symbiosis

共生
  • 文章类型: Journal Article
    强制性蚂蚁-植物共生通常似乎是特定蚂蚁谱系内的单一进化转变;然而,一旦自然史观察得到分子系统发育的补充,就可以揭示收敛。这里,我们描述了在蚂蚁-植物共生系统中趋同进化的一个显著例子。独家树栖,Myrmelachista物种可以是在几种植物物种中筑巢或强制共生的广义机会主义者,一组狭窄的植物物种的活茎巢。从南美北部和整个中美洲都知道Myrmelachista中的专业化实例。在中美洲,各种各样的专家辐射占据了低地雨林的林下小树。专家的形态和行为一致性表明它们形成了单系组合,在单一专业化起源后实现多元化。使用超保守元素系统基因组学和祖先状态重建,我们表明,从机会主义到强制性共生的转变是在南美和中美洲独立进化的。此外,我们的分析支持了一个显著的中美洲辐射趋同的案例,有两个独立进化的专家分支,几乎同时产生于上新世晚期推定的机会主义祖先。复杂表型的这种重复进化表明,从机会主义者到专家的特质转变背后的类似机制,产生关于推动专业化的选择性力量的进一步问题。
    Obligatory ant-plant symbioses often appear to be single evolutionary shifts within particular ant lineages; however, convergence can be revealed once natural history observations are complemented with molecular phylogenetics. Here, we describe a remarkable example of convergent evolution in an ant-plant symbiotic system. Exclusively arboreal, Myrmelachista species can be generalized opportunists nesting in several plant species or obligately symbiotic, live-stem nesters of a narrow set of plant species. Instances of specialization within Myrmelachista are known from northern South America and throughout Middle America. In Middle America, a diverse radiation of specialists occupies understory treelets of lowland rainforests. The morphological and behavioural uniformity of specialists suggests that they form a monophyletic assemblage, diversifying after a single origin of specialization. Using ultraconserved element phylogenomics and ancestral state reconstructions, we show that shifts from opportunistic to obligately symbiotic evolved independently in South and Middle America. Furthermore, our analyses support a remarkable case of convergence within the Middle American radiation, with two independently evolved specialist clades, arising nearly simultaneously from putative opportunistic ancestors during the late Pliocene. This repeated evolution of a complex phenotype suggests similar mechanisms behind trait shifts from opportunists to specialists, generating further questions about the selective forces driving specialization.
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  • 文章类型: Journal Article
    在数字创新生态系统中,生态系统成员之间形成的共生模式不仅关系到他们的生存和发展,也影响着生态系统的共生演化机制。基于共生理论,本研究首先探讨了三类群体核心企业的进化均衡策略及其稳定性,数字平台,和大学研究所-然后使用数值模拟和案例研究来探索数字创新生态系统的共生演化机制。结果表明:第一,数字创新生态系统是三类种群在不同共生模式下形成不同共生关系并进行共生活动的复杂适应系统,比如价值共同创造,来表征独特的共生进化结构。第二,在这个生态系统中,种群间不同共生系数的组合值所形成的共生关系决定了共生进化的结果。第三,数字创新生态系统演化的理想方向是互利共生关系。因此,种群之间的共生关系应尽可能转化为互利的共生关系。本研究通过阐明数字创新生态系统的共生演化机制,做出了理论贡献。为我国数字创新生态系统中各利益相关方的数字创新合作提供了对策建议。
    In the digital innovation ecosystem, the symbiosis mode formed between ecosystem members not only relates to their survival and development but also affects the ecosystem\'s symbiosis evolution mechanism. Based on symbiosis theory, this study first explores the evolutionary equilibrium strategy and its stability for three types of populations-core enterprises, digital platforms, and university research institutes-and then uses numerical simulation and a case study to explore the symbiotic evolution mechanism of the digital innovation ecosystem. The results show that: First, the digital innovation ecosystem is a complex adaptive system in which the three types of populations form different symbiotic relationships under different symbiotic modes and conduct symbiotic activities, such as value co-creation, to characterize the unique symbiotic evolutionary structure. Second, in this ecosystem, the symbiotic relationship formed by the combined values of different symbiotic coefficients between populations determines the outcome of symbiotic evolution. Third, the ideal direction of the evolution of the digital innovation ecosystem is a mutually beneficial symbiotic relationship. Thus, the symbiotic relationship between populations should be transformed into a mutually beneficial symbiotic relationships as much as possible. This study makes theoretical contributions by shedding light on the symbiotic evolution mechanism of the digital innovation ecosystem. It also offers countermeasures for the digital innovation cooperation of various stakeholders in China\'s digital innovation ecosystem.
