3D structure

三维结构
  • 文章类型: Journal Article
    慢性伤口愈合是临床实践中的主要挑战。二次敷料损伤和抗生素抗性是传统伤口敷料的主要障碍。ResinaDraconis(RD),传统上以粉末形式用于伤口护理的天然树脂,由于缺乏气体渗透性和伤口愈合所需的潮湿环境,现在认为是不合适的。这里,我们通过使用聚己内酯(PCL)/聚环氧乙烷(PEO)构建3D盘绕纤维支架来原位结合RD。由于3D支架的高孔隙率,RD-3D敷料具有良好的膨胀能力,为伤口修复提供渗透性和水分。同时,RD粉末向3D敷料的转化充分证明了RD在快速止血中的能力,杀菌和炎症调节活性。使用压疮和感染伤口模型的体内评估证实了RD-3D敷料在早期伤口愈合中的高疗效。与bFGF相比,在感染的伤口模型中特别有益。进一步的生物学分析表明,白藜芦醇,LoureirinA和LoureirinB,作为RD的潜在生物活性成分,个别有助于伤口愈合的不同方面。总的来说,RD-3D集成敷料代表了一个简单的,具有成本效益和安全的伤口愈合方法,提供了一种替代疗法,用于将医用敷料从长凳转移到床边。本文受版权保护。保留所有权利。
    Chronic wound healing is a major challenge in clinical practice. Secondary dressing damage and antibiotic resistance are the main obstacles for traditional wound dressings. Resina draconis (RD), a natural resin traditionally used in powder form for wound care, is now considered unsuitable due to the lack of gas permeability and moist environment required for wound healing. Here, RD is incorporated in situ by constructing a 3D coiled fibrous scaffold with polycaprolactone/polyethylene oxide. Due to the high porosity of 3D scaffold, the RD-3D dressings have a favorable swelling capacity, providing permeability and moisture for wound repair. Meanwhile, the transformation of RD powder into 3D dressings fully demonstrates capabilities of RD in rapid hemostasis, bactericidal, and inflammation-regulating activities. In vivo evaluations using pressure ulcer and infected wound models confirm the high efficacy of RD-3D dressing in early wound healing, particularly beneficial in the infected wound model compared to recombinant bovine FGF-basic. Further biological analysis shows that resveratrol, loureirin A, and loureirin B, as potentially bioactive components of RD, individually contribute to different aspects of wound healing. Collectively, RD-3D integrated dressings represent a simple, cost-effective, and safe approach to wound healing, providing an alternative therapy for translating medical dressings from bench to bedside.
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  • 文章类型: Journal Article
    新兴的可穿戴植物传感器展示了对植物的生理和微环境信息进行原位测量的能力。然而,当前可穿戴植物传感器的拉伸性和透气性主要由于其二维平面结构而受到限制,干扰植物生长和发育。这里,折纸启发的3D可穿戴传感器已被开发用于植物生长和微气候监测。与2D对应物不同,从理论上讲,3D传感器具有无限高的拉伸性和透气性,源于结构而不是材料。在优化设计中,将它们调整为100%和111.55mgcm-2·h-1。除了可拉伸性和透气性,结构参数也用于控制三维传感器的应变分布,以提高灵敏度和减少干扰。与相应的传感材料集成后,电极,数据采集和传输电路,和一个移动应用程序,生产了一种小型化的传感系统,具有原位和在线监测植物伸长和微气候的能力。作为一个示范,3D传感器戴在南瓜叶子上,可以准确监测叶片伸长和小气候,对植物生长的阻碍可以忽略不计。最后,小气候对植物生长的影响通过分析监测数据来解决。该研究将大大促进可穿戴植物传感器的发展及其在植物表型组学领域的应用。植物-环境界面,智慧农业。
    The emerging wearable plant sensors demonstrate the capability of in-situ measurement of physiological and micro-environmental information of plants. However, the stretchability and breathability of current wearable plant sensors are restricted mainly due to their 2D planar structures, which interfere with plant growth and development. Here, origami-inspired 3D wearable sensors have been developed for plant growth and microclimate monitoring. Unlike 2D counterparts, the 3D sensors demonstrate theoretically infinitely high stretchability and breathability derived from the structure rather than the material. They are adjusted to 100% and 111.55 mg cm-2·h-1 in the optimized design. In addition to stretchability and breathability, the structural parameters are also used to control the strain distribution of the 3D sensors to enhance sensitivity and minimize interference. After integrating with corresponding sensing materials, electrodes, data acquisition and transmission circuits, and a mobile App, a miniaturized sensing system is produced with the capability of in-situ and online monitoring of plant elongation and microclimate. As a demonstration, the 3D sensors are worn on pumpkin leaves, which can accurately monitor the leaf elongation and microclimate with negligible hindrance to plant growth. Finally, the effects of the microclimate on the plant growth is resolved by analyzing the monitored data. This study would significantly promote the development of wearable plant sensors and their applications in the fields of plant phenomics, plant-environment interface, and smart agriculture.
