COI

COI
  • 文章类型: Journal Article
    宇航员海是南大洋中进入最少的地区之一,我们对该地区鱼类生物多样性的了解很少。在这项研究中,我们通过分析在第37和38次中国国家南极研究考察队(CHINARE)航行中通过拖网捕捞的98个鱼类样品的细胞色素氧化酶I(COI)条形码,提供了对宇航员海底栖鱼类多样性的描述。代表19属和11科的24种,即,甲科,Bathydraconidae,鱼科,甲虫科,Liparidae,巨尿科,Muraenolepidae,Myctophidae,Nototheniidae,副翅目和动物园科,被歧视和识别,与南极高陆架地区的当地鱼类发生记录和底栖鱼类群落的一般模式基本相同。由于两种潜在隐蔽物种的指示性信号,未能在所有物种中检测到和确认条形码间隙的有效性。然而,DNA条形码仍然被证明是区分和分类南极鱼类的一种非常有效和合理的方法。在未来,鼓励涵盖宇航员海所有地理部分和深度地层的各种采样策略,以增强我们对当地鱼类群落的了解,在其中,DNA条形码可以在分子分类学或建立用于eDNA元条形码分析的专用本地参考数据库中发挥重要作用。
    The Cosmonaut Sea is one of the least accessed regions in the Southern Ocean, and our knowledge about the fish biodiversity in the region is sparse. In this study, we provided a description of demersal fish diversity in the Cosmonaut Sea by analysing cytochrome oxidase I (COI) barcodes of 98 fish samples that were hauled by trawling during the 37th and 38th Chinese National Antarctic Research Expedition (CHINARE) cruises. Twenty-four species representing 19 genera and 11 families, namely, Artedidraconidae, Bathydraconidae, Bathylagidae, Channichthyidae, Liparidae, Macrouridae, Muraenolepididae, Myctophidae, Nototheniidae, Paralepididae and Zoarcidae, were discriminated and identified, which were largely identical to local fish occurrence records and the general pattern of demersal fish communities at high Antarctic shelf areas. The validity of a barcoding gap failed to be detected and confirmed across all species due to the indicative signals of two potential cryptic species. Nevertheless, DNA barcoding still demonstrated to be a very efficient and sound method for the discrimination and classification of Antarctic fishes. In the future, various sampling strategies that cover all geographic sections and depth strata of the Cosmonaut Sea are encouraged to enhance our understanding of local fish communities, within which DNA barcoding can play an important role in either molecular taxonomy or the establishment of a dedicated local reference database for eDNA metabarcoding analyses.
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  • 文章类型: Journal Article
    ThianiaC.L.Koch属的三个新种,1846年和YaginumaellaPrószyñski,1979年被描述并命名为T.bamiansp。11月。T.flacatasp.11月。()和Y.curvatasp。11月。来自湖南省,中国。详细说明,躯体特征和交配器官的照片,以及分布图。条形码基因的核苷酸数据,T.bamiansp的细胞色素c氧化酶亚基I(COI)。11月。(‰‰)和Y.curvatasp.11月。(等)提供。
    Three new species of the genera Thiania C. L. Koch, 1846 and Yaginumaella Prószyński, 1979 are described and named as T.bamian sp. nov. (♂♀), T.flacata sp. nov. (♀) and Y.curvata sp. nov. (♂♀), from Hunan Province, China. Detailed descriptions, photos of somatic features and copulatory organs, as well as a distribution map are provided. Nucleotide data for the barcoding gene, cytochrome c oxidase subunit I (COI) of T.bamian sp. nov. (♂♀) and Y.curvata sp. nov. (♀) are provided.
