Escherichia fergusonii

埃希氏菌
  • 文章类型: Case Reports
    背景:费氏大肠杆菌是一种常见的条件致病性细菌,可感染人类和动物。据报道,E.Fergusonii会引起腹泻,呼吸道疾病,和败血症,但很少有报道会引起动物皮肤感染。已从中国穿山甲(Manispentadactylaaurita)的皮肤和肌肉组织中分离出E.fergusonii。迄今为止,没有中国穿山甲有皮肤病临床症状的报道。
    方法:本病例报告描述了1例亚成年(体重:1.1kg)雌性中国穿山甲的临床病例,该穿山甲因腹部皮肤中的E.Fergusonii引起脓疱和皮下化脓性感染。细菌培养,生化分析,利用PCR和组织病理学来鉴定脓疱穿刺液和感染组织中的细菌。据我们所知,这是中国穿山甲上与E.Fergusonii相关的脓疱的首次报道。
    结论:本病例报告显示了首次观察到的中国穿山甲皮肤感染。应将E.Fergusonii感染视为中国穿山甲中脓疱和皮下化脓性皮肤疾病的可能鉴别诊断,我们还为这种疾病的诊断和治疗提供了一些建议。
    BACKGROUND: Escherichia fergusonii is a common conditionally pathogenic bacterium that infects humans and animals. E. fergusonii has been reported to cause diarrhea, respiratory disease, and septicemia, but it is rarely reported to cause skin infections in animals. E. fergusonii has been isolated from the skin and muscular tissue of Chinese pangolin (Manis pentadactyla aurita). To date, there have been no reports of Chinese pangolins with clinical signs of skin diseases.
    METHODS: This case report describes the clinical case of a subadult (bodyweight: 1.1 kg) female Chinese pangolin from wild rescue with pustules and subcutaneous suppurative infection due to E. fergusonii in the abdominal skin. Bacterial culture, Biochemical analysis, PCR and histopathology were utilized to identify the bacteria in the pustule puncture fluid and infected tissue. To the best of our knowledge, this is the first report of E. fergusonii-related pustules on a Chinese pangolin.
    CONCLUSIONS: This case report presents the first observed skin infection in a Chinese pangolin. E. fergusonii infection should be considered as a possible differential diagnosis of pustules and subcutaneous suppurative skin conditions in Chinese pangolins, and we also provide several recommendations for the diagnosis and treatment of this disease.
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  • 文章类型: Review
    我们报告了一名68岁的男子在食管癌手术后经历了大肠杆菌菌血症的病例。患者出现腹痛持续1周的主诉。病人被诊断为食道恶性肿瘤,经手术探查和病理活检证实。患者在术后第12天出现脓毒性休克,血液培养提示Fergusonii生长。用美罗培南治疗后,患者的临床症状明显改善,第二种文化是阴性的。在本文中,我们讨论的特点,诊断,和治疗E.Fergusonii.很少报道E.Fergusonii,及其发病机理,耐药性,潜在影响尚未得到完全证实。因此,本病例报告为有关E.Fergusonii的文献增添了宝贵的知识.
    We report the case of a 68-year-old man who experienced Escherichia fergusonii bacteremia after esophageal cancer surgery. The patient presented with complaints of abdominal pain persisting for 1 week. The patient was diagnosed with esophageal malignancy, which was confirmed by surgical exploration and pathological biopsy. The patient developed septic shock on postoperative day 12, and blood culture suggested the growth of E. fergusonii. After treatment with meropenem, the patient\'s clinical symptoms improved significantly, and the second culture was negative. In this paper, we discuss the characteristics, diagnosis, and treatment of E. fergusonii. E. fergusonii is rarely reported, and its pathogenesis, drug resistance, and potential effects have not been completely confirmed. Thus, this case report adds valuable knowledge to the literature on E. fergusonii.
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  • 文章类型: Review
    背景:费氏大肠杆菌是人类和动物中一种罕见的机会性病原体,尤其是生物膜。
    方法:在一种情况下,在胆汁中检测到具有生物膜的E.Fergusonii,并用银染证明它有生物膜。并对文献检索到的8例E.ergusonii的临床特点及药敏情况进行了总结。
    结果:这是一例带有生物膜的E.Fergusonii,这在中国还没有报道。从文献中检索到的8例没有说明它们是否有生物膜,但我们分析了他们的临床特点和药物敏感性。所有患者均接受抗菌药物治疗。8例患者对哌拉西林/他唑巴坦和亚胺培南敏感6例(75%),但对左氧氟沙星和环丙沙星敏感性差。
    结论:在这种情况下,银染法证明了生物膜,这是中国首例带有生物膜的E.Fergusonii。
    BACKGROUND: Escherichia fergusonii is a rare opportunistic pathogen in humans and animals, especially with biofilm.