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  • 文章类型: Journal Article
    作为一种具有成本效益的光催化剂,氮化碳(g-C3N4)在解决能源短缺和环境污染方面具有巨大的前景。然而,它的应用受到比表面积低和光生电子-空穴对容易复合等缺点的限制。这项研究介绍了C和O共掺杂的g-C3N4,具有通过简单的一步煅烧过程实现的三维(3D)结构,表现出产氢和土霉素降解的优异光催化活性,以超氧自由基为主要活性物质。我们提出了一种基于系统表征和密度泛函理论计算的合理增强机制。3D结构赋予了相当大的比表面积,增强催化剂的吸附面积和活性位点,同时增强结构稳定性。共掺杂优化了催化剂的能带结构和电导率,促进光生电荷的快速迁移。这些增强的协同作用显著提高了光催化性能。本研究为制备性能优异的双调光催化剂提供了一种方便可行的方法。
    As a cost-effective photocatalyst, carbon nitride (g-C3N4) holds tremendous promise for addressing energy shortages and environmental pollution. However, its application is limited by disadvantages such as low specific surface area and easy recombination of photogenerated electron-hole pairs. This study introduces C and O co-doped g-C3N4 with a three-dimensional (3D) structure achieved through a straightforward one-step calcination process, demonstrating excellent photocatalytic activity of hydrogen production and oxytetracycline degradation, with superoxide radicals as the primary active species. We propose a plausible enhanced mechanism based on systematic characterizations and density functional theory calculations. The 3D structure confers a substantial specific surface area, enhancing both the adsorption area and active sites of catalysts while bolstering structural stability. Co-doping optimizes the band structure and electric conductivity of the catalyst, facilitating rapid migration of photogenerated charges. The synergistic effects of these enhancements significantly elevate the photocatalytic performance. This study presents a convenient and feasible method for the preparation of dual-regulated photocatalysts with outstanding performance.
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  • 文章类型: Journal Article
    背景:本研究旨在利用连续组织切片构建皮肤真皮三维模型,主要目的是获得正常人真皮组织的解剖结构数据。方法:采集正常皮肤组织标本,石蜡包埋,并进行HE染色。使用显微镜捕获皮肤切片的全景图像。使用SIFT和StackReg图像对齐方法对齐组织切片图像,使用OpenCV模块进行分析。Mimics17软件促进了皮肤真皮3D模型的重建,能够计算真皮孔隙率和空隙直径。结果:全景皮肤切片显示真皮纤维和细胞结构的高分辨率分化。SIFT和StackReg图像对齐方法都产生了相似的结果,尽管SIFT方法表现出更大的鲁棒性。实现了三维真皮结构的成功重建。定量分析显示真皮孔隙率为18.96±4.41%,平均孔径为219.29±34.27μm。有趣的是,真皮的孔隙率表现出从乳头状层到第四层的逐渐增加,随后是短暂的下降,然后逐渐增加。平均孔径的分布反映了在孔隙率分布中观察到的图案。结论:利用连续皮肤组织切片重建技术,本研究成功重建了一种高精度的皮肤三维组织结构。真皮组织孔隙率和平均孔径的定量分析为开发仿生组织工程皮肤提供了标准化的数据集。
    Background: This study aims to construct a three-dimensional model of skin dermis utilizing continuous tissue sections, with the primary objective of obtaining anatomical structure data for normal human dermal tissues. Methods: Normal skin tissue specimens were acquired, paraffin-embedded, and subjected to HE staining. Panoramic images of skin sections were captured using a microscope. Tissue section images were aligned using the SIFT and StackReg image alignment methods, with analysis conducted using the OpenCV module. Mimics17 software facilitated the reconstruction of the skin dermal 3D model, enabling the calculation of dermal porosity and the void diameter. Results: Panoramic skin slices exhibited high-resolution differentiation of dermal fibers and cellular structures. Both SIFT and StackReg image alignment methods yielded similar results, although the SIFT method demonstrated greater robustness. Successful reconstruction of the three-dimensional dermal structure was achieved. Quantitative analysis revealed a dermal porosity of 18.96 ± 4.41% and an average pore diameter of 219.29 ± 34.27 μm. Interestingly, the porosity of the dermis exhibited a gradual increase from the papillary layer to the fourth layer, followed by a transient decrease and then a gradual increase. The distribution of the mean pore diameter mirrored the pattern observed in porosity distribution. Conclusion: Utilizing the continuous skin tissue slice reconstruction technique, this study successfully reconstructed a high-precision three-dimensional tissue structure of the skin. The quantitative analysis of dermal tissue porosity and average pore diameter provides a standardized dataset for the development of biomimetic tissue-engineered skin.