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  • 文章类型: Journal Article
    KarschiaWalter属的物种,1889年,从西藏收集,中国,被审查了。利用形态学和分子数据共识别出6个物种,卡尔希亚(Karschia)西藏赫斯特,1907年是根据新收集的雄性和雌性重新描述的,和五个新物种,Karschia(Karschia)dingyesp.11月。,卡尔希亚(卡尔希亚)拉萨普。11月。,Karschia(Karschia)zhuisp.11月。,卡尔希亚(Karschia)shigatsesp。11月。,和Karschia(Karschia)namlingsp。11月。,被描述。
    The species of the genus Karschia Walter, 1889, collected from Xizang, China, were reviewed. A total of six species were recognized using morphological and molecular data, Karschia (Karschia) tibetana Hirst, 1907 is redescribed based on newly collected males and females, and five new species, Karschia (Karschia) dingyesp. nov., Karschia (Karschia) lhasasp. nov., Karschia (Karschia) zhuisp. nov., Karschia (Karschia) shigatsesp. nov., and Karschia (Karschia) namlingsp. nov., are described.
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  • 文章类型: Journal Article
    在马来西亚半岛东海岸的登嘉楼州描述了四种新的Marphysa物种,使用形态学和分子(细胞色素氧化酶亚基I(COI)基因)数据。这些物种属于Marphysa的不同类别:Marphysakertehensissp。11月。属于A组(Mossambica),马physamerchansissp.11月。和Marphysasetiuensesp.11月。属于B组(Sanguinea)和Marphysaibaiensissp。11月。属于E组(Gravelyi)。Marphysakertehensissp.11月。其特征是只有边缘的chaetae,没有针状钩,三种类型的果胶盐,包括宽,厚的等孔带短而细长的内齿,和多达九根分支丝的果胶状分支。马physamerchansissp.11月。以眼睛的存在为特征,单齿针状下钩,四种类型的果胶盐,包括宽,有五个长而厚的内齿,和果胶状的分支,最多六个分支细丝。Marphysasetiuensesp.11月。大多具有单齿的针状下钩(在几个后嵌体上为双齿),四种类型的果胶盐,包括宽,有七个又厚又长的内齿,和最多五个分支细丝的果胶状分支。Marphysaibaiensissp.11月。整个都有双齿针状下钩,五种类型的果胶盐,包括一个有12颗短而细长的内齿的异形体,和多达八根分支丝的果胶状分支。分子数据完全支持基于形态学的这些新物种的命名。还包括每个物种的栖息地描述。
    Four new species of Marphysa are described from Terengganu state on the east coast of Peninsular Malaysia, using morphological and molecular (cytochrome oxidase subunit I (COI) gene) data. These species belong to different groups of Marphysa: Marphysakertehensis sp. nov. belongs to Group A (Mossambica), Marphysamerchangensis sp. nov. and Marphysasetiuense sp. nov. belong to Group B (Sanguinea) and Marphysaibaiensis sp. nov. belongs to Group E (Gravelyi). Marphysakertehensis sp. nov. is characterised by having only limbate chaetae, absence of subacicular hooks, three types of pectinate chaetae including wide, thick isodont with short and slender inner teeth, and pectinate branchiae with up to nine branchial filaments. Marphysamerchangensis sp. nov. is characterised by the presence of eyes, unidentate subacicular hooks, four types of pectinate chaetae including wide, thick anodont pectinate chaetae with five long and thick inner teeth, and pectinate branchiae with up to six branchial filaments. Marphysasetiuense sp. nov. has mostly unidentate subacicular hooks (bidentate on several posterior chaetigers), four types of pectinate chaetae including wide, thick anodont pectinate chaetae with seven thick and long inner teeth, and pectinate branchiae with up to five branchial filaments. Marphysaibaiensis sp. nov. has bidentate subacicular hooks throughout, five types of pectinate chaetae, including a heterodont with 12 short and slender inner teeth, and pectinate branchiae with up to eight branchial filaments. The designation of these new species based on morphology is fully supported by molecular data. Habitat descriptions of each species are also included.