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  • 文章类型: Journal Article
    多元主义被认为在热带地区比温带地区更为普遍,因此可能在产生和维持低纬度地区的高物种丰富度方面发挥重要作用。然而,关于互惠对纬度多样性梯度的影响的结果是混合的,很少有实证研究对温带和热带地区进行抽样。我们调查了与豆科植物Chamaecristanictitans相关的共生微生物群落中是否存在纬度多样性梯度。我们在纬度梯度(38.64-8.68°N)上从结节和植物根部周围的土壤中采样了细菌DNA。使用16SrRNA序列数据,我们确定了许多非根瘤菌种在C.nictitans结节内,不能形成结节或固定氮。根瘤群落的非根瘤菌部分的物种丰富度向低纬度增加,而根瘤菌群落则没有。土壤中的微生物群落不能有效预测结节内部的非根瘤菌群落,表明寄主选择对于构造结节中的非根瘤菌群落很重要。接下来,我们在温室实验中对三种非根瘤菌菌株的存在进行了工厂操作,发现非根瘤菌菌株与根瘤菌的共同接种对根瘤数量有边际影响,对植物生长没有影响。我们的结果表明,这些非根瘤菌细菌可能是共生物种,可从与宿主的结合中受益,但对宿主适应性是中性的。总的来说,我们的研究表明,温带C.nictitans植物与非根瘤菌群落的联系更具选择性,可能是由于纬度之间土壤氮的差异。
    Mutualism is thought to be more prevalent in the tropics than temperate zones and may therefore play an important role in generating and maintaining high species richness found at lower latitudes. However, results on the impact of mutualism on latitudinal diversity gradients are mixed, and few empirical studies sample both temperate and tropical regions. We investigated whether a latitudinal diversity gradient exists in the symbiotic microbial community associated with the legume Chamaecrista nictitans. We sampled bacteria DNA from nodules and the surrounding soil of plant roots across a latitudinal gradient (38.64-8.68 °N). Using 16S rRNA sequence data, we identified many non-rhizobial species within C. nictitans nodules that cannot form nodules or fix nitrogen. Species richness increased towards lower latitudes in the non-rhizobial portion of the nodule community but not in the rhizobial community. The microbe community in the soil did not effectively predict the non-rhizobia community inside nodules, indicating that host selection is important for structuring non-rhizobia communities in nodules. We next factorially manipulated the presence of three non-rhizobia strains in greenhouse experiments and found that co-inoculations of non-rhizobia strains with rhizobia had a marginal effect on nodule number and no effect on plant growth. Our results suggest that these non-rhizobia bacteria are likely commensals-species that benefit from associating with a host but are neutral for host fitness. Overall, our study suggests that temperate C. nictitans plants are more selective in their associations with the non-rhizobia community, potentially due to differences in soil nitrogen across latitude.
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  • 文章类型: Journal Article
    金合欢是世界上最具侵略性的入侵者之一,其入侵在火灾后得到加强,地中海气候中常见的扰动。作为一个豆类,该物种与根瘤内的固氮细菌建立共生关系;然而,总体微生物多样性仍不清楚。在这项研究中,我们通过组织学和下一代测序解决了根瘤的结构和生物多样性,针对细菌和真菌的16S和25S-28SrDNA基因,分别。我们想评估火对1岁树苗根瘤的影响,通过比较未燃烧和燃烧的地点。我们发现,尽管具有相同的总体结构,火灾事件后,结节有更多的感染细胞和更多的淀粉积累。在未感染细胞中积累的淀粉可能是微生物群的碳源。关于多样性,缓生根瘤菌在两个地点都占主导地位(约77%),暗示它是优先合作伙伴,其次是Tardiphaga(约9%),一种非根瘤菌,和协同球菌,蓝细菌(约5%)。然而,在被烧毁的地方,额外的固氮菌包括在前10个属中,强调这一过程的重要性。在分枝杆菌群中发现了主要差异,这两个地点都是多种多样的,包括主要被描述为植物内生菌的属。在烧伤部位的结节中,Coniochaeta占主导地位(69%),暗示了它作为共生协会促进者的作用。我们强调结节中存在大量细菌和真菌群落,表明结瘤不限于固氮。因此,这种微生物组可能参与促进长叶A.
