polygenic risk scores

多基因风险评分
  • 文章类型: Journal Article
    在双相情感障碍中,在情绪发作期间观察到睡眠模式和活动的昼夜节律异常,但也持续在津津乐道。已经提出了情绪障碍与睡眠模式异常和活动昼夜节律之间的共有脆弱性。这项探索性研究调查了双相情感障碍多基因风险评分与重度抑郁障碍之间的关联。活动记录对睡眠模式的估计,和活动的昼夜节律在62名患有双相情感障碍的人的样本中。多基因风险评分-双相情感障碍和多基因风险评分-重度抑郁障碍被计算为三个严格的显著性阈值。使用主成分分析将数据缩减应用于将活动数据测量汇总为维度。较高的多基因风险评分-重度抑郁症与更多的零散睡眠有关,而较高的多基因风险评分-双相情感障碍与活动的昼夜节律高峰较晚有关。这些结果在调整了年龄后仍然很重要,性别,双相情感障碍亚型,身体质量指数,目前的抑郁症状,目前的烟草使用,和列入时规定的药物,但不是在多次测试校正后。总之,严重抑郁症和双相情感障碍的遗传脆弱性可能与睡眠模式和活动昼夜节律的不同异常有关。结果应在较大且独立的样品中重复。
    In bipolar disorders, abnormalities of sleep patterns and of circadian rhythms of activity are observed during mood episodes, but also persist during euthymia. Shared vulnerabilities between mood disorders and abnormalities of sleep patterns and circadian rhythms of activity have been suggested. This exploratory study investigated the association between polygenic risk scores for bipolar disorder and major depressive disorder, actigraphy estimates of sleep patterns, and circadian rhythms of activity in a sample of 62 euthymic individuals with bipolar disorder. The polygenic risk score - bipolar disorder and polygenic risk score - major depressive disorder were calculated for three stringent thresholds of significance. Data reduction was applied to aggregate actigraphy measures into dimensions using principal component analysis. A higher polygenic risk score - major depressive disorder was associated with more fragmented sleep, while a higher polygenic risk score - bipolar disorder was associated with a later peak of circadian rhythms of activity. These results remained significant after adjustment for age, sex, bipolar disorder subtype, body mass index, current depressive symptoms, current tobacco use, and medications prescribed at inclusion, but not after correction for multiple testing. In conclusion, the genetic vulnerabilities to major depression and to bipolar disorder might be associated with different abnormalities of sleep patterns and circadian rhythms of activity. The results should be replicated in larger and independent samples.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    目的:糖尿病的代谢危险因素和血浆生物标志物在临床糖尿病诊断之前已经显示出变化。然而,这些标记仅覆盖了与疾病相关的一小部分分子生物标志物.在这项研究中,我们旨在分析一组更全面的分子生物标志物,并探讨它们与糖尿病发病的时间关联.
    方法:我们在丹麦献血者研究(DBDS)中对性别和出生年份分布相匹配的324例糖尿病患者和359例非糖尿病患者进行了长达11年随访的三个连续样本中测量的54种蛋白质和171种代谢物和脂蛋白颗粒的靶向分析。我们使用线性混合效应模型来识别糖尿病诊断前的时间变化,对于任何意外糖尿病诊断或特别是1型和2型糖尿病诊断。我们进一步进行了线性和非线性特征选择,在生物标志物池中增加28项多基因风险评分。我们测试了具有最高变量重要性的生物标志物的事件时间预测增益,与选定的临床协变量和血浆葡萄糖进行比较。
    结果:我们确定了2种蛋白质和16种代谢物和脂蛋白颗粒,其水平在糖尿病诊断前发生了时间变化,并且在FDR调整后估计的边缘均值具有统计学意义。其中16个以前没有描述过。此外,在糖尿病诊断之前的几年中,有75种生物标志物始终较高或较低。我们确定了1型糖尿病的单一时间生物标志物,IL-17A/F,与多种其他自身免疫性疾病相关的细胞因子。纳入12种生物标志物改善了糖尿病诊断的10年预测(即受试者工作曲线下的面积从0.79增加到0.84)。与单独的临床信息和血浆葡萄糖进行比较。
    结论:在糖尿病诊断前几年,血浆中出现了系统性分子变化。一个特定的生物标志物子集显示出不同的,时间依赖的模式,提供作为糖尿病发病的预测标志物的潜力。值得注意的是,这些生物标志物在1型糖尿病和2型糖尿病之间显示出共同和不同的模式.独立复制后,我们的发现可用于开发新的临床预测模型.
