otolith

耳石
  • 文章类型: Journal Article
    鱼耳骨,被称为耳石,经常在渔业中收集以协助管理,是博物馆和国家档案馆中常见的样本类型。除了它们对衰老的效用之外,形态和微量元素分析,耳石是有价值的基因组信息库。先前的工作表明,可以从保留在耳石表面的痕量组织中提取DNA,尽管它们通常在室温下干燥储存。然而,大部分工作都在干净的实验室条件下使用了简化的代表性测序方法,为了获得足够的DNA产量,文库和最终的单核苷酸多态性(SNP)。这里,我们率先使用小规模(掺入)测序来筛选在常规分子生物学(与清洁相比)实验室制备的当代耳石样品的污染和质量水平,仅提交高于定义的内源性DNA阈值的样本进行全基因组重测序.尽管从耳石中提取的DNA质量和数量通常都很低,我们能够产生全基因组文库和最终过滤的集合,无联系的,甚至是推定的适应性SNP,有足够的数量用于人口的下游用途,气候和保护基因组学。通过与一组来自同一物种的组织样本进行比较,我们能够从DNA提取和文库制备中突出耳石样品的质量和功效,生物信息学预处理和SNP调用。我们提供详细的原理图,我们方法的协议和脚本,这样它就可以被社区广泛采用,改善耳石作为有价值的基因组数据来源的使用。
    Fish ear bones, known as otoliths, are often collected in fisheries to assist in management, and are a common sample type in museum and national archives. Beyond their utility for ageing, morphological and trace element analysis, otoliths are a repository of valuable genomic information. Previous work has shown that DNA can be extracted from the trace quantities of tissue remaining on the surface of otoliths, despite the fact that they are often stored dry at room temperature. However, much of this work has used reduced representation sequencing methods in clean lab conditions, to achieve adequate yields of DNA, libraries and ultimately single-nucleotide polymorphisms (SNPs). Here, we pioneer the use of small-scale (spike-in) sequencing to screen contemporary otolith samples prepared in regular molecular biology (in contrast to clean) laboratories for contamination and quality levels, submitting for whole-genome resequencing only samples above a defined endogenous DNA threshold. Despite the typically low quality and quantity of DNA extracted from otoliths, we are able to produce whole-genome libraries and ultimately sets of filtered, unlinked and even putatively adaptive SNPs of ample numbers for downstream uses in population, climate and conservation genomics. By comparing with a set of tissue samples from the same species, we are able to highlight the quality and efficacy of otolith samples from DNA extraction and library preparation, to bioinformatic preprocessing and SNP calling. We provide detailed schematics, protocols and scripts of our approach, such that it can be adopted widely by the community, improving the use of otoliths as a source of valuable genomic data.
