microbiological

微生物
  • 文章类型: Journal Article
    目的:本研究旨在评估与早发性败血症(EOS)和晚发性败血症(LOS)相关的细菌感染的患病率和抗菌药物敏感性模式。
    方法:这项描述性回顾性监测研究是对所有入住新生儿ICU的细菌性败血症新生儿进行的,从Tawam医院的无菌部位(脑脊液或血液)中分离出阳性培养物,AlAin,阿布扎比酋长国,阿联酋,从2012年1月到2021年12月。进行抗菌药物敏感性分析。
    结果:与EOS(5.56%)相比,LOS(94.43%)的发生率更高。最流行的分离株(59.2%)是革兰氏阳性菌,革兰阴性菌占40.8%。主要分离株包括凝固酶阴性葡萄球菌(CONS,40.98%),克雷伯菌(16.04%),金黄色葡萄球菌(8.46%),大肠杆菌(8.24%),假单胞菌(7.57%),和B组链球菌(GBS,5.12%)。CONS在LOS病例中占主导地位(42.9%),而GBS是EOS病例的主要病原体(44%)。
    结论:我们观察到CONS对氨苄西林的耐药水平降低,青霉素,克林霉素,红霉素,夫西地酸,庆大霉素,苯唑西林,利福平,和甲氧苄啶/磺胺。金黄色葡萄球菌对红霉素的耐药性增加,夫西地酸,庆大霉素,和左氧氟沙星,虽然大肠杆菌对头孢菌素的耐药性下降,庆大霉素,和甲氧苄啶/磺胺。根据经验,目前使用的抗生素似乎可以充分覆盖导致早期和晚期新生儿感染的最普遍的细菌。
    OBJECTIVE: This study aims to assess the prevalence and antimicrobial susceptibility patterns of bacterial infections associated with both early-onset sepsis (EOS) and late-onset sepsis (LOS).
    METHODS: This descriptive retrospective surveillance research was conducted on all neonates admitted to the neonatal ICU with bacterial sepsis, where positive cultures were isolated from sterile sites (either cerebrospinal fluid or blood) at Tawam Hospital, Al Ain, Emirate of Abu Dhabi, UAE, from January 2012 and December 2021. Antimicrobial susceptibility analysis was performed.
    RESULTS: The incidence of LOS (94.43%) was higher compared to EOS (5.56%). The most prevalent isolates (59.2%) were gram-positive bacteria, with gram-negative bacteria accounting for 40.8%. The leading isolates included coagulase-negative Staphylococci (CONS, 40.98%), Klebsiella (16.04%), Staphylococcus aureus (8.46%), Escherichia coli (8.24%), Pseudomonas (7.57%), and Group B Streptococcus (GBS, 5.12%). CONS were predominant in LOS cases (42.9%), while GBS was the main pathogen in EOS cases (44%).
    CONCLUSIONS: We observed reduced resistance levels of CONS against ampicillin, benzylpenicillin, clindamycin, erythromycin, fusidic acid, gentamicin, oxacillin, rifampicin, and trimethoprim/sulfa. S. aureus exhibited increased resistance to erythromycin, fusidic acid, gentamicin, and levofloxacin, while E. coli demonstrated decreased resistance against cephalothin, gentamicin, and trimethoprim/sulfa. The antibiotics currently employed empirically appear to provide adequate coverage against the most prevalent bacteria causing early- and late-onset neonatal infections.
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  • 文章类型: Journal Article
    Milk is a complete and highly nutritious source of food for human beings. However, in many developing countries, including Ethiopia, the quality of milk products has become a major health concern for consumers, particularly for infants and children. Therefore, the aim of the present study was to assess the quality of raw and pasteurized milk marketed in Gondar city, Northwest Ethiopia. A laboratory-based cross-sectional study was conducted on 90 milk samples. The samples were chosen using a simple random sampling technique. For statistical analysis, ANOVA and the Pearson correlation coefficient were used. The specific gravity of pasteurized milk, farm milk, and milk vendors were found to be 1.021, 1.027, and 1.026, respectively. Farm milk, milk vendors, and pasteurized milk had fat contents of 3.38%, 3.22%, and 3.09%, respectively. The total bacterial count in pasteurized milk, farm milk, and milk vendors was found to be 7.08, 6.73, and 6.94 log10 CFU/mL, respectively. In raw milk, hydrogen peroxide (7.7%), formalin (7.7%), and water (3.8%) were found, whereas in pasteurized milk, hydrogen peroxide (50%), formalin (50%), and water (19.8%) were found. Based on the findings of this study, the quality of both raw and pasteurized milk was found to be poor as per the milk quality standards. This may cause significant public health-related problems. Therefore, an appropriate intervention should be conducted to improve the quality of milk.