    Acacia longifolia is one of the most aggressive invaders worldwide whose invasion is potentiated after a fire, a common perturbation in Mediterranean climates. As a legume, this species establishes symbioses with nitrogen-fixing bacteria inside root nodules; however, the overall microbial diversity is still unclear. In this study, we addressed root nodules\' structure and biodiversity through histology and Next-Generation Sequencing, targeting 16S and 25S-28S rDNA genes for bacteria and fungi, respectively. We wanted to evaluate the effect of fire in root nodules from 1-year-old saplings, by comparing unburnt and burnt sites. We found that although having the same general structure, after a fire event, nodules had a higher number of infected cells and greater starch accumulation. Starch accumulated in uninfected cells can be a possible carbon source for the microbiota. Regarding diversity, Bradyrhizobium was dominant in both sites (ca. 77%), suggesting it is the preferential partner, followed by Tardiphaga (ca. 9%), a non-rhizobial Alphaproteobacteria, and Synechococcus, a cyanobacteria (ca. 5%). However, at the burnt site, additional N-fixing bacteria were included in the top 10 genera, highlighting the importance of this process. Major differences were found in the mycobiome, which was diverse in both sites and included genera mostly described as plant endophytes. Coniochaeta was dominant in nodules from the burnt site (69%), suggesting its role as a facilitator of symbiotic associations. We highlight the presence of a large bacterial and fungal community in nodules, suggesting nodulation is not restricted to nitrogen fixation. Thus, this microbiome can be involved in facilitating A. longifolia invasive success.
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  • 文章类型: Journal Article
    生物和非生物因素影响地衣共生中真菌-藻类配对的形成。然而,这些关联的具体决定因素,特别是当涉及远缘真菌时,仍然知之甚少。在这项研究中,我们调查了不同驱动因素对分类学上不同的苔藓真菌与其树状共生伙伴之间的关联模式的影响。我们从四个生物群落中收集了200个样本,并鉴定了41种地衣真菌,将它们与16种树状绿藻相关联,其中62%以前未报告。真菌和藻类伴侣的物种身份对共生的结果影响最大,与气候变量和地理距离等非生物因素相比。在温带地区观察到一些明显的特定关联;然而,干旱地区的嵌套值低于寒冷地区,极地,根据相互作用网络分析,温带地区。共生分析显示,树状藻类和相关真菌之间存在一致的系统发育,表明倾向于拒绝随机关联。导致观察到的系统发育模式的主要进化机制是藻类伴侣的“丢失”和“无法发散”。鉴于Trebouxia相关真菌,这项研究拓宽了我们对真菌-藻类共生模式的认识。
    Biotic and abiotic factors influence the formation of fungal-algal pairings in lichen symbiosis. However, the specific determinants of these associations, particularly when distantly related fungi are involved, remain poorly understood. In this study, we investigated the impact of different drivers on the association patterns between taxonomically diverse lichenized fungi and their trebouxioid symbiotic partners. We collected 200 samples from four biomes and identified 41 species of lichenized fungi, associating them with 16 species of trebouxioid green algae, of which 62% were previously unreported. The species identity of both the fungal and algal partners had the most significant effect on the outcome of the symbiosis, compared to abiotic factors like climatic variables and geographic distance. Some obviously specific associations were observed in the temperate zone; however, the nestedness value was lower in arid regions than in cold, polar, and temperate regions according to interaction network analysis. Cophylogenetic analyses revealed congruent phylogenies between trebouxioid algae and associated fungi, indicating a tendency to reject random associations. The main evolutionary mechanisms contributing to the observed phylogenetic patterns were \"loss\" and \"failure to diverge\" of the algal partners. This study broadens our knowledge of fungal-algal symbiotic patterns in view of Trebouxia-associated fungi.