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  • 文章类型: Journal Article
    气候变暖正在导致生殖物候的变化,决定后代生存和种群生产力的关键生活史特征。评估这些对已开采海洋资源的影响对于从生态系统方法实施适应性措施至关重要。本研究引入了一种统计模型,旨在从海面温度曲线预测鱼类产卵物候,综合从依赖渔业的采样推断的死亡率校正孵化日期分布,以及成人的性腺指数。当应用于广泛的纬度范围内的不同海豚鱼(Coryphaenahippurus)种群时,该模型合理地预测了其广泛的热范围内的产卵物候,阐明年平均温度与产卵季节宽度之间的直接关系。尽管不同的热分布,结果显示产卵峰的时间在温度峰值前约49天一致。重要的是,这些发现解释了渔业限制的影响,例如季节性关闭或不同的抽样时间表,提供了一个强大的工具来调整管理实践,以应对年际温度变化。这些见解对于短期渔业管理至关重要,包括季节性关闭的战略规划,以及在变化的热态下产卵物候变化的长期预测。通过增强我们预测产卵时间的能力,这项研究为鱼类种群的可持续管理和对环境变化的适应性反应做出了重要贡献。
    Climate warming is causing shifts in reproductive phenology, a crucial life history trait determining offspring survival and population productivity. Evaluating these impacts on exploited marine resources is essential for implementing adaptive measures from an ecosystemic approach. This study introduces a statistical model designed to predict fish spawning phenology from sea surface temperature profiles, integrating mortality-corrected hatch-date distributions inferred from fishery-dependent samplings, along with the gonadosomatic index of adult individuals. When applied to different dolphinfish (Coryphaena hippurus) populations across a broad latitudinal range, the model reasonably predicts the spawning phenology across its extensive thermal ranges, elucidating a direct relationship between mean annual temperature and the breadth of the spawning season. Despite the varying thermal profiles, results show a consistent timing of spawning peaks approximately 49 days before the peak in temperature. Importantly, these findings account for the impact of fishery constraints, such as seasonal closures or different sampling schedules, offering a robust tool for adjusting management practices in response to inter-annual temperature variations. These insights are critical for both short-term fishery management, including the strategic planning of seasonal closures, and long-term projections of spawning phenology shifts under changing thermal regimes. By enhancing our ability to predict spawning times, this research contributes significantly to the sustainable management of fish populations and the adaptive response to environmental changes.
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  • 文章类型: Journal Article
    声音刺激可以影响电生理前庭反射。然而,声音刺激对空间感知的影响仍然未知。
    了解单耳声音刺激对主观视觉垂直(SVV)的影响。
    我们在有和没有单耳声音刺激的情况下测量了SVV(105dB,在50名健康志愿者(年龄20-77[平均值=42.7]岁)中,以4.7Hz的频率呈现500Hz短音突发)。
    右单耳声音刺激使平均SVV向左偏离0.139°,左单耳声音刺激使平均SVV向右偏离0.123°。右耳和左耳刺激引起的SVV变化显着不同(p=0.019)。声音刺激导致50岁或以下(平均=35.6岁)(n=37)的受试者左侧SVV发生显着变化(p=0.014)。
    这项研究首次显示了单耳声音输入将SVV偏向相对侧的可能性,并且对于左耳输入更为明显。由于声音输入,前庭诱发的肌源性电位反应可能与对侧SVV偏离的机制有关。
    UNASSIGNED: Sound stimulation can influence electrophysiological vestibular reflexes. However, the effects of sound stimulation on space perception remain unknown.
    UNASSIGNED: To know the effects of monaural sound stimulation on subjective visual vertical (SVV).
    UNASSIGNED: We measured SVV with and without monaural sound stimulation (105 dB, 500 Hz short tone burst presented at 4.7 Hz) in 50 healthy volunteers (aged 20-77 [mean = 42.7] years).
    UNASSIGNED: The mean SVV was deviated 0.139° to the left by right monaural sound stimulation and 0.123° to the right by left monaural sound stimulation. SVV changes due to right and left ear stimulations were significantly different (p = 0.019). Sound stimulation resulted in a significant change in SVV on the left side (p = 0.014) in participants aged 50 or younger (mean = 35.6 years) (n = 37).
    UNASSIGNED: This study is the first to show the possibility that the monaural sound input deviates the SVV toward the opposite side and is more pronounced for left-ear input. The vestibular-evoked myogenic potential responses may be involved in the mechanism of the contralateral SVV deviation due to sound input.