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  • 文章类型: Journal Article
    与商用锂离子电池相比,锂金属二次电池(LMB)表现出无与伦比的能量密度。然而,许多问题阻碍了实际应用。作为锂金属和无阳极电池中的一种元素,集电器的作用至关重要。与阴极集电器相比,由于阳极侧通常是热失控和许多其他风险的起点,因此对阳极集电器提出了更多要求,此外,锂金属电池中的阳极很可能决定了全电池的循环寿命。在审查中,我们首先系统地介绍了铜集电器以及相关的问题和挑战,然后我们总结了研究中提到的主要方法,包括具有3D架构的Cu集电器,集流器的亲石改性,Cu集电器上的人造SEI层结构和Cu集电器的碳或聚合物装饰。最后,我们对该领域的未来发展进行了前瞻性评论。
    Comparing with the commercial Li-ion batteries, Li metal secondary batteries (LMB) exhibit unparalleled energy density. However, many issues have hindered the practical application. As an element in lithium metal and anode-free batteries, the role of current collector is critical. Comparing with the cathode current collector, more requirements have been imposed on anode current collector as the anode side is usually the starting point of thermal runaway and many other risks, additionally, the anode in Li metal battery very likely determines the cycling life of full cell. In the review, we first give a systematic introduction of copper current collector and the related issues and challenges, and then we summarize the main approaches that have been mentioned in the research, including Cu current collector with 3D architecture, lithophilic modification of the current collector, artificial SEI layer construction on Cu current collector and carbon or polymer decoration of Cu current collector. Finally, we give a prospective comment of the future development in this field.
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  • 文章类型: Journal Article
    嗅觉受体(ORs)形成最重要的化学感觉受体家族,负责我们在鼻嗅觉上皮中的嗅觉。该受体家族属于A类G蛋白偶联受体(GPCRs)。最近的研究表明,ORs参与鼻外组织的许多非嗅觉生理过程,比如大脑,胰腺,和睾丸,并暗示了它们在各种疾病中失调的可能作用。最近发布的OR51E2和共有OR52的结构也揭示了来自其他A类GPCR成员的ORs的独特性。在这次审查中,我们讨论了这些最新的发展和计算建模工作,以理解未解决的OR的结构特性,这可以指导未来潜在的OR靶向药物发现。
    Olfactory receptors (ORs) form the most important chemosensory receptor family responsible for our sense of smell in the nasal olfactory epithelium. This receptor family belongs to the class A G protein-coupled receptors (GPCRs). Recent research has indicated that ORs are involved in many nonolfactory physiological processes in extranasal tissue, such as the brain, pancreas, and testes, and implies the possible role of their dysregulation in various diseases. The recently released structures of OR51E2 and consensus OR52 have also unveiled the uniqueness of ORs from other class A GPCR members. In this review, we discuss these recent developments and computational modeling efforts toward understanding the structural properties of unresolved ORs, which could guide potential future OR-targeted drug discovery.
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  • 文章类型: Journal Article
    糖原贮积病(GSD)是一组异质性遗传代谢紊乱,发病率为4%-5%。有19种类型的GSD,让诊断成为最大的挑战之一。
    先证者和他的父母被转诊到我们医院进行基因诊断。超声筛查提示肝肿大。一种新的插入变体NM_000292c.1155_1156insT(p。使用三重全外显子组测序(Trio-WES)鉴定了PHKA2基因中的386N>*),这导致386位氨基酸的密码子从天冬酰胺终止(p。386N>*)。使用AlphaFold预测3D突变蛋白结构,结果表明,截短的PHKA2蛋白含有成熟蛋白1,235个氨基酸中的385个。
    我们描述了一个以前未报告的病例,该病例是由一种新的PHKA2变体引起的GSDsIXa型中国男孩。该临床病例有助于了解IXa型GSDs的特征,并扩展与IXa型GSDs相关的基因的变体谱。我们的发现证明了基因检测在GSD诊断中的重要性。
    Glycogen storage diseases (GSDs) are a group of heterogeneous inherited metabolic disorders with an incidence of 4%-5%. There are 19 types of GSDs, making diagnosis one of the greatest challenges.