    OBJECTIVE: Metabolic risk factors and plasma biomarkers for diabetes have previously been shown to change prior to a clinical diabetes diagnosis. However, these markers only cover a small subset of molecular biomarkers linked to the disease. In this study, we aimed to profile a more comprehensive set of molecular biomarkers and explore their temporal association with incident diabetes.
    METHODS: We performed a targeted analysis of 54 proteins and 171 metabolites and lipoprotein particles measured in three sequential samples spanning up to 11 years of follow-up in 324 individuals with incident diabetes and 359 individuals without diabetes in the Danish Blood Donor Study (DBDS) matched for sex and birth year distribution. We used linear mixed-effects models to identify temporal changes before a diabetes diagnosis, either for any incident diabetes diagnosis or for type 1 and type 2 diabetes mellitus diagnoses specifically. We further performed linear and non-linear feature selection, adding 28 polygenic risk scores to the biomarker pool. We tested the time-to-event prediction gain of the biomarkers with the highest variable importance, compared with selected clinical covariates and plasma glucose.
    RESULTS: We identified two proteins and 16 metabolites and lipoprotein particles whose levels changed temporally before diabetes diagnosis and for which the estimated marginal means were significant after FDR adjustment. Sixteen of these have not previously been described. Additionally, 75 biomarkers were consistently higher or lower in the years before a diabetes diagnosis. We identified a single temporal biomarker for type 1 diabetes, IL-17A/F, a cytokine that is associated with multiple other autoimmune diseases. Inclusion of 12 biomarkers improved the 10-year prediction of a diabetes diagnosis (i.e. the area under the receiver operating curve increased from 0.79 to 0.84), compared with clinical information and plasma glucose alone.
    CONCLUSIONS: Systemic molecular changes manifest in plasma several years before a diabetes diagnosis. A particular subset of biomarkers shows distinct, time-dependent patterns, offering potential as predictive markers for diabetes onset. Notably, these biomarkers show shared and distinct patterns between type 1 diabetes and type 2 diabetes. After independent replication, our findings may be used to develop new clinical prediction models.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:已经报道了代谢状态和代谢变化与心血管结局风险之间的关联。然而,遗传易感性在这些关联背后的作用仍未被探索.我们的目的是检查代谢状态,代谢转变,和遗传易感性共同影响不同体重指数(BMI)类别的心血管结局和全因死亡率.
    方法:在我们对英国生物库的分析中,基线时,我们共纳入481,576名参与者(平均年龄:56.55岁;男性:45.9%).代谢健康(MH)状态定义为存在<3个异常成分(腰部情况、血压,血糖,甘油三酯,和高密度脂蛋白胆固醇)。正常体重,超重,肥胖定义为18.5≤BMI<25kg/m2,25≤BMI<30kg/m2,BMI≥30kg/m2。使用多基因风险评分(PRS)估计遗传易感性。进行Cox回归以评估代谢状态的关联,代谢转变,和PRS与不同BMI类别的心血管结局和全因死亡率。
    结果:在14.38年的中位随访中,31,883(7.3%)全因死亡,8133例(1.8%)心血管疾病(CVD)死亡,记录了67,260例(14.8%)CVD病例。在那些具有高PRS的人中,与代谢不健康的肥胖人群相比,代谢健康超重人群的全因死亡率(风险比[HR]0.70;95%置信区间[CI]0.65,0.76)和CVD死亡率(HR0.57;95%CI0.50,0.64)风险最低。在中度和低度PRS组中,有益的关联似乎更大。代谢健康正常体重的个体患CVD的风险最低(HR0.54;95%CI0.51,0.57)。此外,不同BMI类别的代谢状态和PRS与心血管结局和全因死亡率的负相关在65岁以下的个体中更为显著(P交互作用<0.05).此外,在BMI类别中,观察到代谢转变和PRS对这些结局的综合保护作用.