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  • 文章类型: Journal Article
    圣劳伦斯湾(GSL)的深水红鱼(Sebastesmentella)的案例是年度招聘人数剧烈波动的一个令人信服的例子,痉挛型股票的特征。经过三十年的低丰度,2011-2013年连续三个强劲的年度课程的出现导致了生物量的空前增加。在诸如GSL红鱼之类的痉挛种群中,强劲的年班维持了几十年的生物量和渔获量。因此,了解这些群体的增长动态至关重要。在本研究中,我们使用基于耳石增量的年度年代学重建了红鱼的年增长率,并研究了2010年代初和1980年代初红鱼强年级生长变化的驱动因素。种群生物量被确定为红鱼生长的主要外在驱动力,表明在高特定密度下对食物的激烈竞争。GSL的深水变暖,成年红鱼定居的地方,与个体生长呈正相关。然而,最近寒冷中间层的变暖与红鱼的生长呈负相关,可能与栖息地的缩小有关,这种水团提供了各种红鱼冷水猎物,而不是温度的直接影响。从出生到捕获的红鱼年增长率轨迹的重建强调了结转效应在强劲的年级增长潜力中的重要性。这项工作为推动GSL红鱼痉挛种群生长变化的因素提供了重要的初步展望,并探讨了密度依赖性压力对种群生物学参数的中期影响。
    The case of the deepwater redfish (Sebastes mentella) in the Gulf of St. Lawrence (GSL) is a compelling example of drastic fluctuations in annual recruitment strength, characteristic of spasmodic stocks. After three decades of low abundance, the emergence of three consecutive strong year classes in 2011-2013 resulted in an unprecedented increase in biomass. In spasmodic stocks such as GSL redfish, strong year classes sustain both the biomass and catch for decades. Therefore, understanding the growth dynamics of these cohorts is essential. In the present study, we reconstructed the annual growth rates of redfish using otolith increment-based annual chronology and investigated the drivers of growth variation in redfish strong year classes of the early 2010s and early 1980s. Stock biomass was identified as the main extrinsic driver of redfish growth, suggesting intense competition for food at high conspecific density. Warming of deep waters in the GSL, where adult redfish settle, positively correlated with individual growth. However, recent warming of the cold intermediate layer showed a negative correlation with redfish growth, likely related to the shrinking of the habitat this water mass provides for various redfish cold-water prey rather than to a direct effect of temperature. Reconstruction of redfish annual growth trajectories from birth to capture emphasized the importance of carryover effects in the growth potential of strong year classes. This work provided an important first outlook of the factors driving growth variation in GSL redfish spasmodic stock and explored midterm consequences of density-dependent pressures on biological parameters of the population.
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  • 文章类型: Journal Article
    内耳负责平衡和听觉功能。感觉神经性听力损失(SNHL)影响不同年龄段的听觉功能。前庭器官,特别是在SNHL的情况下,耳石器官也会受到影响,因为耳石器官与骨迷宫内的耳蜗非常接近。耳石器官可以通过主观视觉垂直测试(SVV)进行评估,这是一个简单的,快速,非侵入性检测具有较高的敏感性和特异性。进行本研究的目的是比较正常和SNHL患者之间的SVV参数,并将SVV的倾斜程度与SNHL的严重程度相关联。采取60个方便的样本量,其中30个是对照,30个是SNHL患者。对两组进行PTA和SVV,并在IBMSPSS版本26中分析结果。对照组和SNHL组在20-40岁和>40岁年龄段之间的年龄分层分析显示,平均静态SVV(20-40岁和>40岁年龄段分别为P=0.019和P=0.009)和动态逆时针SVV(20-40岁年龄段为P=0.024和P=0.031,和>40岁)在对照组和SNHL组之间。相关性分析还显示了骨传导阈值与各种SVV参数之间的中等相关性。两组之间SVV参数的统计差异表明SNHL可能早期涉及耳石器官。因此,需要进一步探索SVV作为耳石功能障碍的早期标志物的实用性。可能值得对SNHL患者进行纵向随访,并定期使用SVV评估耳石功能,以确定任何进展。
    The inner ear is responsible for balance and auditory function. Sensorineural hearing loss (SNHL) affects auditory function across various age groups. Vestibular apparatus, particularly the otolith organ can also be affected in cases of SNHL because of the close proximity of the otolith organs with the cochlea inside the bony labyrinth. The otolith organs can be assessed with Subjective Visual vertical test (SVV), which is a simple, rapid, non-invasive test with high sensitivity and specificity. Present study was conducted with the objective to compare the SVV parameters between normal and SNHL patients and to correlate between the degree of tilt in SVV with severity of