    METHODS: In one case, E. fergusonii with biofilm was detected in the bile, and silver staining was used to prove it had biofilm. The clinical characteristics and drug susceptibility of eight cases of E. fergusonii retrieved from the literature were also summarized.
    RESULTS: This is a case of E. fergusonii with biofilm, which has not been reported in China. The 8 cases retrieved from the literature did not specify whether they had biofilm, but we analyzed their clinical characteristics and drug susceptibility. All patients were treated with antimicrobial drugs. 8 cases showed sensitivity to piperacillin/tazobactam and imipenem in 6 cases (75%), but poor sensitivity to levofloxacin and ciprofloxacin.
    CONCLUSIONS: The silver staining method proved biofilm in this case, which is the first case of E. fergusonii with biofilm in China.
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  • 文章类型: Journal Article
    本研究旨在鉴定从中国猪中分离出的具有完整基因组序列的具有替加环素抗性tet(X4)的大肠杆菌。
    E.通过选择性培养基分离弗格森,并从补充替加环素的琼脂平板中筛选。采用微量肉汤稀释法进行药敏试验,最小抑制浓度(MIC)结果参考美国临床和实验室标准研究所(CLSI)的解释标准。在IlluminaHiSeq和NanoporeGridION平台上进行全基因组测序。CGE服务器预测了抗菌素抗性(AMR)基因的毒力基因和质粒的复制子类型。
    E.FergusoniiEF21QZZ116从760个粪便和盲肠内容物样品中鉴定出,对替加环素具有抗性,四环素,氨苄青霉素,硫化异恶唑,甲氧苄啶-磺胺甲恶唑,壮观霉素,和氟苯尼考.AMR基因tet(X4),blaTEM-1B,和floR位于杂交IncFIA-IncHI1A-IncHI1B质粒pQZZ166-tetX-190K上,长度为190391bp。该杂合质粒与大肠杆菌质粒具有较高的同源性,阴沟肠杆菌,克雷伯菌属,柠檬酸杆菌,并与NCBI数据库进行比较分析。值得注意的是,接合转移和S1核酸酶脉冲场凝胶电泳(S1-PFGE)测定表明质粒可以水平转移。
    据我们所知,这是首次报道从猪中分离出携带tet(X4)基因的Fergusonii;该报告提供了对Fergusonii的AMR特征的见解,并提供了对公共卫生的见解.
    This study aimed to identify tigecycline-resistant tet(X4)-bearing Escherichia fergusonii isolated from pigs in China with a complete genome sequence.
    E. fergusonii was isolated by selective medium and screened from tigecycline-supplemented agar plates. The microbroth dilution method was used for antimicrobial susceptibility testing, and the minimal inhibitory concentration (MIC) results refer to the interpretation standard in the Clinical and Laboratory Standards Institute of America (CLSI). Whole-genome sequencing was performed on the Illumina HiSeq and Nanopore GridION platforms. The antimicrobial resistance (AMR) genes virulence genes and replicon types of plasmids were predicted by the CGE server.
    E. fergusonii EF21QZZ116 was identified from 760 faecal and caecal content samples and was resistant to tigecycline, tetracycline, ampicillin, sulfisoxazole, trimethoprim-sulfamethoxazole, spectinomycin, and florfenicol. The AMR genes tet(X4), blaTEM-1B, and floR are located on the hybrid IncFIA-IncHI1A-IncHI1B plasmid pQZZ166-tetX-190K and are 190 391 bp in length. This hybrid plasmid has high homology with the plasmids of Escherichia coli, Enterobacter cloacae, Klebsiella, Citrobacter, and Salmonella based on comparison and analysis with the NCBI database. Notably, conjugative transfer and S1 nuclease pulsed-field gel electrophoresis (S1-PFGE) assays show that the plasmid can transfer horizontally.
    To the best of our knowledge, this is the first report of E. fergusonii carrying the tet(X4) gene isolated from a pig; this report provides insight into the AMR characteristics of E. fergusonii and offers insight into public health.