    The proband and his parents were referred to our hospital for genetic diagnosis. Ultrasound screening suggested hepatomegaly. A novel insertion variant NM_000292 c.1155_1156insT (p. 386N>*) in PHKA2 gene was identified using trio whole exome sequencing (Trio-WES), which resulted in the codon of amino acid 386 from asparagine to termination (p. 386N>*). The 3D mutant protein structure was predicted using AlphaFold, and the results showed that the truncated PHKA2 protein contained 385 of the 1,235 amino acids of the mature protein.
    We describe a previously unreported case of a GSDs IXa type Chinese boy caused by a novel PHKA2 variant. This clinical case contributes to the understanding of the characteristics of GSDs type IXa and expands the variants spectrum of genes related to GSDs type IXa. Our findings demonstrated the significance of genetic testing in the diagnosis of GSDs.
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  • 文章类型: Journal Article
    具有适度杂原子掺杂的三维多孔碳材料已被广泛研究作为有前途的储能电极材料。在这项研究中,我们使用聚合工艺制造了3D交联的壳聚糖-双氰基苯胺-VOSO4水凝胶。高温热解后,获得了3D多孔VOx/N掺杂的碳纳米片杂化物(3DVNCN)。独特的3D多孔骨架,丰富的掺杂元素,在800°C下热解的VOx3DVNCN(3DVNCN-800)的存在确保了出色的电化学性能。3DVNCN-800电极在1A·g-1电流密度下的最大比电容为408.1F·g-1,并且在5000次循环后具有96.8%的电容保持率,具有令人钦佩的循环稳定性。此外,基于3DVNCN-800电极的组装对称超级电容器在600W·Kg-1的功率密度下可提供15.6Wh·Kg-1的最大能量密度。我们的研究证明了制造具有3D结构和大量杂原子掺杂的多孔碳材料的潜在指南。
    Three-dimensional porous carbon materials with moderate heteroatom-doping have been extensively investigated as promising electrode materials for energy storage. In this study, we fabricated a 3D cross-linked chitosan-dicyandiamide-VOSO4 hydrogel using a polymerization process. After pyrolysis at high temperature, 3D porous VOx/N-doped carbon nanosheet hybrids (3D VNCN) were obtained. The unique 3D porous skeleton, abundant doping elements, and presence of VOx 3D VNCN pyrolyzed at 800 °C (3D VNCN-800) ensured excellent electrochemical performance. The 3D VNCN-800 electrode exhibits a maximum specific capacitance of 408.1 F·g-1 at 1 A·g-1 current density and an admirable cycling stability with 96.8% capacitance retention after 5000 cycles. Moreover, an assembled symmetrical supercapacitor based on the 3D VNCN-800 electrode delivers a maximum energy density of 15.6 Wh·Kg-1 at a power density of 600 W·Kg-1. Our study demonstrates a potential guideline for the fabrication of porous carbon materials with 3D structure and abundant heteroatom-doping.
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  • 文章类型: Journal Article
    背景:漆酶是具有广泛工业应用的绿色生物催化剂。高效和特异性漆酶生产者的研究仍然是当务之急。Cerrena物种已被证明是用于漆酶生产的担子菌候选物。尽管已经公开发表了两组Cerrena基因组数据,目前尚无关于C.unicolor漆酶基因家族的全面生物信息学研究报道,特别是关于分析它们的三维(3D)结构和分子与底物的对接,如ABTS和黄曲霉毒素B1(AFB1)。
    结果:在这项研究中,我们对C.unicolor87613的漆酶基因家族进行了全面的全基因组分析。我们鉴定了18种漆酶基因(CuLacs),并使用系统发育分析将其分为三个进化枝。我们表征了这些漆酶,包括它们在重叠群5,6,9,12,15,19,26,27,不同外显子-内含子排列的基因结构,分子量范围从47.89到141.41kDa,酸性pI值,5-15个保守的蛋白质基序,细胞外分泌的信号肽(由13个CuLacs携带)和其他。此外,漆酶启动子中的顺式作用元件分析表明,在不同的环境线索下,CuLac基因家族的转录反应是可调节的和复杂的。此外,转录模式分析显示,CuLac8,12和CuLac2,13是响应铜离子或氧化应激的主要漆酶,分别。最后,我们专注于CuLac蛋白的三维结构分析。具有额外跨膜结构域或特殊序列的七个漆酶特别令人感兴趣。有或没有这些额外序列的每个CuLac蛋白的预测结构显示出改变的相互作用氨基酸残基和结合位点,导致与ABTS和AFB1的亲和力不同。据我们所知,这是第一次讨论额外序列对漆酶对底物亲和力的影响。
    结论:我们的发现为更好地理解C.unicolor87613中的漆酶基因家族提供了可靠的遗传数据,并为CuLac蛋白的分子重新设计以增强其工业应用奠定了基础。
    BACKGROUND: Laccases are green biocatalysts with wide industrial applications. The study of efficient and specific laccase producers remains a priority. Cerrena species have been shown to be promising basidiomycete candidates for laccase production. Although two sets of Cerrena genome data have been publicly published, no comprehensive bioinformatics study of laccase gene family in C. unicolor has been reported, particularly concerning the analysis of their three-dimensional (3D) structures and molecular docking to substrates, like ABTS and aflatoxin B1 (AFB1).