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  • 文章类型: Journal Article
    烧伤是全世界儿童死亡和残疾的主要原因之一,伤口感染是烧伤治疗的一大挑战。我们对小儿烧伤患者的创面感染进行了回顾性分析,以揭示其临床资料,调查病原菌的分布和耐药模式,为治疗提供参考。因此,330名患有伤口感染的小儿烧伤患者;65.8%(217/330)<2岁。大多数损伤是烫伤,涉及<10%的全身表面积(TBSA),主要引起II度烧伤和II+III度烧伤。分离出三百五十九株病原菌,主要病原菌为金黄色葡萄球菌(45.4%)和铜绿假单胞菌(18.7%)。与2017年至2021年分离的金黄色葡萄球菌和铜绿假单胞菌相比,2012年至2016年分离的金黄色葡萄球菌和铜绿假单胞菌更可能具有多重耐药性,因为它们与≥4个临床和实验室标准研究所(CLSI)类别的耐药性显着相关(分别为p=0.040和0.006)。总之,<2岁儿童是小儿烧伤创面感染的主要患者。从伤口分离的主要细菌是金黄色葡萄球菌和铜绿假单胞菌,多电阻呈下降趋势。
    Burn is one of the leading causes of death and disability in children worldwide, and wound infection is an excellent challenge in burn treatment. We performed a retrospective review of pediatric burn patients with wound infections to reveal their clinical data and investigate pathogens\' distribution and drug resistance patterns to provide references for treatment. As a result, 330 pediatric burn patients with wound infections were identified; 65.8% (217/330) were < 2 years old. Most of the injuries were scalded and involved <10% total body surface area in size (TBSA), mainly causing II-degree burn and II + III-degree burn. Three hundred and fifty nine strains of pathogens were isolated, the primary pathogens were Staphylococcus aureus (45.4%) and Pseudomonas aeruginosa (18.7%). Both S. aureus and P. aeruginosa isolated from 2012 to 2016 were more likely to be multi-resistant than those isolated from 2017 to 2021, as they were significantly associated with resistance to ≥4 Clinical and Laboratory Standard Institute (CLSI) classes (p = 0.040 and 0.006, respectively). In conclusion, children aged <2 years old were the main pediatric burn patients with wound infections. The primary bacteria isolated from the wound were S. aureus and P. aeruginosa, with a decreasing tendency of multi-resistance.
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  • 文章类型: Journal Article
    背景:继发于感染的多器官功能障碍综合征是烧伤患者死亡的主要原因。血流感染(BSI)与烧伤患者预后呈负相关。宏基因组下一代测序(mNGS)可以检测许多潜在的病原体,对于严重烧伤患者可能更有价值。
    方法:我们回顾性研究了mNGS在描述BSI严重烧伤患者的临床和微生物特征方面的实用性。我们将mNGS与血培养进行了比较。
    结果:14例患者(127份血液样本)出现71次BSI发作,其中有102种独特的致病病原体。身体总表面积的中值为93%。总体90天死亡率为43%。总的来说,17次(23.9%)发作为多微生物,61(86.1%)起始于伤口。总的来说,62/71例(87%)显示mNGS阳性结果,而42/71例(59%)使用血培养显示阳性结果。我们发现mNGS的表现优于文化,特别是在真菌方面(27%vs.6%,p<0.0001)。
    结论:大面积严重烧伤患者BSI和多重微生物的发生率较高。mNGS在诊断此类患者的真菌感染和合并感染方面具有潜在价值。此外,mNGS可能为复杂BSI的抗生素治疗提供独特的指导。
    BACKGROUND: Multiple organ dysfunction syndrome secondary to infection is the leading cause of death in burn patients. Bloodstream infection (BSI) and the prognosis of burn patients are negatively correlated. Metagenomic next-generation sequencing (mNGS) can detect many potential pathogens and may be more valuable for patients with severe burns.