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  • 文章类型: Journal Article
    背景:夏威夷短尾鱿鱼Euprymnacoscoopes与细菌弧菌之间的共生关系可作为研究促进动物-细菌共生初始形成的分子机制的模型。该系统的研究通常取决于刚孵化的大肠杆菌,但是在海产养殖设施中促进孵化生产的畜牧业因素仍然被低估。在这里,我们报告了E.scolines对交配频率降低的反应的繁殖性能。
    结果:一个动物队列在海水养殖设施中维持107天,将雌性分配到对照组(每14天交配一次)或实验组(每21天交配一次)。两组之间的生存率没有差异,产卵的数量,或孵化计数。每个组都有多名女性,他们的生殖能力很强,即,他们在被囚禁时产生了8个以上的卵。对单个卵离合器的每日孵化计数分布的检查显示,离合器之间的孵化模式存在显着变化,这与配合频率无关。最后,对孵化生产的评估显示,该队列生产的总孵化中有93.5%来自最初70天内产下的卵。
    结论:这些结果表明,较低的交配频率不会阻碍孵化的生产。此外,卵离合器之间孵化产量的变化为大肠杆菌作为微生物学研究的实验动物的繁殖性能提供了新的见解。
    BACKGROUND: The symbiosis between the Hawaiian bobtail squid Euprymna scolopes and bacterium Vibrio fischeri serves as a model for investigating the molecular mechanisms that promote the initial formation of animal-bacterial symbioses. Research with this system frequently depends on freshly hatched E. scolopes, but the husbandry factors that promote hatchling production in a mariculture facility remain underreported. Here we report on the reproductive performance of E. scolopes in response to decreased mating frequency.
    RESULTS: One animal cohort was maintained in a mariculture facility for 107 days, with females assigned to either a control group (mating once every 14 days) or an experimental group (mating once every 21 days). No differences between the groups were observed in survival, the number of egg clutches laid, or hatchling counts. Each group featured multiple females that were hyper-reproductive, i.e., they generated more than 8 egg clutches while in captivity. Examination of the distributions for daily hatchling counts of individual egg clutches revealed significant variation in the hatching patterns among clutches that was independent of mating frequency. Finally, an assessment of hatchling production showed that 93.5% of total hatchlings produced by the cohort were derived from egg clutches laid within the first 70 days.
    CONCLUSIONS: These results suggest a lower mating frequency does not impede hatchling production. Furthermore, the variation in hatchling production among egg clutches provides new insight into the reproductive performance of E. scolopes as a lab animal for microbiology research.
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  • 文章类型: Journal Article
    难以获得资源和日益增加的环境问题促使工业制造企业建立共生网络。共生关系的识别有助于工业活动的更可持续发展。然而,在工业园区经营的业务按部门划分为多元化。为了在工业园区建立可持续的共生网络,工业园区各部门的共生关系应分别评估。因此,共生网络的安装过程将更容易和更可持续。在这种情况下,这项研究旨在通过提出一种评估共生潜力的创新方法,优先考虑建立共生网络的部门。为此,确定了影响共生网络建立的实施过程标准。采用多准则决策方法进行求解。考虑到过程中的不确定性,采用模糊多准则决策方法。因此,为了在工业园区中建立共生网络,提出了一种决策模型来确定优先部门。根据多准则决策方法获得的结果,评估废物的企业数量,也就是说,浪费的客户数量,已被确定为具有最高重要性的标准。在评估替代方案时,铸造部门被选为优先事项。其次是石油和化工行业,这是第二个选择。
    Difficulty in accessing resources and increasing environmental concerns encourage industrial manufacturing enterprises to establish a symbiosis network. The identification of symbiotic relationships contributes to the more sustainable development of industrial activities. However, businesses operating in industrial parks are diversified by sector. In order to establish a sustainable symbiosis network in industrial parks, the symbiotic relations of each sector in industrial parks should be evaluated separately. Thus, the installation process of the symbiosis network will be easier and more sustainable. In this context, this study aims to prioritize the sector in which a symbiosis network will be established by presenting an innovative approach for the evaluation of symbiosis potentials. For this purpose, criteria for the implementation process affecting the establishment of the symbiosis network were determined. Multi-criteria decision-making methods were used to solve the problem. Considering the uncertainties in the process, fuzzy multi-criteria decision-making methods were used. As a result, a decision-making model has been proposed to determine the priority sector in order to establish a symbiosis network in industrial parks. According to the results obtained with the multi-criteria decision-making methods, the number of enterprises that will evaluate the waste, that is, the number of customers with waste, has been determined as the criterion with the highest level of importance. While evaluating the alternatives, the casting sector was chosen as a priority. This sector is followed by the petro and chemical sector as the second alternative.