SNHL. A convenient sample size of 60 was taken of which 30 were control and 30 were SNHL patients. PTA and SVV were performed on both groups and results were analysed in IBM SPSS version 26. Age stratified analysis between the control group and SNHL group for the age group 20-40 years and for > 40 years revealed a significant statistical difference in the average static SVV (P = 0.019 and P = 0.009 for age group 20-40 years and > 40 years respectively) and dynamic anti clockwise SVV (P = 0.024 and P = 0.031 for age group 20-40 years, and > 40 years respectively) between the control group and the SNHL group. Correlational analysis also shows a moderate correlation between the bone conduction threshold and the various SVV parameters. Statistical difference of SVV parameters between the two groups suggests a possible early involvement of the otolith organ in SNHL. As such the utility of SVV as an early marker for otolith dysfunction needs to be further explored. It may be worthwhile to follow up the patients of SNHL longitudinally and assess the otolith function with SVV at periodic intervals to identify any progression.
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  • 文章类型: Journal Article
    与气候变化相关的二氧化碳水平增加可能会对水生生态系统产生破坏性影响。水生环境吸收二氧化碳,导致酸性条件会对鱼类发育产生负面影响。未来几十年气候变化的影响将对年轻一代产生巨大影响。因此,我们的研究有两个相互关联的目标:1)了解水生酸化如何影响斑马鱼的发育,和2)支持高中科学家解决对她这一代越来越重要的环境问题的能力。与老师和其他导师合作,第一作者设计并进行了研究,首先在她的高中,然后在大学研究实验室.斑马鱼胚胎在不同的pH条件(6.7-8.2)下饲养长达7天。我们评估了鱼的长度和内耳的发育,包括耳石;依赖于碳酸钙进行适当发展的结构。虽然pH值不影响鱼的长度,在pH7.75饲养的鱼的前耳石较小,表明pH值可以影响斑马鱼耳朵的发育。此外,我们展示了斑马鱼如何用于高中生使用不同水平的可用资源进行开放式问题。
    Increasing carbon dioxide levels associated with climate change will likely have a devastating effect on aquatic ecosystems. Aquatic environments sequester carbon dioxide, resulting in acidic conditions that can negatively affect fish development. Increasing climate change impacts in the coming decades will have an outsized effect on younger generations. Therefore, our research had two interconnected goals: 1) understand how aquatic acidification affects the development of zebrafish, and 2) support a high school scientist\'s ability to address environmental questions of increasing importance to her generation. Working with teachers and other mentors, the first author designed and conducted the research, first in her high school, then in a university research laboratory. Zebrafish embryos were reared in varying pH conditions (6.7-8.2) for up to 7 days. We assessed fish length and development of the inner ear, including the otoliths; structures that depend on calcium carbonate for proper development. Although pH did not affect fish length, fish reared in pH 7.75 had smaller anterior otoliths, showing that pH can impact zebrafish ear development. Furthermore, we demonstrate how zebrafish may be used for high school students to pursue open-ended questions using different levels of available resources.
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  • 文章类型: Journal Article
    背景:可感知的电前庭刺激(GVS)会导致眼球震颤和姿势摇摆恶化。相反,不易察觉的GVS提高了姿势稳定性,这表明存在随机共振。
    目标:类似于GVS,7T的强磁前庭刺激会引起眼球震颤并增加身体摇摆。因此,相对较小的磁刺激可以提高姿势稳定性。在这项研究中,我们测量了相对较小的磁场对姿势摇摆的影响。
    方法:使用船上装有泡沫橡胶的稳定计对8名健康参与者进行了姿势检查。在眼睛闭合的情况下,在前后和内外侧两个方向上记录压力中心(COP)轨迹60s。将钕磁体(0.4T)或相似尺寸的铝盘(0T)两侧放置在乳突上。
    结果:0.4T的COP运动的轨迹长度和包络面积均明显小于0T的COP运动。
    结论:相对较小的磁前庭刺激减少了姿势摇摆。这种方法可能有助于改善前庭功能和相关反射。
    BACKGROUND: Perceptible galvanic vestibular stimulation (GVS) causes nystagmus and postural sway deterioration. Conversely, imperceptible GVS improves postural stability, suggesting the presence of stochastic resonance.