    结论:MH状态和低PRS与所有BMI类别的不良心血管结局和全因死亡率的较低风险相关。这种保护作用在65岁以下的个体中尤其明显。需要进一步的研究来确认不同人群的这些发现,并调查所涉及的潜在机制。
    BACKGROUND: Associations between metabolic status and metabolic changes with the risk of cardiovascular outcomes have been reported. However, the role of genetic susceptibility underlying these associations remains unexplored. We aimed to examine how metabolic status, metabolic transitions, and genetic susceptibility collectively impact cardiovascular outcomes and all-cause mortality across diverse body mass index (BMI) categories.
    METHODS: In our analysis of the UK Biobank, we included a total of 481,576 participants (mean age: 56.55; male: 45.9%) at baseline. Metabolically healthy (MH) status was defined by the presence of < 3 abnormal components (waist circumstance, blood pressure, blood glucose, triglycerides, and high-density lipoprotein cholesterol). Normal weight, overweight, and obesity were defined as 18.5 ≤ BMI < 25 kg/m2, 25 ≤ BMI < 30 kg/m2, and BMI ≥ 30 kg/m2, respectively. Genetic predisposition was estimated using the polygenic risk score (PRS). Cox regressions were performed to evaluate the associations of metabolic status, metabolic transitions, and PRS with cardiovascular outcomes and all-cause mortality across BMI categories.
    RESULTS: During a median follow-up of 14.38 years, 31,883 (7.3%) all-cause deaths, 8133 (1.8%) cardiovascular disease (CVD) deaths, and 67,260 (14.8%) CVD cases were documented. Among those with a high PRS, individuals classified as metabolically healthy overweight had the lowest risk of all-cause mortality (hazard ratios [HR] 0.70; 95% confidence interval [CI] 0.65, 0.76) and CVD mortality (HR 0.57; 95% CI 0.50, 0.64) compared to those who were metabolically unhealthy obesity, with the beneficial associations appearing to be greater in the moderate and low PRS groups. Individuals who were metabolically healthy normal weight had the lowest risk of CVD morbidity (HR 0.54; 95% CI 0.51, 0.57). Furthermore, the inverse associations of metabolic status and PRS with cardiovascular outcomes and all-cause mortality across BMI categories were more pronounced among individuals younger than 65 years (Pinteraction < 0.05). Additionally, the combined protective effects of metabolic transitions and PRS on these outcomes among BMI categories were observed.
    CONCLUSIONS: MH status and a low PRS are associated with a lower risk of adverse cardiovascular outcomes and all-cause mortality across all BMI categories. This protective effect is particularly pronounced in individuals younger than 65 years. Further research is required to confirm these findings in diverse populations and to investigate the underlying mechanisms involved.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景:减肥手术是目前治疗重度肥胖最有效的长期治疗方法。然而,在手术结局中观察到的个体差异表明几个因素的调节作用,包括个体遗传背景。我们的目标是研究BMI的遗传结构对减肥手术后体重减轻结果变异性的贡献。
    方法:对106例重度肥胖患者行Roux-en-Y胃旁路术或袖状胃切除术,随访5年。在术后期间评估体重指数(BMIchange)和总体重减轻百分比(%TWL)的变化。为每个参与者计算包括50个遗传变异的多基因风险评分,以根据先前的GWAS确定他们的高BMI个体遗传风险。使用广义估计方程模型来研究个体多基因得分的作用,以及其他因素,术后长期BMI变化和%TWL。
    结果:我们发现多基因评分对%TWL和BMI改变有影响,其中得分较低的受试者在手术后的结局优于得分较高的受试者。此外,当仅分析接受Roux-en-Y胃旁路术的患者时,这些结果重复显示,多基因评分较低的患者术后体重减轻更大.
    结论:这些结果表明,用多基因风险评分评估遗传背景,以及其他个人因素,如性别,年龄,和术前BMI,对减肥手术结局有影响,可作为提前评估手术结局的有用工具.
    BACKGROUND: Bariatric surgery (BS) is currently the most effective long-term treatment of severe obesity. However, the interindividual variability observed in surgical outcomes suggests a moderating effect of several factors, including individual genetic background. This study aimed to investigate the contribution of the genetic architecture of body mass index (BMI) to the variability in weight loss outcomes after BS.