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  • 文章类型: Journal Article
    本研究介绍了埃米沃沃生态公园的发展过程,位于诺特奇山谷地区(波兰),是波兰最大的农业食品联盟的一部分,从最初的小型废物管理公司到最终的使用工业共生方法的生态工业园区。生态园中应用的工业共生促进了一种商业模式,该模式涵盖了从动物饲料制备植物生长开始的产品的整个生命周期,畜牧业,肉制品,从动物粪便中生产肉骨粉,以及使用猪粪作为肥料。生态公园模型以覆盖产品整个生命周期的材料和能量连接流系统的形式呈现。从谷物种植,通过工业饲料的生产,以及用于生产肉类产品的家禽和生猪养殖。使用的解决方案包括通过现有流程的现代化来防止环境污染,实施新技术,减少废物及其再利用,回收,以及材料和能源的回收,用废物代替原材料,以及废物的热处理及其作为生物燃料的用途。本案例研究允许分析组织和技术关键战略活动,使浪费,包括危险废物,转化为有价值的材料和能源。这些活动改变了通过价值链的物质和能量流动系统,以实现根据循环经济方法允许对废物进行有利可图的管理的目标,并指出了在实施工业共生商业模式方面支持供应链修改的方法根据其与可持续发展的关系,清洁生产,和循环经济模式。EIP每年利用300,000吨肉类废物,生产11万吨肉骨粉生物燃料,使用12万吨猪粪作为肥料,生产460,000GJ生物能源,消除了92,000吨二氧化碳排放。
    This study presents the developing process of the Śmiłowo Eco-Park, located in the Noteć valley region (Poland), is a part of the biggest Polish agri-food consortium, from its initial small waste management company to its final structure as an eco-industrial park using industrial symbiosis methods. The industrial symbiosis applied in the Eco-park promotes a business model which covers the whole life cycle of the products starting from the plant growing by animal feed preparation, livestock breeding, meat preparations, meat-bone meal production from animal waste, and the use of pig slurry as a fertilizer. The Eco-park model is presented in the form of a system of connected stream flows of materials and energy covering the full lifecycle of products, from cereal cultivation, through the production of industrial feed, and poultry and pig breeding for the production of meat products. The solutions used include the prevention of environmental pollution through the modernization of existing processes, implementation of new technologies, reduction of waste and its reuse, recycling, and recovery of materials and energy, the substitution of raw materials with waste, and thermal treatment of waste and its use as biofuel. This case study allows for analyses of the organizational and technical key strategic activities which enable waste, including hazardous waste, to be transformed into valuable materials and energy. These activities have modified the system of material and energy flows through the value chain to realize the goal of allowing profitable management of waste according to circular economy methods and also indicates methods of supporting modifications of supply chains in terms of implementation of the industrial symbiosis business model according to its relationship with sustainable development, cleaner production, and circular economy models. EIP Śmiłowo annually utilizes 300,000 t meat waste, produces 110,000 t meat bone meal biofuel, uses 120,000 t of pig manure as fertilizers, produces 460,000 GJ bioenergy, eliminates 92,000 t CO2 emissions.