    OBJECTIVE: Similar to GVS, strong magnetic vestibular stimulation of 7 T induces nystagmus and increases body sway. Thus, a relatively small magnetic stimulation may improve postural stability. In this study, we measured the effect of a relatively small magnetic field on postural sway.
    METHODS: Posturography was performed in eight healthy participants using a stabilometer with foam rubber on board. The center of pressure (COP) trajectories were recorded in both the anterior-posterior and medial-lateral directions for 60 s with the eye closed. Neodymium magnets (0.4 T) or aluminum disks of similar size (0 T) were placed bilaterally over the mastoid processes.
    RESULTS: Both the trajectory length and envelopment area of the COP movement with 0.4 T were significantly smaller than those with 0 T.
    CONCLUSIONS: The relatively smaller magnetic vestibular stimulation decreased postural sway. This method may be useful for improving the vestibular function and related reflexes.
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  • 文章类型: Journal Article
    耳石中的微量元素和稳定同位素比率已被用作硬骨鱼迁移历史的代理;但是,它们在海洋鱼类中的应用仍然有限。这项研究报告了首次在耳石中使用放射性碳来评估海洋鱼类的水平迁移历史,角膜白斑波洛克·加杜斯的巨著。我们对来自北海道的三种库存进行了放射性碳分析,日本。日本太平洋耳石最外层的放射性碳浓度,北日本海(JS),和鄂霍次克南部海(OS)的种群与采样区的海水放射性碳浓度基本一致,这表明所有三种种群的种群通常都居住在整个生命周期中对每个种群进行采样的海域内。然而,放射性碳信号还提供了一些迹象,表明一些JS和OS库存可能在不同海域之间迁移。拟议的使用耳石中的放射性碳重建海鱼个体迁移历史的新方法可能有助于以较高的时间和空间分辨率检查鱼类迁移,而微量元素和稳定的同位素比率无法实现。
    Trace elements and stable isotope ratios in otoliths have been used as proxies for the migration history of teleosts; however, their application in oceanic fishes remains limited. This study reports the first use of radiocarbons in otoliths to evaluate the horizontal migration histories of an oceanic fish species, the walleye pollock Gadus chalcogrammus. We conducted radiocarbon analyses of three stocks sourced from Hokkaido, Japan. The radiocarbon concentrations from the outermost portion of the otoliths from the Japanese Pacific, Northern Japan Sea (JS), and Southern Okhotsk Sea (OS) stocks were in general agreement with the seawater radiocarbon concentration of the sampling region, suggesting that pollock of all three stocks generally inhabited the within the sea region where each pollocks were sampled throughout their life cycle. However, the radiocarbon signals also provided some indications that some JS and OS stocks may be migrating between different sea regions. The proposed novel approach of reconstructing the individual migration history of marine fish using radiocarbon in otoliths may help examine fish migration with a higher temporal and spatial resolution that could not be achieved by trace elements and stable isotope ratios.
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  • 文章类型: Journal Article
    尽管已经尝试了各种医疗疗法来减轻梅尼埃病(MD)的症状,这些不同治疗方法的风险-收益比仍有争议.