    METHODS: A total of 106 patients with severe obesity who underwent Roux-en-Y gastric bypass (RYGB) or sleeve gastrectomy were followed up for 5 years. Changes in BMI (BMIchange) and percentage of total weight loss (%TWL) were evaluated during the postoperative period. Polygenic risk scores (PRSs), including 50 genetic variants, were calculated for each participant to determine their genetic risk of high BMI based on a previous genome-wide association study. Generalized estimating equation models were used to study the role of the individual\'s polygenic score and other factors on BMIchange and %TWL in the long term after surgery.
    RESULTS: This study found an effect of the polygenic score on %TWL and BMIchange, in which patients with lower scores had better outcomes after surgery than those with higher scores. Furthermore, when analyzing only patients who underwent RYGB, the results were replicated, showing greater weight loss after surgery for patients with lower polygenic scores.
    CONCLUSIONS: Our results indicate that genetic background assessed with PRSs, along with other individual factors, such as biological sex, age, and preoperative BMI, has an effect on BS outcomes and could represent a useful tool for estimating surgical outcomes in advance.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    与普通人群相比,精神分裂症(SCZ)患者的代谢综合征(MetS)患病率高30%,其管理欠佳导致死亡率增加。提供潜在原因的真实世界证据的大规模研究仍然有限。
    为了解决这个问题,我们使用了爱沙尼亚生物库的真实健康数据,平均随访10年,探讨遗传易感性和抗精神病药物治疗对SCZ患者MetS发展的影响。具体来说,我们着手描述抗精神病药物的治疗模式,MetS性状的遗传易感性,MetS预后,和体重指数(BMI)轨迹,比较SCZ病例(n=677)与年龄和性别匹配的对照(n=2708)。
    SCZ病例对SCZ表现出更高的遗传易感性(OR=1.75,95%CI1.58-1.94),但与对照组相比,BMI(OR=0.88,95%CI0.88-0.96)和C反应蛋白(OR=0.88,95%CI0.81-0.97)的多基因负担较低。虽然SCZ病例显示MetS预后较差(HR1.95,95%CI1.54-2.46),在第1年治疗期间抗精神病药物依从性较高与长期MetS发病率降低相关.线性混合建模,结合多个BMI时间点,强调了两者的重大贡献,抗精神病药物,和遗传倾向于较高的BMI,推动SCZ病例BMI大幅上升的轨迹。
    这些发现有助于完善SCZ患者中MetS的临床风险预测和预防策略,并强调整合遗传信息的重要性,长期病人追踪,并在分析现实世界的健康数据时采用不同的观点。
    欧盟地平线2020,瑞典研究委员会,爱沙尼亚研究委员会,爱沙尼亚教育和研究部,塔尔图大学。
    UNASSIGNED: Schizophrenia (SCZ) patients exhibit 30% higher prevalence of metabolic syndrome (MetS) compared to the general population with its suboptimal management contributing to increased mortality. Large-scale studies providing real-world evidence of the underlying causes remain limited.
    UNASSIGNED: To address this gap, we used real-world health data from the Estonian Biobank, spanning a median follow-up of ten years, to investigate the impact of genetic predisposition and antipsychotic treatment on the development of MetS in SCZ patients. Specifically, we set out to characterize antipsychotic treatment patterns, genetic predisposition of MetS traits, MetS prognosis, and body mass index (BMI) trajectories, comparing SCZ cases (n = 677) to age- and sex-matched controls (n = 2708).
    UNASSIGNED: SCZ cases exhibited higher genetic predisposition to SCZ (OR = 1.75, 95% CI 1.58-1.94), but lower polygenic burden for increased BMI (OR = 0.88, 95% CI 0.88-0.96) and C-reactive protein (OR = 0.88, 95% CI 0.81-0.97) compared to controls. While SCZ cases showed worse prognosis of MetS (HR 1.95, 95% CI 1.54-2.46), higher antipsychotic adherence within the first treatment year was associated with reduced long-term MetS incidence. Linear mixed modelling, incorporating multiple BMI timepoints, underscored the significant contribution of both, antipsychotic medication, and genetic predisposition to higher BMI, driving the substantially upward trajectory of BMI in SCZ cases.
    UNASSIGNED: These findings contribute to refining clinical risk prediction and prevention strategies for MetS among SCZ patients and emphasize the significance of incorporating genetic information, long-term patient tracking, and employing diverse perspectives when analyzing real-world health data.