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  • 文章类型: Journal Article
    边缘性人格障碍(BPD)是一种严重的精神疾病,其特征是情感不稳定,认知,和人际领域。BPD与几种精神障碍同时发生,与精神病理学(p因子)和人格障碍(g-PD)的一般因素呈正相关。因此,一些研究人员声称BPD是p的标记,因此,BPD的核心特征反映了精神病理学的普遍责任。这一论断在很大程度上源于横断面证据,迄今为止没有研究阐明BPD和p之间的发育关系。本研究旨在通过研究两个相反框架的预测来调查BPD特征和p因子的发展:动态共生理论和共同原因理论。对竞争理论进行了评估,以确定哪种观点最能说明从青春期到成年的BPD和p的关系。数据来自匹兹堡女孩研究(PGS;N=2,450),包括14至21岁的BPD和其他内在化和外在化指数的年度自我评估。使用随机截距交叉滞后面板模型(RI-CLPM)和网络模型对理论进行了检验。结果表明,动态互惠主义和共同原因理论都不能完全解释BPD和p之间的发展关系。相反,这两个框架都得到了部分支持,发现p能强烈预测几个年龄段BPD的人内变化。(PsycInfo数据库记录(c)2023年APA,保留所有权利)。
    Borderline personality disorder (BPD) is a serious mental illness characterized by instability in affective, cognitive, and interpersonal domains. BPD co-occurs with several mental disorders and has robust, positive associations with the general factors of psychopathology (p-factor) and personality disorders (g-PD). Consequently, some researchers have purported BPD to be a marker of p, such that the core features of BPD reflect a generalized liability to psychopathology. This assertion has largely stemmed from cross-sectional evidence and no research to date has explicated the developmental relationships between BPD and p. The present study aimed to investigate the development of BPD traits and the p-factor by examining predictions of two opposing frameworks: dynamic mutualism theory and the common cause theory. Competing theories were evaluated to determine which perspective best accounted for the relationship of BPD and p from adolescence into young adulthood. Data were drawn from the Pittsburgh Girls Study (PGS; N = 2,450) and included yearly self-assessments of BPD and other internalizing and externalizing indices from ages 14 to 21. Theories were examined using random-intercept cross-lagged panel models (RI-CLPMs) and network models. Results indicated that neither dynamic mutualism nor the common cause theory could fully explain the developmental relations between BPD and p. Instead, both frameworks were partially supported, with p found to strongly predict within-person change in BPD at several ages. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
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  • 文章类型: Journal Article
    随着发展中地区城市化进程的不断推进,由于经济发展不平衡和环境问题日益严重,整合区域废物处理能力具有挑战性。本研究提出了一种多维共生整合的垃圾处理能力。应用中国长江三角洲(YRD)的数据,我们首先探索城市之间的废物流动和相互作用,以确定基于增强重力模型的城市间合作的可能性。然后,我们采用社交网络分析将废物处理协作网络中的城市按功能分类为子组。最后,我们提出了自上而下的废物处理共生网络框架。我们的发现表明,根据废物密度和处置效率,YRD城市可以分为四种类型:高-高,低-高,低-低,高-低。我们还确定了三种类型的城市间协作关系:高密度和高效城市之间,在高密度城市之间,高效城市之间。城市子组可以分为“高效集群”,\"\"高密度集群,\"和\"集线器群集,“这为废物回收行业的共享或互补城市共生铺平了道路。子组之间的角色划分可以实现城市群内的共生活动。本文扩展了工业共生文献的空间范围,对发展中国家废物管理向循环经济过渡具有实际意义。
    With the ongoing urbanization in developing regions, integrating regional waste disposal capability is challenging due to unbalanced economic development and rising environmental issues. This research proposed a multi-dimensional symbiotic integration of waste disposal capability. Applying data from the Yangtze River Delta (YRD) in China, we first explore the waste flows and interactions between cities to identify the possibility of inter-municipal collaboration based on the augmented gravity model. We then employ social network analysis to categorize the cities in the collaborative network of waste disposal into subgroups by functionalities. Finally, we proposed the top-down framework of symbiotic networks for waste disposal. Our findings indicate that YRD cities can be classified into four types according to their waste density and disposal efficiency: High-High, Low-High, Low-Low, and High-Low. We also identify three types of inter-municipal collaborative relationships: between high-density and high-efficiency cities, between high-density cities, and between high-efficiency cities. The city subgroups can be categorized into \"high-efficiency clusters,\" \"high-density clusters,\" and \"hub clusters,\" which pave the way for a shared or complementary urban symbiosis in the waste recycling industry. The division of roles among subgroups enables symbiotic activities within the city cluster. This paper extends the spatial scope of industrial symbiosis literature and has practical implications for transitioning to a circular economy in waste management of developing countries.
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