    RESULTS: In this study, we conducted a comprehensive genome-wide analysis of laccase gene family in C. unicolor 87613. We identified eighteen laccase genes (CuLacs) and classified them into three clades using phylogenetic analysis. We characterized these laccases, including their location in contig 5,6,9,12,15,19,26,27, gene structures of different exon-intron arrangements, molecular weight ranging from 47.89 to 141.41 kDa, acidic pI value, 5-15 conserved protein motifs, signaling peptide of extracellular secretion (harbored by 13 CuLacs) and others. In addition, the analysis of cis-acting element in laccase promoters indicated that the transcription response of CuLac gene family was regulatable and complex under different environmental cues. Furthermore, analysis of transcription pattern revealed that CuLac8, 12 and CuLac2, 13 were the predominant laccases in response to copper ions or oxidative stress, respectively. Finally, we focused on the 3D structure analysis of CuLac proteins. Seven laccases with extra transmembrane domains or special sequences were particularly interesting. Predicted structures of each CuLac protein with or without these extra sequences showed altered interacting amino acid residues and binding sites, leading to varied affinities to both ABTS and AFB1. As far as we know, it is the first time to discuss the influence of the extra sequence on laccase\'s affinity to substrates.
    CONCLUSIONS: Our findings provide robust genetic data for a better understanding of the laccase gene family in C. unicolor 87613, and create a foundation for the molecular redesign of CuLac proteins to enhance their industrial applications.
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  • 文章类型: Journal Article
    神经发育障碍(NDD)是一类影响大脑发育和功能的疾病,以无法达到认知为特征,情感,和运动发展的里程碑。NDD的病理是复杂的。最近的一项研究发现,SRRM2基因的变异会导致NDD。然而,遗传条件在NDD的病因中起着最重要的作用。NDD的遗传原因非常不同,导致临床诊断的某些挑战。
    一名患有先天性智力障碍的孕妇来到我们医院进行基因诊断,以预测胎儿的状况。她的母亲和一个兄弟也患有先天性智力障碍。她有一个说话迟缓的女儿。使用全外显子组测序来鉴定该家族的SRRM2基因中的突变(c.1415C>G),该突变导致SRRM2蛋白的第472个氨基酸残基从丝氨酸变为终止。
    我们报道了一个由SRRM2基因变异引起的常染色体显性遗传病家族。产前诊断可以帮助患有这种遗传性疾病的患者拥有健康的后代。
    Neurodevelopmental disorders (NDDs) are a class of disorders affecting brain development and function, characterized by an inability to reach cognitive, emotional, and motor developmental milestones. The pathology of NDDs is complex. A recent study found that variants in the SRRM2 gene cause NDDs. However, genetic conditions play the most important role in the etiology of NDD. The genetic causes of NDD are extremely heterogeneous, leading to certain challenges in clinical diagnosis.
    A pregnant woman with congenital intelligence disorder came to our hospital for genetic diagnosis to predict the status of her fetus. Her mother and a brother also suffer from congenital intelligence disorder. She has a daughter with speech delay. Whole exome sequencing was used to identify a mutation (c.1415C>G) in the SRRM2 gene of this family that resulted in a change in the 472nd amino acid residue of the SRRM2 protein from serine to terminated.
    We report a family with an autosomal dominant genetic disorder caused by variants in the SRRM2 gene causing NDDs. Prenatal diagnosis can help patients with this genetic disorder to have healthy offspring.
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