Bioconjugation

生物缀合
  • 文章类型: Journal Article
    表面功能化策略正成为从磁性纳米粒子(MNPs)到其广泛生物应用的关键桥梁。为了实现MNPs的多种功能,如磁操纵,目标捕获,和信号放大在他们使用电化学生物传感,本文提出了通过结合超敏感氧化还原部分和特异性生物探针来构建双官能化MNPs的共交联策略。在这项工作中,通过用于胺化和PEG化的共沉淀来合成TEM尺寸为10nm的MNPs,以在分散于高离子强度缓冲液(例如磷酸盐缓冲盐水)中时保持胶体稳定性。然后,通过双(磺基琥珀酰亚胺基)辛二酸盐(BS3)交联剂将这些IgG缀合到MNP表面上制备MNPs@IgG。结合效率为73%。要构建双官能化MNPs,这些二茂铁-NHS(Fc)的氧化还原探针共交联到MNP表面,与IgG一起,使用BS3。通过SDS-PAGE对开发的MNPs@Redox@IgG进行表征,以鉴定IgG结合,并通过方波伏安法(SWV)验证氧化还原信号。此外,选择抗CD63抗体用于开发MNPs@抗CD63,用于外泌体样品捕获的生物测试。因此,共交联策略为开发双官能化的MNPs铺平了道路,这可以帮助它们在诊断测定或电化学方法中的潜在利用。
    Surface functionalization strategy is becoming a crucial bridge from magnetic nanoparticles (MNPs) to their broad bio-application. To realize the multiple functions of MNPs such as magnetic manipulation, target capture, and signal amplification in their use of electrochemical biosensing, co-crosslinking strategy was proposed here to construct dual-functionalized MNPs by combining ultra-sensitive redox moieties and specific biological probes. In this work, MNPs with a TEM size of 10 nm were synthesized by co-precipitation for amination and PEGylation to maintain colloid stability once dispersed in high-ionic-strength buffer (such as phosphate-buffered saline). Then, MNPs@IgG were prepared via the bis(sulfosuccinimidyl) suberate (BS3) cross-linker to conjugate these IgG onto the MNP surface, with a binding efficiency of 73%. To construct dual-functionalized MNPs, these redox probes of ferrocene-NHS (Fc) were co-crosslinked onto the MNP surface, together with IgG, by using BS3. The developed MNPs@Redox@IgG were characterized by SDS‒PAGE to identify IgG binding and by square wave voltammetry (SWV) to validate the redox signal. Additionally, the anti-CD63 antibodies were selected for the development of MNPs@anti-CD63 for use in the bio-testing of exosome sample capture. Therefore, co-crosslinking strategy paved a way to develop dual-functionalized MNPs that can be an aid of their potential utilization in diagnostic assay or electrochemical methods.
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  • 文章类型: Journal Article
    高效和精确的化学蛋白质修饰方法在生物技术中备受追捧。然而,用化学方法区分大蛋白质中的单个位点是具有挑战性的。本研究介绍了一种铜辅助序列特异性缀合标签(CAST)方法,使蛋白质骨架的快速(二阶速率8.1M-1s-1)和位点特异性化学修饰具有精确的准确性。通过制备抗体-药物缀合物证明了该方法的多功能性,在体外和体内设置中显示出高血浆稳定性和有效功效。因此,CAST作为一种有效和定量的方法出现,用于将有效载荷附加到大的,天然蛋白质。
    Efficient and precise chemical protein modification methods are highly sought after in biotechnology. However, chemically distinguishing a single site within a large protein is challenging. This study introduces a Copper Assisted Sequence-specific Conjugation Tag (CAST) method, enabling rapid (second order rate 8.1 M-1s-1) and site-specific chemical modification of the protein backbone with pinpoint accuracy. The versatility of this method is demonstrated through the preparation of antibody-drug conjugates, showcasing high plasma stability and potent efficacy in both in vitro and in vivo settings. Thus, CAST emerges as an efficient and quantitative approach for attaching payloads to large, native proteins.