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  • 文章类型: Journal Article
    Crassostreaariakensis(Fujita,1913)是亚洲沿海自然分布的最重要的经济和生态牡蛎之一,被长江口隔开。通常将它们作为不同的种群进行比较,尽管对于北部和南部地区的C.ariakensis是否应被视为两个物种或亚种,尚无共识。这里,我们分析了形态特征,COI,16srRNA,有丝分裂基因组序列,和物种定界分析(ASAP和PTP)来解决C.ariakensis的种内分类地位。系统发育和ASAP分析强调了C.ariakensis分为N型和S型。PTP无法区分两种类型的C.ariakensis。N型和S型C.ariakinsis的发散时间估计为1.6Mya,使用放松的不相关对数正态时钟方法。此外,两组在内收肌瘢痕颜色方面存在显著的形态学差异。尽管存在这些差异,N型和S型C.ariakensis之间的COI(0.6%)和16SrRNA(0.6%)遗传距离差异尚未达到种间水平。这些结果表明,应将N型和S型C.ariakensis视为不同的亚种,并更名为C.ariakensisariakensis亚种。nov和C.ariakensis子午线。11月。
    Crassostrea ariakensis (Fujita, 1913) is one of the most important economic and ecological oysters that is naturally distributed along the coast of Asia, separated by the Yangtze River estuary. They are usually compared as different populations, while there is no consensus on whether C. ariakensis in northern and southern areas should be considered as two species or subspecies. Here, we analyzed morphological characteristics, COI, 16s rRNA, mitogenome sequences, and species delimitation analysis (ASAP and PTP) to resolve the intraspecific taxonomic status of the C. ariakensis. Phylogenetic and ASAP analysis highlight that C. ariakensis was divided into N-type and S-type. PTP was unable to differentiate between the two types of C. ariakensis. The divergence time of N-type and S-type C. ariakinsis is estimated to be 1.6 Mya, using the relaxed uncorrelated lognormal clock method. Additionally, significant morphological differences exist between the two groups in terms of the adductor muscle scar color. Despite these differences, the COI (0.6%) and 16S rRNA (0.6%) genetic distance differences between N-type and S-type C. ariakensis has not yet reached the interspecific level. These results suggest that N-type and S-type C. ariakensis should be treated as different subspecies and renamed as C. ariakensis ariakensis subsp. nov and C. ariakensis meridioyangtzensis subsp. nov.
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  • 文章类型: Journal Article
    长腿囊蜘蛛属的两种,从中国收集的1839年被诊断和描述为新的科学:Cheiracanthiumbannaenisp。11月。来自云南省和C.bifurcatumsps。11月。来自新疆维吾尔自治区的(‰‰)。给出了习性和交配器官的照片。此外,提供了两个新物种的DNA条形码信息。
    Two species of the long-legged sac spider genus Cheiracanthium C. L. Koch, 1839 collected from China are diagnosed and described as new to science: Cheiracanthiumbannaensissp. nov. (♂♀) from Yunnan Province and C.bifurcatumsp. nov. (♂♀) from Xinjiang Uyger Autonomous Region. Photos of the habitus and copulatory organs are given. In addition, DNA barcode information of the two new species is provided.
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  • 文章类型: Journal Article
    修订了高原象鼻虫属的中国种,包括一个已知的物种,P.lampoglobusChao&Y.-Q.陈,1980年,以及两个新物种的描述,P.pilosussp.11月。和P.arcuratussp.11月。中国的所有毛节物种都发生在西藏(西藏),中国,并提出了这些物种的关键。此外,两个物种的COI序列,P.lampoglobus和P.pilosussp.11月。,提供,遗传距离的细节。
    The Chinese species of the highland weevil genus Pachynotus is revised, including a single known species, P.lampoglobus Chao & Y.-Q. Chen, 1980, and the descriptions of two new species, P.pilosussp. nov. and P.arcuatussp. nov. All Chinese Pachynotus species occur in Xizang (Tibet), China, and a key to these species is presented. Additionally, the COI sequences of two species, P.lampoglobus and P.pilosussp. nov., are provided, with details of the genetic distance.