    我们研究了100Hz声音刺激治疗梅尼埃病(MD)患者前庭功能障碍的疗效。
    对患有难治性前庭症状和内耳内淋巴积水(EH)的明确MD患者进行了评估。实验组在100Hz的频率下接受75dB的声音刺激,持续5min,对照组在250Hz的频率下接受75dB的声音刺激,持续5分钟。在每次声音刺激之前和之后测量宫颈前庭诱发的肌源性电位(cVEMPs),并比较两组患者的临床检查结果。
    在有前庭内淋巴积水的耳朵中,声音刺激100Hz后,观察到cVEMP振幅显着增加,尽管对照组没有观察到这种改善。
    在100Hz频率下的75dB声音刺激导致明确MD患者的cVEMP振幅改善。适当的声音刺激可能是治疗与MD相关的前庭功能障碍的新方法。
    UNASSIGNED: Although various medical remedies have been attempted to alleviate the symptoms of Meniere\'s disease (MD), the risk-benefit ratios of these various treatments remain debatable.
    UNASSIGNED: We investigated the efficacy of sound stimulation of 100 Hz for treating vestibular dysfunction in patients with Meniere\'s disease (MD).
    UNASSIGNED: Patients with definitive MD with intractable vestibular symptoms and endolymphatic hydrops (EH) in the inner ear were evaluated. The experimental group received sound stimulation of 75 dB at a frequency of 100 Hz for 5 min, and the control group received sound stimulation of 75 dB at a frequency of 250 Hz for 5 min. Cervical vestibular-evoked myogenic potentials (cVEMPs) were measured before and after each sound stimulation, and the results of the clinical tests were compared between the two patient groups.
    UNASSIGNED: Significant increases in cVEMP amplitudes were observed after sound stimulation of 100 Hz in ears with vestibular endolymphatic hydrops, although no such improvement was observed in the control group.
    UNASSIGNED: Sound stimulation of 75 dB at a frequency of 100 Hz leads to improvement in cVEMP amplitude in patients with definitive MD. Adequate sound stimulation might be a new method for treating vestibular dysfunction associated with MD.
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  • 文章类型: Journal Article
    波动的海洋条件正在重新安排整个海洋社区网络-从个体水平的生理阈值到生态系统功能。生理研究支持来自个体水平反应的预测(生化,细胞,组织,呼吸电位)基于实验室实验。恢复田间代谢率的耳石同位素方法最近填补了硬骨鱼的空白,将耳石稳定同位素组成与原位耗氧量和经历的温度估计联系起来。这里,我们回顾了耳石同位素方法,重点是生化和生理过程,这些过程可以估算田间代谢率。我们确定了应用这种方法的多学科途径,提供具体的研究目标(领域,建模)旨在将个体水平的生理数据与更高层次的生物组织联系起来。我们希望这次审查将为研究人员提供一个跨学科的“路线图”,指导使用耳石同位素方法弥合个体生理学之间的差距,实地观察研究,和建模工作,同时确保现场数据在旨在减轻气候和人为威胁的海洋决策中至关重要。
    Fluctuating ocean conditions are rearranging whole networks of marine communities-from individual-level physiological thresholds to ecosystem function. Physiological studies support predictions from individual-level responses (biochemical, cellular, tissue, respiratory potential) based on laboratory experiments. The otolith-isotope method of recovering field metabolic rate has recently filled a gap for the bony fishes, linking otolith stable isotope composition to in situ oxygen consumption and experienced temperature estimates. Here, we review the otolith-isotope method focusing on the biochemical and physiological processes that yield estimates of field metabolic rate. We identify a multidisciplinary pathway in the application of this method, providing concrete research goals (field, modeling) aimed at linking individual-level physiological data to higher levels of biological organization. We hope that this review will provide researchers with a transdisciplinary \'roadmap\', guiding the use of the otolith-isotope method to bridge the gap between individual-level physiology, observational field studies, and modeling efforts, while ensuring that in situ data is central in marine policy-making aimed at mitigating climatic and anthropogenic threats.
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