    UNASSIGNED: EU Horizon 2020, Swedish Research Council, Estonian Research Council, Estonian Ministry of Education and Research, University of Tartu.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景:关于轻度体力活动(LPA)的混合效应和重量的信息有限,适度的身体活动(MPA),和剧烈的体力活动(VPA)对痴呆症的风险。
    方法:基于UKBiobank数据集进行前瞻性队列研究。我们纳入了2006-2010年间基线年龄至少45岁无痴呆的参与者。采用加权分位数和回归分析三种体力活动对痴呆风险的混合效应和权重。
    结果:这项研究包括354,123名参与者,平均基线年龄为58.0岁,女性参与者占52.4%。在12.5年的中位随访时间内,观察到5,136例痴呆。LPA的混合效应,MPA,和VPA对痴呆有统计学意义(β:-0.0924,95%置信区间(CI):(-0.1402,-0.0446),P<0.001),VPA(体重:0.7922)对降低痴呆症风险的贡献最大,其次是MPA(0.1939)。对于阿尔茨海默病,MPA贡献最大(0.8555);对于血管性痴呆,VPA贡献最大(0.6271)。
    结论:对于阿尔茨海默病,MPA被确定为最具影响力的因素,而VPA对血管性痴呆最有影响。
    BACKGROUND: There is limited information on the mixture effect and weights of light physical activity (LPA), moderate physical activity (MPA), and vigorous physical activity (VPA) on dementia risk.
    METHODS: A prospective cohort study was conducted based on the UK Biobank dataset. We included participants aged at least 45 years old without dementia at baseline between 2006-2010. The weighted quantile sum regression was used to explore the mixture effect and weights of three types of physical activity on dementia risk.
    RESULTS: This study includes 354,123 participants, with a mean baseline age of 58.0-year-old and 52.4 % of female participants. During a median follow-up time of 12.5 years, 5,136 cases of dementia were observed. The mixture effect of LPA, MPA, and VPA on dementia was statistically significant (β: -0.0924, 95 % Confidence Interval (CI): (-0.1402, -0.0446), P < 0.001), with VPA (weight: 0.7922) contributing most to a lower dementia risk, followed by MPA (0.1939). For Alzheimer\'s disease, MPA contributed the most (0.8555); for vascular dementia, VPA contributed the most (0.6271).
    CONCLUSIONS: For Alzheimer\'s disease, MPA was identified as the most influential factor, while VPA stood out as the most impactful for vascular dementia.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景:注意缺陷多动障碍(ADHD)通常与成年患者的其他疾病并存。然而,ADHD在成年人中的诊断严重不足,对未诊断的患有ADHD的成年人的医疗合并症知之甚少。在这项研究中,我们调查了所有诊断类别中ADHD遗传责任与基于电子健康记录(EHR)的ICD-10诊断之间的关联。在没有ADHD诊断史的个体中。
    方法:我们使用来自爱沙尼亚生物库队列(N=111-261)的数据,并基于ADHD全基因组关联研究得出ADHD(PRSADHD)的多基因风险评分(PRS)。我们进行了一项表型全关联研究(PheWAS),以测试全样本和性别分层样本中标准化PRSADHD与1515例基于EHR的ICD-10诊断之间的关联。我们比较了观察到的显著ICD-10关联与(1)ADHD诊断和(2)基于问卷的高ADHD风险分析的关联。
    结果:在Bonferroni校正(p=3.3×10-5)后,我们确定了80种与PRSADHD相关的医疗状况。最有力的证据是慢性阻塞性肺疾病(OR1.15,CI1.11-1.18),肥胖(OR1.13,CI1.11-1.15),和2型糖尿病(OR1.11,CI1.09-1.14)。性别分层分析通常显示男性和女性的关联相似。在所有确定的协会中,使用ADHD诊断或基于问卷的ADHD也观察到40%和78%,分别,作为预测器。
    结论:总的来说,我们的研究结果表明,在未确诊的个体中,多动症的遗传倾向与大量疾病的风险增加有关。这些结果强调了及时检测和改善成人ADHD症状管理的必要性。
    BACKGROUND: Attention-deficit hyperactivity disorder (ADHD) is often comorbid with other medical conditions in adult patients. However, ADHD is extremely underdiagnosed in adults and little is known about the medical comorbidities in undiagnosed adult individuals with high ADHD liability. In this study we investigated associations between ADHD genetic liability and electronic health record (EHR)-based ICD-10 diagnoses across all diagnostic categories, in individuals without ADHD diagnosis history.
