molecular sequencing

  • 文章类型: Journal Article
    人类腺病毒是许多急性疾病的常见原因,角膜结膜炎就是其中之一。急性感染,如果不及时治疗,可以进展到严重程度,从而导致发病率和死亡率。它属于乳腺腺病毒家族,具有七个亚属,即,A-G;其中,腺病毒D8是与角膜结膜炎相关的最常见类型。方法进行了一项以医院为基础的研究,样本是从GBPant医院收集的,布莱尔港,Agarwals医生眼科医院,布莱尔港,从2017年8月到2022年12月。从疑似角膜结膜炎患者的结膜拭子样本收集,然后收集临床数据和人口统计信息。样品经过分子筛选,对阳性样品进行Sanger测序。结果在506个结膜样本中,患病率为24.9%(n=126),在安达曼人群中最常见的类型是腺病毒D8。主要症状为眼部红肿(87.30%,n=110),其次是浇水(81.75%,n=103),眼痛(72.22%,n=91),眼睛瘙痒(61.11%,n=77),和放电(50%,n=63)。结论在临床研究中,眼部感染是被低估的领域之一。然而,该研究显示,在疑似患者中,腺病毒感染的患病率很高。因此,需要对此类感染进行适当的监测和及时诊断,因为它们的严重程度可能导致视力丧失。
    Introduction Human adenoviruses are common causes of many acute illnesses, and keratoconjunctivitis is one of them. Acute infections, if left untreated, can progress to severity, thus causing morbidities and mortalities. It belongs to the mastadenovirus family and is characterized by seven subgenus, i.e., A-G; among those, Adenovirus D8 is the most common type associated with keratoconjunctivitis. Methodology A hospital-based study was conducted, and the samples were collected from GB Pant Hospital, Port Blair, Dr Agarwals Eye Hospital, Port Blair, from August 2017 to December 2022. Clinical data and demographic details were followed by conjunctival swab sample collection from suspected keratoconjunctivitis patients. Samples were subjected to molecular screening, and Sanger sequencing was carried out for positive samples. Results Out of 506 conjunctival samples, a prevalence of 24.9% (n=126) was observed, and the commonest type circulating among the population of Andaman was Adenovirus D8. The major symptoms associated were eye redness (87.30%, n=110), followed by watering (81.75%, n=103), eye pain (72.22%, n=91), eye itching (61.11%, n=77), and discharge (50%, n=63). Conclusion In clinical research, ocular infections are one of the underrated fields. However, the study revealed the high prevalence of adenoviral infection among the suspected patients. Thus, there is a need for proper surveillance and timely diagnosis of such infections, as their severity may lead to loss of vision.
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  • 文章类型: Journal Article
    未经授权:在努力消除艾滋病毒感染者中的丙型肝炎病毒(HCV)感染,了解HCV传播模式可以为指导和评估干预措施提供见解。在这项研究中,我们评估了,在直接作用抗病毒时代,澳大利亚HIV/HCV共感染人群中与HCV系统发育聚集相关的因素。
    UNASSIGNED:在CEASE队列研究中,从2014年至2018年收集的干血斑(DBS)样品中提取HCVRNA。通过聚合酶链反应扩增HCVCore-E2区并进行Sanger测序。使用最大似然系统发育树(1000个自举重复)来识别聚类模式(3%遗传距离阈值)。混合效应逻辑回归用于确定系统发育聚类的相关性。评估的因素是性危险行为,教育,注射吸毒,住房,employment,HIV病毒载量,年龄,性别,和性。
    未经证实:为HCV亚型1a(n=139)和3a(n=63)序列重建了系统发育树,29%(58/202)在一对或一组中。总的来说(n=202),系统发育聚类与年龄较小(40岁以下;调整比值比[aOR]2.52,95%置信区间[CI]1.20-5.29)正相关,在同性恋和双性恋男性中(n=168),与年龄较小呈正相关(aOR2.61,95%CI1.10-6.19),高等教育(AOR2.58,95%CI1.09-6.13),并报告高危性行为(aOR3.94,95%CI1.31-11.84)。随访期间,观察到五次再感染,但没有一个是系统发育簇.
    未经证实:这项研究发现了很大比例的系统发育亲缘关系,主要在年轻人和同性恋和双性恋男性报告高风险的性行为。尽管如此,很少观察到再感染,和再感染表明与已知的集群没有什么关系。这些发现强调了快速开始HCV治疗的重要性,以及系统发育的监测。
    UNASSIGNED: In moving towards the elimination of hepatitis C virus (HCV) infection among people living with HIV, understanding HCV transmission patterns may provide insights to guide and evaluate interventions. In this study, we evaluated patterns of, and factors associated with HCV phylogenetic clustering among people living with HIV/HCV co-infection in Australia in the direct-acting antiviral era.
    UNASSIGNED: HCV RNA was extracted from dried blood spot (DBS) samples collected between 2014 and 2018 in the CEASE cohort study. The HCV Core-E2 region was amplified by a polymerase chain reaction and Sanger sequenced. Maximum likelihood phylogenetic trees (1000 bootstrap replicates) were used to identify patterns of clustering (3% genetic distance threshold). Mixed-effects logistic regression was used to determine correlates of phylogenetic clustering. Factors assessed were sexual risk behavior, education, injecting drug use, housing, employment, HIV viral load, age, sex, and sexuality.
    UNASSIGNED: Phylogenetic trees were reconstructed for HCV subtype 1a (n = 139) and 3a (n = 63) sequences, with 29% (58/202) in a pair or cluster. Overall (n = 202), phylogenetic clustering was positively associated with younger age (under 40; adjusted odds ratio [aOR] 2.52, 95% confidence interval [CI] 1.20-5.29), and among gay and bisexual men (n = 168), was positively associated with younger age (aOR 2.61, 95% CI 1.10-6.19), higher education (aOR 2.58, 95% CI 1.09-6.13), and reporting high-risk sexual behavior (aOR 3.94, 95% CI 1.31-11.84). During follow-up, five reinfections were observed, but none were in phylogenetic clusters.
    UNASSIGNED: This study found a high proportion of phylogenetic relatedness, predominantly among younger people and gay and bisexual men reporting high-risk sexual behavior. Despite this, few reinfections were observed, and reinfections demonstrated little relationship with known clusters. These findings highlight the importance of rapid HCV treatment initiation, together with monitoring of the phylogeny.
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