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  • 文章类型: Journal Article
    点击化学是快速发现功能的强大分子组装策略。具有新的连接链接的点击反应的开发对于扩展点击化学工具箱非常重要。我们报告了苯并硒唑酮与末端炔烃(Se-N至Se-C)之间的第一个硒氮交换(SeNex)点击反应,其灵感来自Ebselen和半胱氨酸(Cys)残基(Se-N至Se-S)之间的生化SeNex。形成的硒炔烃连接很容易阐述,从而赋予这种化学多维分子多样性。此外,这种反应是模块化的,可预测的,和高产,具有快速动力学(k2≥14.43M-1s-1),优异的官能团相容性,并且在小型化(纳摩尔尺度)方面效果很好,为有机硒合成和生物缀合开辟了许多有趣的机会,如顺序点击化学(与钌催化的叠氮化物-炔环加成(RuAAC)和硫-氟化物交换(SuFEx)偶联)硒代碳氢合成,含硒天然产物库和DNA编码库(DEL)的纳米摩尔尺度合成,晚期肽修饰和连接,和蛋白质的多重功能化。这些结果表明,SeNEx是新的点击化学开发的有用策略,建立的SeNEx化学将成为合成化学等多学科领域的变革性平台,材料科学,化学生物学,医学化学,和药物发现。
    Click chemistry is a powerful molecular assembly strategy for rapid functional discovery. The development of click reactions with new connecting linkage is of great importance for expanding the click chemistry toolbox. We report the first selenium-nitrogen exchange (SeNEx) click reaction between benzoselenazolones and terminal alkynes (Se-N to Se-C), which is inspired by the biochemical SeNEx between Ebselen and cysteine (Cys) residue (Se-N to Se-S). The formed selenoalkyne connection is readily elaborated, thus endowing this chemistry with multidimensional molecular diversity. Besides, this reaction is modular, predictable, and high-yielding, features fast kinetics (k2≥14.43 M-1 s-1), excellent functional group compatibility, and works well at miniaturization (nanomole-scale), opening up many interesting opportunities for organo-Se synthesis and bioconjugation, as exemplified by sequential click chemistry (coupled with ruthenium-catalyzed azide-alkyne cycloaddition (RuAAC) and sulfur-fluoride exchange (SuFEx)), selenomacrocycle synthesis, nanomole-scale synthesis of Se-containing natural product library and DNA-encoded library (DEL), late-stage peptide modification and ligation, and multiple functionalization of proteins. These results indicated that SeNEx is a useful strategy for new click chemistry developments, and the established SeNEx chemistry will serve as a transformative platform in multidisciplinary fields such as synthetic chemistry, material science, chemical biology, medical chemistry, and drug discovery.
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  • 文章类型: Journal Article
    具有蠕虫状形态的聚(单甲基丙烯酸甘油酯)-嵌段聚(甲基丙烯酸2-羟丙酯)(PGMA-PHPMA)是通过聚合诱导的自组装(PISA)在水溶液中的可逆加成-断裂链转移(RAFT)分散聚合的热响应性共聚物的典型例子。链转移剂(CTAs)是控制RAFT的关键组分,其结构决定了聚合物链的末端官能团。因此,通过CTA部分单官能化聚合物是有意义的,用于生物活性官能团缀合,并且同时保持共聚物的精确控制的形态和相关性质。在这项工作中,合成了一种新设计的CTA5-(2-(叔丁氧基羰基氨基)乙基氨基)-2-氰基-5-氧代戊烷-2-基苯甲酸酯(t-BocCPDB),并用于PGMA45-PHPMA120的RAFT聚合。随后,PGMA45-PHPMA120与伯胺的共聚物,马来酰亚胺,通过去保护和缀合反应合成还原的L-谷胱甘肽(三肽)单官能化末端。这些单官能化共聚物在水溶液(10%w/v)中保持蠕虫状形态和热响应性,正如透射电子显微镜(TEM)图像所证实的那样,以及在4°C至室温(〜20°C)之间的相变行为的观察,分别。总之,成功合成了一系列热响应性单官能化PGMA45-PHPMA120二嵌段共聚物蠕虫,有望提供潜在的生物医学应用,比如在聚合物疗法中,药物输送,和诊断。
    Poly(glycerol monomethacrylate)-block-poly(2-hydroxypropyl methacrylate) (PGMA-PHPMA) with worm-like morphology is a typical example of reversible addition-fragmentation chain transfer (RAFT) dispersion polymerized thermo-responsive copolymer via polymerization-induced self-assembly (PISA) in aqueous solution. Chain transfer agents (CTAs) are the key component in controlling RAFT, the structures of which determine the end functional groups of the polymer chain. It is therefore of interest to monofunctionalize the polymers via CTA moiety, for bioactive functionality conjugation and in the meantime maintain the precisely controlled morphology of the copolymers and the related property. In this work, a newly designed CTA 5-(2-(tert-butoxycarbonylamino) ethylamino)-2-cyano-5-oxopentan-2-yl benzodithioate (t-Boc CPDB) was synthesized and used for the RAFT polymerization of PGMA45-PHPMA120. Subsequently, PGMA45-PHPMA120 copolymers with primary amine, maleimide, and reduced L-glutathione (a tripeptide) monofunctionalized terminals were synthesized via deprotection and conjugation reactions. These monofunctionalized copolymers maintain worm-like morphology and thermo-responsive property in aqueous solution (10% w/v), as confirmed by the transmission electron microscopy (TEM) images, and the observation of the phase transition behavior in between 4 °C and room temperature (~20 °C), respectively. Summarily, a range of thermo-responsive monofunctionalized PGMA45-PHPMA120 diblock copolymer worms were successfully synthesized, which are expected to offer potential biomedical applications, such as in polymer therapeutics, drug delivery, and diagnostics.