    METHODS: We used data from the Estonian Biobank cohort (N = 111 261) and generated polygenic risk scores (PRS) for ADHD (PRSADHD) based on the ADHD genome-wide association study. We performed a phenome-wide association study (PheWAS) to test for associations between standardized PRSADHD and 1515 EHR-based ICD-10 diagnoses in the full and sex-stratified sample. We compared the observed significant ICD-10 associations to associations with (1) ADHD diagnosis and (2) questionnaire-based high ADHD risk analyses.
    RESULTS: After Bonferroni correction (p = 3.3 × 10-5) we identified 80 medical conditions associated with PRSADHD. The strongest evidence was seen with chronic obstructive pulmonary disease (OR 1.15, CI 1.11-1.18), obesity (OR 1.13, CI 1.11-1.15), and type 2 diabetes (OR 1.11, CI 1.09-1.14). Sex-stratified analysis generally showed similar associations in males and females. Out of all identified associations, 40% and 78% were also observed using ADHD diagnosis or questionnaire-based ADHD, respectively, as the predictor.
    CONCLUSIONS: Overall our findings indicate that ADHD genetic liability is associated with an increased risk of a substantial number of medical conditions in undiagnosed individuals. These results highlight the need for timely detection and improved management of ADHD symptoms in adults.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:冠状动脉疾病(CAD)是全球3840万HIV感染者中的主要死亡原因。在非HIV人群中得出的心血管多基因风险评分(PRS)在HIV感染者中的推广程度尚不清楚。
    结果:CAD的PRS(GPSMult)和脂质特征是在REPRIEVE(预防HIV血管事件的随机试验)中招募的接受抗逆转录病毒疗法治疗的HIV患者的全球队列中计算的。在4495名基因型参与者中,PRS与基线脂质性状相关,在接受冠状动脉计算机断层扫描血管造影术的662例亚组中,患有亚临床CAD。在接受冠状动脉计算机断层扫描血管造影术的参与者中(平均年龄,50.9[SD,5.8]岁;16.1%的女性;41.8%的非洲人,57.3%欧洲,1.1%亚洲人),GPSMult与斑块的存在相关,GPSMult中每SD的比值比(OR)为1.42(95%CI,1.20-1.68;P=3.8×10-5),狭窄>50%(或,2.39[95%CI,1.48-3.85];P=3.4×10-4),和非钙化/易损斑块(OR,1.45[95%CI,1.23-1.72];P=9.6×10-6)。在年龄亚组的影响是一致的,性别,10年动脉粥样硬化性心血管疾病风险,祖先,和CD4计数。将GPSMult添加到已确定的危险因素中,预测斑块存在的C统计量从0.718增加到0.734(P=0.02)。此外,低密度脂蛋白胆固醇的PRS与斑块的存在相关,OR为1.21(95%CI,1.01-1.44;P=0.04),和部分钙化斑块,每SD的OR为1.21(95%CI,1.01-1.45;P=0.04)。
    结论:在接受抗逆转录病毒治疗的HIV患者中,没有记录到动脉粥样硬化性心血管疾病,并且在REPRIEVE中处于低-中度计算风险,外部开发的CADPRS可预测亚临床动脉粥样硬化.低密度脂蛋白胆固醇的PRS也与亚临床动脉粥样硬化有关,支持低密度脂蛋白胆固醇在HIV相关CAD中的作用。
    背景:URL:https://www。reprievetrial.org;唯一标识符:NCT02344290。
    BACKGROUND: Coronary artery disease (CAD) is a leading cause of death among the 38.4 million people with HIV globally. The extent to which cardiovascular polygenic risk scores (PRSs) derived in non-HIV populations generalize to people with HIV is not well understood.