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  • 文章类型: Journal Article
    人口和海洋生物多样性都集中在海岸线上,随着人们对这些生态系统如何在强烈的人为影响中生存的兴趣越来越大。热带城市中心提供了宝贵的研究机会,因为这些特大城市通常与大型多样的珊瑚礁系统相邻。珠江三角洲是一个典型的例子,因为它涵盖了世界上人口最稠密和受影响最严重的地区之一,位于珊瑚三角的西北部。然而,这种生物多样性的空间和分类复杂性,大部分都很小,隐秘的栖息地和鲜为人知的,使比较分析具有挑战性。我们在人类影响强度不同的七个地点部署了标准化的定居结构,并使用COI元碳编码来表征底栖生物多样性,专注于后生动物。我们总共发现了7184个OTU,每个采样单位平均有665个OTU;这些数字超过了许多以前使用可比方法的研究中观察到的数字,尽管我们的研究地点在城市化的环境中。β多样性也很高,52%的OTU只在一个地点找到。不出所料,我们发现,与沐浴在污染较少的海洋水域中的地点相比,靠近点污染源的地点的多样性大大降低(减少了44%)。然而,受污染的地点对该地区的总动物多样性做出了重大贡献,25%的OTU只发生在受污染的地点。对节肢动物的进一步分析,Annelida和Mollusca表明,一个位点内的系统发育聚类是常见的,这表明环境过滤将生物多样性减少到该地区存在的一个谱系子集,在受污染的地点和节肢动物中最明显的模式。珠三角周围的水质梯度突出了原位研究在了解复杂的城市化压力对生物多样性的影响方面的独特作用。
    Both human populations and marine biodiversity are concentrated along coastlines, with growing conservation interest in how these ecosystems can survive intense anthropogenic impacts. Tropical urban centres provide valuable research opportunities because these megacities are often adjacent to mega-diverse coral reef systems. The Pearl River Delta is a prime exemplar, as it encompasses one of the most densely populated and impacted regions in the world and is located just northwest of the Coral Triangle. However, the spatial and taxonomic complexity of this biodiversity, most of which is small, cryptic in habitat and poorly known, make comparative analyses challenging. We deployed standardized settlement structures at seven sites differing in the intensity of human impacts and used COI metabarcoding to characterize benthic biodiversity, with a focus on metazoans. We found a total of 7184 OTUs, with an average of 665 OTUs per sampling unit; these numbers exceed those observed in many previous studies using comparable methods, despite the location of our study in an urbanized environment. Beta diversity was also high, with 52% of the OTUs found at just one site. As expected, we found that the sites close to point sources of pollution had substantially lower diversity (44% less) relative to sites bathed in less polluted oceanic waters. However, the polluted sites contributed substantially to the total animal diversity of the region, with 25% of all OTUs occurring only within polluted sites. Further analysis of Arthropoda, Annelida and Mollusca showed that phylogenetic clustering within a site was common, suggesting that environmental filtering reduced biodiversity to a subset of lineages present within the region, a pattern that was most pronounced in polluted sites and for the Arthropoda. The water quality gradients surrounding the PRD highlight the unique role of in situ studies for understanding the impacts of complex urbanization pressures on biodiversity.