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  • 文章类型: Journal Article
    最近,具有高亮度的Mn掺杂半导体纳米晶体(NCs),寿命长,和低能量激发正在出现用于时间分辨发光生物传感/成像。根据我们先前对Mn掺杂的NC的研究,在这项工作中,我们开发了聚(苯乙烯-共-马来酸酐)(PSMA)封装的Mn掺杂的AgZnInS/ZnSNCs作为荚膜多糖(CPS)免疫测定的信号转导,一种表面抗原,也是伯克霍尔德氏菌的生物标志物,它导致一种致命的疾病,称为类lioidosis。为了提高测定灵敏度,对PSMA包封的NC(NC-探针)进行表面处理以促进羧基的存在,这有助于将更多的抗CPS抗体缀合至NC-探针的表面,从而增强生物测定信号。同时,采用NC探针发光的时间分辨读数,以最大程度地减少测定背景自发荧光。两种策略都通过增加信号和降低背景来实质上增强测定信号背景比(或等效地提高测定灵敏度)。分别。通过使用不同的NC探针(有和没有表面处理)和不同的信号读取方法(时间分辨读数和非时间分辨读数)进行和比较免疫测定,事实证明,采用表面处理的NC探针和时间分辨读数的免疫测定比采用非表面处理的NC探针或非时间分辨读数的免疫测定具有更低的检测限(LOD)。此外,获得的LOD与使用辣根过氧化物酶作为信号转导的免疫测定的LOD相当。
    Recently, Mn-doped semiconductor nanocrystals (NCs) with high brightness, long lifetimes, and low-energy excitation are emerging for time-resolved luminescence biosensing/imaging. Following our previous work on Mn-doped NCs, in this work we developed poly(styrene-co-maleic anhydride) (PSMA)-encapsulated Mn-doped AgZnInS/ZnS NCs as signal transducers for immunoassay of capsular polysaccharide (CPS), a surface antigen and also a biomarker of Burkholderia pseudomallei which causes a fatal disease called melioidosis. To enhance the assay sensitivity, a surface treatment for PSMA-encapsulated NCs (NC-probes) was performed to promote the presence of carboxyl groups that help conjugate more anti-CPS antibodies to the surface of NC-probes and thus enhance bioassay signals. Meanwhile, time-resolved reading on the luminescence of NC-probes was adopted to minimize the assay background autofluorescence. Both strategies essentially enhance the assay signal-to-background ratio (or equivalently the assay sensitivity) by increasing the signal and decreasing the background, respectively. Through performing and comparing immunoassays with different NC-probes (with and without surface treatment) and different signal reading methods (time-resolved reading and non-time-resolved reading), it was proven that the immunoassay adopting surface-treated NC-probes and time-resolved reading achieved a lower limit-of-detection (LOD) than the ones adopting non-surface-treated NC-probes or non-time-resolved reading. Moreover, the achieved LOD is comparable to the LOD of immunoassay using enzyme horseradish peroxidase as a signal transducer.