    RESULTS: PRSs for CAD (GPSMult) and lipid traits were calculated in a global cohort of people with HIV treated with antiretroviral therapy with low-to-moderate atherosclerotic cardiovascular disease risk enrolled in REPRIEVE (Randomized Trial to Prevent Vascular Events in HIV). The PRSs were associated with baseline lipid traits in 4495 genotyped participants, and with subclinical CAD in a subset of 662 who underwent coronary computed tomography angiography. Among participants who underwent coronary computed tomography angiography (mean age, 50.9 [SD, 5.8] years; 16.1% women; 41.8% African, 57.3% European, 1.1% Asian), GPSMult was associated with plaque presence with odds ratio (OR) per SD in GPSMult of 1.42 (95% CI, 1.20-1.68; P=3.8×10-5), stenosis >50% (OR, 2.39 [95% CI, 1.48-3.85]; P=3.4×10-4), and noncalcified/vulnerable plaque (OR, 1.45 [95% CI, 1.23-1.72]; P=9.6×10-6). Effects were consistent in subgroups of age, sex, 10-year atherosclerotic cardiovascular disease risk, ancestry, and CD4 count. Adding GPSMult to established risk factors increased the C-statistic for predicting plaque presence from 0.718 to 0.734 (P=0.02). Furthermore, a PRS for low-density lipoprotein cholesterol was associated with plaque presence with OR of 1.21 (95% CI, 1.01-1.44; P=0.04), and partially calcified plaque with OR of 1.21 (95% CI, 1.01-1.45; P=0.04) per SD.
    CONCLUSIONS: Among people with HIV treated with antiretroviral therapy without documented atherosclerotic cardiovascular disease and at low-to-moderate calculated risk in REPRIEVE, an externally developed CAD PRS was predictive of subclinical atherosclerosis. PRS for low-density lipoprotein cholesterol was also associated with subclinical atherosclerosis, supporting a role for low-density lipoprotein cholesterol in HIV-associated CAD.
    BACKGROUND: URL: https://www.reprievetrial.org; Unique identifier: NCT02344290.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景:遗传和环境对血浆蛋白质组与体重指数(BMI)和BMI变化的关联的影响仍未得到充分研究,这些关联中与其他组学的联系仍有待研究。我们描述了青少年和成年人的蛋白质-BMI轨迹关联,以及这些关联如何与其他组学层联系。
    方法:我们的研究包括两组纵向跟随双胞胎:FinnTwin12(N=651)和荷兰双胞胎注册(NTR)(N=665)。随访包括大约6(NTR:23-27岁)至10年(FinnTwin12:12-22岁)的4次BMI测量,与上次BMI测量时收集的组学数据。在潜在生长曲线模型中计算BMI变化。使用混合效应模型来量化439种血浆蛋白的丰度与血液采样时的BMI和BMI变化之间的关联。在FinnTwin12中,通过孪生模型对蛋白质丰度的遗传和环境变异的来源进行了量化,蛋白质与BMI和BMI变化的关联也是如此。在NTR中,我们调查了编码FinnTwin12中鉴定的蛋白质的基因的基因表达与BMI和BMI变化的关联。我们使用混合效应模型和相关网络将鉴定的蛋白质及其编码基因与血浆代谢物和多基因风险评分(PRS)联系起来。
    结果:我们在采血时鉴定出66和14种与BMI相关的蛋白质,分别。这些蛋白质的平均遗传率为35%。在66个BMI-蛋白质关联中,43和12显示了遗传和环境的相关性,分别,包括8种显示两者的蛋白质。同样,我们观察到BMI和蛋白质丰度变化之间的7和3个遗传和环境相关性,分别。S100A8基因表达与采血时BMI相关,PRG4和CFI基因与BMI变化相关。蛋白质显示与代谢物和PRS的强连接,但是我们没有观察到基因表达层和其他组学层之间的多组学联系。
    结论:蛋白质组和BMI轨迹之间的关联具有共同的遗传特征,环境,和代谢病因。我们在蛋白质组和转录组水平观察到与BMI或BMI变化相关的基因-蛋白质对。
    The influence of genetics and environment on the association of the plasma proteome with body mass index (BMI) and changes in BMI remains underexplored, and the links to other omics in these associations remain to be investigated. We characterized protein-BMI trajectory associations in adolescents and adults and how these connect to other omics layers.
    Our study included two cohorts of longitudinally followed twins: FinnTwin12 (N = 651) and the Netherlands Twin Register (NTR) (N = 665). Follow-up comprised 4 BMI measurements over approximately 6 (NTR: 23-27 years old) to 10 years (FinnTwin12: 12-22 years old), with omics data collected at the last BMI measurement. BMI changes were calculated in latent growth curve models. Mixed-effects models were used to quantify the associations between the abundance of 439 plasma proteins with BMI at blood sampling and changes in BMI. In FinnTwin12, the sources of genetic and environmental variation underlying the protein abundances were quantified by twin models, as were the associations of proteins with BMI and BMI changes. In NTR, we investigated the association of gene expression of genes encoding proteins identified in FinnTwin12 with BMI and changes in BMI. We linked identified proteins and their coding genes to plasma metabolites and polygenic risk scores (PRS) applying mixed-effects models and correlation networks.
