97%)。使用标准的酚-氯仿方法从90/538(16.73%)形态学鉴定的标本中单独进行基因组DNA提取,通过扩增细胞色素c氧化酶亚基1(cox1)基因分别进行PCR以进行分子确认。获得的序列的BLAST分析显示与相关序列具有91.64%至100%的同一性,并与澳大利亚报道的相应序列进行了系统发育聚类,保加利亚,加拿大,芬兰,德国,印度,以色列,和巴基斯坦。此外,共有13个条形码索引号(BIN)由生命数据系统条形码(BOLD)分配,其中12个是非唯一的,一个是唯一的(BOLD:AEU1239),被分配给Anthidium点。这表明HCNP中膜翅目种群的潜在地理差异。需要进一步的全面研究,以分子确认HCNP中现有的昆虫物种,并评估其对环境的影响,两者都是有益的(例如,授粉,蜂蜜生产者和天敌)和有害(例如,毒刺,作物损害,和病原体传播)。
    The order Hymenoptera holds great significance for humans, particularly in tropical and subtropical regions, due to its role as a pollinator of wild and cultivated flowering plants, parasites of destructive insects and honey producers. Despite this importance, limited attention has been given to the genetic diversity and molecular identification of Hymenopteran insects in most protected areas. This study provides insights into the first DNA barcode of Hymenopteran insects collected from Hazarganji Chiltan National Park (HCNP) and contributes to the global reference library of DNA barcodes. A total of 784 insect specimens were collected using Malaise traps, out of which 538 (68.62%) specimens were morphologically identified as Hymenopteran insects. The highest abundance of species of Hymenoptera (133/538, 24.72%) was observed during August and least in November (16/538, 2.97%). Genomic DNA extraction was performed individually from 90/538 (16.73%) morphologically identified specimens using the standard phenol-chloroform method, which were subjected separately to the PCR for their molecular confirmation via the amplification of cytochrome c oxidase subunit 1 (cox1) gene. The BLAST analyses of obtained sequences showed 91.64% to 100% identities with related sequences and clustered phylogenetically with their corresponding sequences that were reported from Australia, Bulgaria, Canada, Finland, Germany, India, Israel, and Pakistan. Additionally, total of 13 barcode index numbers (BINs) were assigned by Barcode of Life Data Systems (BOLD), out of which 12 were un-unique and one was unique (BOLD: AEU1239) which was assigned for Anthidium punctatum. This indicates the potential geographical variation of Hymenopteran population in HCNP. Further comprehensive studies are needed to molecularly confirm the existing insect species in HCNP and evaluate their impacts on the environment, both as beneficial (for example, pollination, honey producers and natural enemies) and detrimental (for example, venomous stings, crop damage, and pathogens transmission).
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  • 文章类型: Journal Article
    膜翅目作为一种常见的防御机制,蜂毒成分复杂。对蜂毒成分进行系统全面的分析有助于早期评估,准确诊断,在蜜蜂叮咬的情况下保护人类的器官功能。为了确定蜜蜂和蜜蜂之间的蜂毒组成和代谢途径的差异,质子核磁共振(1H-NMR)技术用于检测毒液样品中的代谢物。在A.cerana和A.mellifera的毒液中鉴定并结构分析了总共74种代谢物。来自A.cerana和A.mellifera的蜂毒主要成分的组成和丰度差异被定位为四个主要代谢途径:缬氨酸,亮氨酸和异亮氨酸生物合成;甘氨酸,丝氨酸和苏氨酸代谢;丙氨酸,天冬氨酸和谷氨酸代谢;以及三羧酸循环。这些发现表明,蜜蜂毒腺中蛋白质或多肽的合成和代谢活性在A.cerana和A.mellifera之间有所不同。丙酮酸在A.mellifera中的3种选定的代谢途径中高度激活,在A.mellifera毒液中比在A.cerana毒液中更具优势。这些发现表明,蜜蜂毒腺中的丙酮酸参与各种生命活动,如生物合成和能量代谢,通过充当前体物质或中间产物。
    As a common defense mechanism in Hymenoptera, bee venom has complex components. Systematic and comprehensive analysis of bee venom components can aid in early evaluation, accurate diagnosis, and protection of organ function in humans in cases of bee stings. To determine the differences in bee venom composition and metabolic pathways between Apis cerana and Apis mellifera, proton nuclear magnetic resonance (1 H-NMR) technology was used to detect the metabolites in venom samples. A total of 74 metabolites were identified and structurally analyzed in the venom of A. cerana and A. mellifera. Differences in the composition and abundance of major components of bee venom from A. cerana and A. mellifera were mapped to four main metabolic pathways: valine, leucine and isoleucine biosynthesis; glycine, serine and threonine metabolism; alanine, aspartate and glutamate metabolism; and the tricarboxylic acid cycle. These findings indicated that the synthesis and metabolic activities of proteins or polypeptides in bee venom glands were different between A. cerana and A. mellifera. Pyruvate was highly activated in 3 selected metabolic pathways in A. mellifera, being much more dominant in A. mellifera venom than in A. cerana venom. These findings indicated that pyruvate in bee venom glands is involved in various life activities, such as biosynthesis and energy metabolism, by acting as a precursor substance or intermediate product.
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