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  • 文章类型: Journal Article
    在五次科学考察(2018-2023年)期间,使用潜水器“Shenhaiyongshi”收集了深海全息标本。我们对来自南海和马里亚纳前弧地区的Deimatidae标本的检查发现了三个新物种,被描述为Oneirophantaidsseicasp。11月。,单纯性abrunneannulatasp。11月。,和Oneiphantantalucernasp。11月。这些物种通过排列彼此区分,也与同类物种区分开来,腹外侧管足和听骨类型的数量。我们还报道了OneiphantamutabilismutabilisThéel,1879年第一次从马里亚纳前弧区,我们第二次从南中国海记录了Deimavalidumdum。讨论了这些新物种和新记录的分类学,并基于16S和COI基因的串联数据集进行系统发育分析。此外,我们计算的种间和种内遗传差异。结果支持将这些新物种分配给Onirophanta属并将其与同类物分离。还提供了对Oniphanta物种的主要形态特征的描述。这些数据是从地理上不同的地区收集的,表明太平洋中的Deimatidae物种丰富,并占据了广泛的深度。
    Deep-sea holothurian specimens were collected during five scientific expeditions (2018-2023) using the submersible vehicle \'Shenhaiyongshi\'. Our examination of specimens of Deimatidae from the South China Sea and the Mariana fore-arc area revealed three new species, which were described as Oneirophantaidsseicasp. nov., Oneirophantabrunneannulatasp. nov., and Oneirophantalucernasp. nov. These species were distinguished from each other and from congeners by the arrangement, and number of ventrolateral tube feet and ossicle types. We also reported Oneirophantamutabilismutabilis Théel, 1879 for the first time from the Mariana fore-arc area, and we recorded Deimavalidumvalidum for the second time from the South China Sea. The taxonomy of these new species and new records is discussed, and a phylogenetic analysis based on a concatenated dataset of 16S and COI genes was conducted. Additionally, the inter- and intraspecific genetic divergences we calculated among deimatid species. The results support the assignment of these new species to the genus Oneirophanta and their separation from congeners. A description of the main morphological characters of Oneirophanta species is also provided. The data were collected from geographically diverse areas and suggest that species of Deimatidae were abundant in the Pacific Ocean and occupied a wide range of depths.
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  • 文章类型: Journal Article
    Stictochironomus属(双翅目:Chironomidae)几乎在世界范围内分布,超过30种。然而,基于翅膀和腿上标记的物种定界和识别是有争议和不确定的。在这项研究中,我们专注于颜色模式来回顾来自中国的该属的成虫,和两个新物种(S.trifuscipessp.11月。和S.quadrimaculatussp.11月。)被描述和计算。DNA条形码可以准确地将具有特定颜色模式的两个新物种分开。然而,异源个体在系统发育树中形成单系簇。例如,S.Maculipennis(Meigen)和S.pictulus(Meigen),具有较低的种间遗传差异,形成一个单一的进化枝。具有相同物种名称但具有高种内距离的序列形成多个系统发育进化枝,例如三个分支的S.sticicus(Fabricius),美国四个分支的皮球,S.akizukii(Tokunaga)和S.jomaiiQi,施,和两个分支的王,可能有潜在的隐秘物种多样性。使用ASAP进行物种定界分析,PTP,GMYC明确将它们划分为单独的物种。因此,颜色图案是Stictochiromus物种划界的良好诊断特征。基于距离的分析表明,4.5-7.7%的阈值适用于Stictochironomus的物种划界。此外,提供了最新的密钥,包括来自中国的已知Stictochironomus物种的雄性成虫的颜色模式变化。
    The genus Stictochironomus (Diptera: Chironomidae) has an almost worldwide distribution, with more than 30 species. However, species delimitation and identification based on the markings on the wings and legs are controversial and uncertain. In this study, we focused on color patterns to review the adults of the genus from China, and two new species (S. trifuscipes sp. nov. and S. quadrimaculatus sp. nov.) are described and figured. DNA barcodes can accurately separate the two new species with specific color patterns. However, heterospecific individuals form a monophyletic cluster in the phylogeny tree. For example, S. maculipennis (Meigen) and S. pictulus (Meigen), which have a lower interspecific genetic divergence, form a single clade. Sequences with the same species name but with high intraspecific distance form more than one phylogenetic clade, such as S. sticticus (Fabricius) of three clades, S. pictulus of four clades, S. akizukii (Tokunaga) and S. juncaii Qi, Shi, and Wang of two clades, might have potential cryptic species diversity. Species delimitation analysis using ASAP, PTP, and GMYC clearly delineated them as separate species. Consequently, color patterns are a good diagnostic characteristic for species delimitation in Stictochironomus. The distance-based analysis shows that a threshold of 4.5-7.7% is appropriate for species delimitation in Stictochironomus. Additionally, an updated key including color pattern variation for male adults of known Stictochironomus species from China is provided.
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