    We identified 66 and 14 proteins associated with BMI at blood sampling and changes in BMI, respectively. The average heritability of these proteins was 35%. Of the 66 BMI-protein associations, 43 and 12 showed genetic and environmental correlations, respectively, including 8 proteins showing both. Similarly, we observed 7 and 3 genetic and environmental correlations between changes in BMI and protein abundance, respectively. S100A8 gene expression was associated with BMI at blood sampling, and the PRG4 and CFI genes were associated with BMI changes. Proteins showed strong connections with metabolites and PRSs, but we observed no multi-omics connections among gene expression and other omics layers.
    Associations between the proteome and BMI trajectories are characterized by shared genetic, environmental, and metabolic etiologies. We observed few gene-protein pairs associated with BMI or changes in BMI at the proteome and transcriptome levels.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    在结直肠癌(CRC)中已检测到尿素循环(UC)的失调。然而,UC的最终产品的影响,尿素,儿童权利委员会的发展仍不清楚。我们基于从英国生物银行招募的348872名无癌参与者的数据,调查了血清尿素与CRC风险之间的关联。拟合多变量Cox比例风险模型进行风险估计。基于性别的分层分析,饮食模式,代谢因素(包括体重指数[BMI],我们通过估算的肾小球滤过率[eGFR]和2型糖尿病[T2D])和遗传谱(CRC的多基因风险评分[PRS])来寻找潜在的修饰因子.在平均9.0年的随访中,我们确定了3408例(1.0%)CRC事件病例.血清尿素与CRC风险呈非线性关系(P-非线性:.035)。较低的血清尿素水平与较高的CRC风险相关。在尿素的第一个四分位数(Q1)中,完全调整的风险比(HR)为1.26(95%置信区间[CI]:1.13-1.41),与Q4相比。这种关联在性别亚组之间基本一致,蛋白质饮食,BMI,eGFR和CRC-PRS(P相互作用>0.05);然而,它在T2D中更强,尿素和T2D在相加(协同指数:3.32,[95%CI:1.24-8.88])和倍增尺度(P-交互作用:.019)上都有相互作用。较低的血清尿素浓度与CRC风险增加相关。在T2D患者中观察到更明显的效果。维持稳定的血清尿素水平对预防CRC具有重要意义。特别是在T2D患者中。
    Dysregulation of the urea cycle (UC) has been detected in colorectal cancer (CRC). However, the impact of the UC\'s end product, urea, on CRC development remains unclear. We investigated the association between serum urea and CRC risk based on the data of 348 872 participants cancer-free at recruitment from the UK Biobank. Multivariable Cox proportional hazards models were fitted to conduct risk estimates. Stratification analyses based on sex, diet pattern, metabolic factors (including body mass index [BMI], the estimated glomerular filtration rate [eGFR] and type 2 diabetes [T2D]) and genetic profiles (the polygenic risk score [PRS] of CRC) were conducted to find potential modifiers. During an average of 9.0 years of follow-up, we identified 3408 (1.0%) CRC incident cases. Serum urea showed a nonlinear relationship with CRC risk (P-nonlinear: .035). Lower serum urea levels were associated with a higher CRC risk, with a fully-adjusted hazard ratio (HR) of 1.26 (95% confidence interval [CI]: 1.13-1.41) in the first quartile (Q1) of urea, compared to the Q4. This association was largely consistent across subgroups of sex, protein diet, BMI, eGFR and CRC-PRSs (P-interaction >.05); however, it was stronger in the T2D, with an interaction between urea and T2D on both additive (synergy index: 3.32, [95% CI: 1.24-8.88]) and multiplicative scales (P-interaction: .019). Lower serum urea concentrations were associated with an increased risk of CRC, with a more pronounced effect observed in individuals with T2D. Maintaining stable levels of serum urea has important implications for CRC prevention, particularly in individuals with T2D.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

公众号