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  • 文章类型: Journal Article
    在应激细胞中检测和捕获聚集的蛋白质组的共价传感器是罕见的。在这里,我们通过在结构上调节GFP发色团并用环氧化物弹头装备它,为聚集的蛋白质构建了一系列共价荧光传感器。其中,P2探针在折叠的蛋白质上选择性地修饰聚集的蛋白质,并打开荧光,如生物化学和质谱结果所证明的。使用不同类型的聚集蛋白质证明了这种基于环氧化物的共价化学的覆盖范围。最后,共价荧光传感器P2允许直接可视化和捕获来自心脏肿瘤小鼠模型的应激心肌细胞和心脏组织样品中的聚集蛋白质组。本文开发的基于环氧化物的共价传感器可用于聚集蛋白质的未来化学蛋白质组学分析以剖析心脏肿瘤学的潜在机制。
    Covalent sensors to detect and capture aggregated proteome in stressed cells are rare. Herein, we construct a series of covalent fluorogenic sensors for aggregated proteins by structurally modulating GFP chromophore and arming it with an epoxide warhead. Among them, P2 probe selectively modifies aggregated proteins over folded ones and turns on fluorescence as evidenced by biochemical and mass spectrometry results. The coverage of this epoxide-based covalent chemistry is demonstrated using different types of aggregated proteins. Finally, the covalent fluorescent sensor P2 allows for direct visualization and capture of aggregated proteome in stressed cardiomyocytes and cardiac tissue samples from a cardio-oncology mouse model. The epoxide-based covalent sensor developed herein may become useful for future chemical proteomics analysis of aggregated proteins to dissect the mechanism underlying cardio-oncology.
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  • 文章类型: Review
    涉及多酶反应的生物合成通常是产生大量重要分子的有效且经济的方法。为了提高生物合成中的产品产量,所涉及的酶可以固定在载体上,以增强酶的稳定性,提高合成效率,提高酶的可回收性。具有三维多孔结构和多功能官能团的水凝胶是有前途的酶固定化载体。在这里,我们综述了基于水凝胶的多酶生物合成系统的最新进展。首先,我们介绍了在水凝胶中固定化酶的策略,包括策略的利弊。然后我们概述了多酶系统在生物合成中的最新应用,包括无细胞蛋白质合成(CFPS)和非蛋白质合成,特别是高附加值的分子。在最后一节,我们讨论了基于水凝胶的多酶系统用于生物合成的未来前景。
    Biosynthesis involving multi-enzymatic reactions is usually an efficient and economic method to produce plentiful important molecules. To increase the product yield in biosynthesis, the involved enzymes can be immobilized to carriers for enhancing enzyme stability, increasing synthesis efficiency and improving enzyme recyclability. Hydrogels with three-dimensional porous structures and versatile functional groups are promising carriers for enzyme immobilization. Herein, we review the recent advances of the hydrogel-based multi-enzymatic system for biosynthesis. First, we introduce the strategies of enzyme immobilization in hydrogel, including the pros and cons of the strategies. Then we overview the recent applications of the multi-enzymatic system for biosynthesis, including cell-free protein synthesis (CFPS) and non-protein synthesis, especially high value-added molecules. In the last section, we discuss the future perspective of the hydrogel-based multi-enzymatic system for biosynthesis.
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  • 文章类型: Journal Article
    纳米酶,具有酶模拟活性和优异的稳定性,引起了广泛的关注。然而,一些固有的缺点,包括分散性差,低选择性,过氧化物酶样活性不足,仍然限制了它的进一步发展。因此,进行了纳米酶和天然酶的创新生物缀合。在氧化石墨烯(GO)的存在下,首先通过溶剂热法合成组氨酸磁性纳米颗粒(H-Fe3O4)。GO负载的H-Fe3O4(GO@H-Fe3O4)表现出优异的分散性和生物相容性,因为GO是载体,并且由于组氨酸的引入而具有出色的过氧化物酶样活性。此外,GO@H-Fe3O4的过氧化物酶样活性的机制是·OH的产生。选择尿酸氧化酶(UAO)作为模型天然酶,并以亲水性聚(乙二醇)作为接头与GO@H-Fe3O4共价连接。UAO能特异性催化尿酸(UA)氧化生成H2O2,新产生的H2O2氧化了无色的3,3',GO@H-Fe3O4催化下的5,5'-四甲基联苯胺(TMB)到蓝色ox-TMB。基于上述级联反应,GO@H-Fe3O4连接的UAO(GHFU)和GO@H-Fe3O4连接的ChOx(GHFC)用于检测血清样品中的UA和牛奶中的胆固醇(CS),分别。基于GHFU的方法对UA具有宽检测范围(5-800μM)和低检测限(1.5μM),基于GHFC的方法对CS具有较宽的检测范围(4-400μM)和较低的检测限(1.13μM)。这些结果表明,所提出的策略在临床检测和食品安全领域具有巨大的潜力。
    Nanozyme, with enzyme-mimicking activity and excellent stability, has attracted extensive attention. However, some inherent disadvantages, including poor dispersion, low selectivity, and insufficient peroxidase-like activity, still limit its further development. Therefore, an innovative bioconjugation of a nanozyme and natural enzyme was conducted. In the presence of graphene oxide (GO), histidine magnetic nanoparticles (H-Fe3O4) were first synthesized by a solvothermal method. The GO-supported H-Fe3O4 (GO@H-Fe3O4) exhibited superior dispersity and biocompatibility because GO was the carrier and possessed outstanding peroxidase-like activity because of the introduction of histidine. Furthermore, the mechanism of the peroxidase-like activity of GO@H-Fe3O4 was the generation of •OH. Uric acid oxidase (UAO) was selected as the model natural enzyme and covalently linked to GO@H-Fe3O4 with hydrophilic poly(ethylene glycol) as a linker. UAO could specifically catalyze the oxidation of uric acid (UA) to generate H2O2, and subsequently, the newly produced H2O2 oxidized the colorless 3,3\',5,5\'-tetramethylbenzidine (TMB) to blue ox-TMB under the catalysis of GO@H-Fe3O4. Based on the above cascade reaction, the GO@H-Fe3O4-linked UAO (GHFU) and GO@H-Fe3O4-linked ChOx (GHFC) were used for the detection of UA in serum samples and cholesterol (CS) in milk, respectively. The method based on GHFU exhibited a wide detection range (5-800 μM) and a low detection limit (1.5 μM) for UA, and the method based on GHFC exhibited a wide detection range (4-400 μM) and a low detection limit (1.13 μM) for CS. These results demonstrated that the proposed strategy had great potential in the field of clinical detection and food safety.
