共1400个食用动物样本(猪,鸡,和鸭子)是在2019年7月至9月之间在中国收集的,以揭示弗格森的流行及其在抗菌素耐药性(AMR)演变中的潜在作用。进行了E.fergusonii的分离,并使用脉冲场凝胶电泳(PFGE)来揭示遗传关系。使用基于肉汤微量稀释的抗菌药物敏感性测试,对E.Fergusonii分离株的AMR进行了全面表征。S1-PFGE,南方杂交,全基因组测序,和深入的生物信息学分析。因此,共获得133株E.Fergusonii分离株。这些分离株可以分为41个PFGE亚进化枝,表明了不同的遗传关系。最常见的耐药表型为磺脲唑(97.74%)和四环素(94.74%)。在E.Fergusonii分离株中,51.88%为超广谱β-内酰胺酶(ESBL)阳性。根据25个带有mcr-1的基因组序列揭示了43个不同的AMR基因。简而言之,aph(6)-Id,aph(3\'\')-Ib和tet(A)基因是最常见的,率最高为76.00%(19/25)。纳米孔测序后鉴定出三个携带mcr-1的质粒,包括pTB31P1(IncHI2-IncHI2A,184,652bp),pTB44P3(IncI2,62,882bp),和pTB91P1(IncHI2-IncHI2A,255,882个基点)。此外,将25个携带mcr-1的E.Fergusonii分离株与GenBank中来自不同地区和来源的其他E.Fergusonii分离株聚集在一起,暗示了在E.Fergusonii中mcr-1传播的可能的随机过程。总之,E.Fergusonii在中国的食用动物中广泛存在,可能是AMR基因的重要储存库,特别是mcr-1,促进AMR的进化。重要性E.Fergusonii,埃希氏菌属的成员,据报道通过食物链传播并导致人类疾病。然而,耐多药E.Fergusonii的患病率,尤其是mcr-1阳性E.Fergusonii分离株,很少有报道。这里,我们从中国三个省的食用动物中收集了1,400个样本,并获得了133个E.fusonii分离株(9.5%)。我们发现,E.fergusonii分离株的流行是不同的,具有高水平的抗菌素耐药性。其中,18.8%的大肠杆菌分离株携带粘菌素抗性基因mcr-1。因此,E.Fergusonii可能促进粘菌素抗性作为mcr-1的储层的进化。据我们所知,本研究中食用动物中的Fergusonii的患病率和AMR在中国首次报道。这些发现增加了我们对E.fergusonii在公共卫生和抗生素耐药性演变中的作用的理解。
A total of 1,400 samples of food animals (pigs, chickens, and ducks) were collected between July and September 2019 in
China to uncover the prevalence of E. fergusonii and its potential role in the evolution of antimicrobial resistance (AMR). An isolation of E. fergusonii was performed and pulsed-field gel electrophoresis (PFGE) was used to uncover the genetic relationship. The AMR of E. fergusonii isolates was comprehensively characterized using broth microdilution-based antimicrobial susceptibility testing, S1-PFGE, southern hybridization, whole-genome sequencing, and in-depth bioinformatics analysis. As a result, a total of 133 E. fergusonii isolates were obtained. These isolates could be grouped into 41 PFGE subclades, suggesting a diverse genetic relationship. The resistance phenotypes of sulfafurazole (97.74%) and tetracycline (94.74%) were the most frequently found. Of the E. fergusonii isolates, 51.88% were extended spectrum beta-lactamase (ESBL)-positive. Forty-three different AMR genes were revealed based on 25 genome sequences harboring mcr-1. Briefly, aph(6)-Id, aph(3\'\')-Ib and tet(A) genes were the most frequently observed, with the highest rate being 76.00% (19/25). Three mcr-1-harboring plasmids were identified after Nanopore sequencing, including pTB31P1 (IncHI2-IncHI2A, 184,652 bp), pTB44P3 (IncI2, 62,882 bp), and pTB91P1 (IncHI2-IncHI2A, 255,882 bp). Additionally, 25 E. fergusonii isolates harboring mcr-1 were clustered together with other E. fergusonii isolates from different regions and sources available in GenBank, suggesting a possible random process of mcr-1 transmission in E. fergusonii. In conclusion, E. fergusonii is widespread in food animals in
China and might be an important reservoir of AMR genes, especially mcr-1, and facilitate the evolution of AMR. IMPORTANCEE. fergusonii, a member of the genus Escherichia, has been reported to transmit via the food chain and cause diseases in humans. However, the prevalence of multidrug-resistant E. fergusonii, especially mcr-1-positive E. fergusonii isolates, has rarely been reported. Here, we collected 1,400 samples from food animals in three provinces of
China and obtained 133 E. fergusonii isolates (9.5%). We found that the prevalence of E. fergusonii isolates was diverse, with high levels of antimicrobial resistance. Among them, 18.8% E. fergusonii isolates carried the colistin resistance gene mcr-1. Thus, E. fergusonii may facilitate the evolution of colistin resistance as a reservoir of mcr-1. As far as we know, the prevalence and AMR of E. fergusonii in the food animals in this study was first reported in
China. These findings increase our understanding of the role of E. fergusonii in public health and the evolution of antibiotic resistance.