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  • 文章类型: Journal Article
    共1400个食用动物样本(猪,鸡,和鸭子)是在2019年7月至9月之间在中国收集的,以揭示弗格森的流行及其在抗菌素耐药性(AMR)演变中的潜在作用。进行了E.fergusonii的分离,并使用脉冲场凝胶电泳(PFGE)来揭示遗传关系。使用基于肉汤微量稀释的抗菌药物敏感性测试,对E.Fergusonii分离株的AMR进行了全面表征。S1-PFGE,南方杂交,全基因组测序,和深入的生物信息学分析。因此,共获得133株E.Fergusonii分离株。这些分离株可以分为41个PFGE亚进化枝,表明了不同的遗传关系。最常见的耐药表型为磺脲唑(97.74%)和四环素(94.74%)。在E.Fergusonii分离株中,51.88%为超广谱β-内酰胺酶(ESBL)阳性。根据25个带有mcr-1的基因组序列揭示了43个不同的AMR基因。简而言之,aph(6)-Id,aph(3\'\')-Ib和tet(A)基因是最常见的,率最高为76.00%(19/25)。纳米孔测序后鉴定出三个携带mcr-1的质粒,包括pTB31P1(IncHI2-IncHI2A,184,652bp),pTB44P3(IncI2,62,882bp),和pTB91P1(IncHI2-IncHI2A,255,882个基点)。此外,将25个携带mcr-1的E.Fergusonii分离株与GenBank中来自不同地区和来源的其他E.Fergusonii分离株聚集在一起,暗示了在E.Fergusonii中mcr-1传播的可能的随机过程。总之,E.Fergusonii在中国的食用动物中广泛存在,可能是AMR基因的重要储存库,特别是mcr-1,促进AMR的进化。重要性E.Fergusonii,埃希氏菌属的成员,据报道通过食物链传播并导致人类疾病。然而,耐多药E.Fergusonii的患病率,尤其是mcr-1阳性E.Fergusonii分离株,很少有报道。这里,我们从中国三个省的食用动物中收集了1,400个样本,并获得了133个E.fusonii分离株(9.5%)。我们发现,E.fergusonii分离株的流行是不同的,具有高水平的抗菌素耐药性。其中,18.8%的大肠杆菌分离株携带粘菌素抗性基因mcr-1。因此,E.Fergusonii可能促进粘菌素抗性作为mcr-1的储层的进化。据我们所知,本研究中食用动物中的Fergusonii的患病率和AMR在中国首次报道。这些发现增加了我们对E.fergusonii在公共卫生和抗生素耐药性演变中的作用的理解。
    A total of 1,400 samples of food animals (pigs, chickens, and ducks) were collected between July and September 2019 in China to uncover the prevalence of E. fergusonii and its potential role in the evolution of antimicrobial resistance (AMR). An isolation of E. fergusonii was performed and pulsed-field gel electrophoresis (PFGE) was used to uncover the genetic relationship. The AMR of E. fergusonii isolates was comprehensively characterized using broth microdilution-based antimicrobial susceptibility testing, S1-PFGE, southern hybridization, whole-genome sequencing, and in-depth bioinformatics analysis. As a result, a total of 133 E. fergusonii isolates were obtained. These isolates could be grouped into 41 PFGE subclades, suggesting a diverse genetic relationship. The resistance phenotypes of sulfafurazole (97.74%) and tetracycline (94.74%) were the most frequently found. Of the E. fergusonii isolates, 51.88% were extended spectrum beta-lactamase (ESBL)-positive. Forty-three different AMR genes were revealed based on 25 genome sequences harboring mcr-1. Briefly, aph(6)-Id, aph(3\'\')-Ib and tet(A) genes were the most frequently observed, with the highest rate being 76.00% (19/25). Three mcr-1-harboring plasmids were identified after Nanopore sequencing, including pTB31P1 (IncHI2-IncHI2A, 184,652 bp), pTB44P3 (IncI2, 62,882 bp), and pTB91P1 (IncHI2-IncHI2A, 255,882 bp). Additionally, 25 E. fergusonii isolates harboring mcr-1 were clustered together with other E. fergusonii isolates from different regions and sources available in GenBank, suggesting a possible random process of mcr-1 transmission in E. fergusonii. In conclusion, E. fergusonii is widespread in food animals in China and might be an important reservoir of AMR genes, especially mcr-1, and facilitate the evolution of AMR. IMPORTANCEE. fergusonii, a member of the genus Escherichia, has been reported to transmit via the food chain and cause diseases in humans. However, the prevalence of multidrug-resistant E. fergusonii, especially mcr-1-positive E. fergusonii isolates, has rarely been reported. Here, we collected 1,400 samples from food animals in three provinces of China and obtained 133 E. fergusonii isolates (9.5%). We found that the prevalence of E. fergusonii isolates was diverse, with high levels of antimicrobial resistance. Among them, 18.8% E. fergusonii isolates carried the colistin resistance gene mcr-1. Thus, E. fergusonii may facilitate the evolution of colistin resistance as a reservoir of mcr-1. As far as we know, the prevalence and AMR of E. fergusonii in the food animals in this study was first reported in China. These findings increase our understanding of the role of E. fergusonii in public health and the evolution of antibiotic resistance.
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