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  • 文章类型: Journal Article
    In recent years, virus-derived self-assembled protein nanoparticles (NPs) have emerged as attractive antigen delivery platforms for developing both preventive and therapeutic vaccines. In this study, we exploited the genetically engineered Norovirus S domain (Nov-S) with SpyCatcher003 fused to the C-terminus to develop a robust, modular, and versatile NP-based carrier platform (Nov-S-Catcher003). The NPs can be conveniently armed in a plug-and-play pattern with SpyTag003-linked antigens. Nov-S-Catcher003 was efficiently expressed in Escherichia coli and self-assembled into highly uniform NPs with a purified protein yield of 97.8 mg/L. The NPs presented high stability at different maintained temperatures and after undergoing differing numbers of freeze-thaw cycles. Tumor vaccine candidates were easily obtained by modifying Nov-S-Catcher003 NPs with SpyTag003-linked tumor antigens. Nov-S-Catcher003-antigen NPs significantly promoted the maturation of bone marrow-derived dendritic cells in vitro and were capable of efficiently migrating to lymph nodes in vivo. In TC-1 and B16F10 tumor-bearing mice, the subcutaneous immunization of NPs elicited robust tumor-specific T-cell immunity, reshaped the tumor microenvironment, and inhibited tumor growth. In the TC-1 model, the NPs even completely abolished established tumors. In conclusion, the Nov-S-Catcher003 system is a promising delivery platform for facilitating the development of NP-based cancer vaccines.
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  • 文章类型: Journal Article
    通过天然蛋白质修饰和翻译后修饰来产生蛋白质多样性和调节蛋白质功能的需求已经引发了用于肽和蛋白质的选择性化学修饰方法的发展。化学生物缀合提供选择性官能化,为化学生物学中的各种应用提供具有所需特性和功能的生物缀合物。医学,和生物材料。肽和蛋白质的赖氨酸残基和N末端存在的氨基由于其良好的亲核性和高的表面暴露而在生物缀合中被广泛研究。在这里,我们回顾了修饰赖氨酸残基和N末端氨基的化学方法的发展,这些方法具有优异的选择性,温和的反应条件,短反应时间,高转化率,生物相容性,和保持蛋白质的完整性。这篇综述是基于化学生物缀合试剂对氨基酸残基的化学选择性和位点选择性组织的,旨在为选择合适的生物缀合方法提供指导。
    The demand for creation of protein diversity and regulation of protein function through native protein modification and post-translational modification has ignited the development of selective chemical modification methods for peptides and proteins. Chemical bioconjugation offers selective functionalization providing bioconjugates with desired properties and functions for diverse applications in chemical biology, medicine, and biomaterials. The amino group existing at the lysine residue and N-terminus of peptides and proteins has been extensively studied in bioconjugation because of its good nucleophilicity and high surface exposure. Herein, we review the development of chemical methods for modification of the amino groups on lysine residue and N-terminus featuring excellent selectivity, mild reaction conditions, short reaction time, high conversion, biocompatibility, and preservation of protein integrity. This review is organized based on the chemoselectivity and site-selectivity of the chemical bioconjugation reagents to the amino acid residues aiming to provide guidance for the selection of appropriate bioconjugation methods.
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