    METHODS: We retrospectively explored the utility of mNGS in describing the clinical and microbial characteristics of severely burned patients with BSI. We compared mNGS with blood culture.
    RESULTS: Fourteen patients (127 blood samples) developed 71 episodes of BSIs with 102 unique causative pathogens. The median total body surface area was 93%. The overall 90-day mortality was 43%. In total, 17 (23.9%) episodes were polymicrobial, and 61 (86.1%) episodes originated from the wound. In total, 62/71 cases (87%) showed positive findings by mNGS, while 42/71 cases (59%) showed positive findings using blood culture. We found that mNGS outperformed culture, especially in terms of fungi (27% vs. 6%, p < 0.0001).
    CONCLUSIONS: The incidence of BSI and polymicrobial in patients with large-area severe burns is high. mNGS has potential value in the diagnosis of fungal infections and coinfections in such patients. In addition, mNGS may provide unique guidance for antibiotic therapy in complicated BSI.
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  • 文章类型: Journal Article
    OBJECTIVE: To test the hypothesis that in the daily routine of a specialist clinic in endodontics that irrigation during root canal preparation with 3.0% NaOCl will result in fewer postoperative samples with cultivable bacteria than irrigation with 0.5% buffered NaOCl but, at the same time, will not result in a higher frequency of postoperative pain nor swelling.
    METHODS: Two hundred ninety-eight patients were enrolled in the study and were randomly assigned into two groups - 0.5% NaOCl and 3% NaOCl. All endodontic diagnoses were included. Root canal treatment was performed, and bacterial sampling was carried out prior to root filling. The patients were requested to complete a form regarding pain and swelling seven days postoperatively. Fisher\'s exact test, Mann-Whitney U-test, Mantel-Haenszel chi-squared and the chi-squared test with a significance level of P < 0.05 were used for statistical analysis. Multivariable logistic regression was used to adjust for confounders.
    RESULTS: In the 0.5% NaOCl group, 18 (13.4%) of the root canal samples were positive; in the 3% NaOCl group, the corresponding number was 24 (18.6%). The mean difference of -5.2% (95% CI: -14.8 to 4.4) was not significant (P = 0.33). In the 0.5% NaOCl group, 57 (53.8%) patients reported some pain; in the 3% group, the corresponding number was 56 (53.3%). The mean difference of 0.4 (95% CI: -14.0 to 14.8) was not significant (P = 1.0). In the 0.5% NaOCl group, 5 (5.1%) patients reported swelling; in the 3% NaOCl group, the corresponding number was 18 (17.8%). The mean difference was 12.7 (95% CI: 3.1-22.4), which was significant (P = 0.0084).
    CONCLUSIONS: The difference in the concentration of NaOCl (0.5% vs 3%) had no significant impact on the number of positive cultures and did not influence either the frequency or the magnitude of postoperative pain. A significantly higher incidence of postoperative swelling was recorded for patients who received a greater concentration of NaOCl (3%).
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  • 文章类型: Journal Article
    OBJECTIVE: The aim of the present clinical randomized split-mouth study was to evaluate the effectiveness and efficiency of an Er:YAG laser for caries removal in primary molars, microbiological dentin analysis, and clinical restorations after 1 year in 29 children.
    METHODS: The children\'s teeth were randomized into two groups: (I) an Er:YAG laser group and (II) a bur preparation group. The efficiency of the treatments (the time necessary for the removal of carious tissue) was evaluated based on the time spent on caries removal in the deciduous molars. The effectiveness (caries removal capacity) of the caries removal was determined by means of a blind test in which the examiner performed a tactile and visual examination of the dentin. Microbiological analysis was performed by counting the Streptococcus mutans and Lactobacillus sp in the remaining dentin. Clinical analysis of restorations was performed using the USPHS method in combination with photographs of restored teeth, 7 days after the restorative procedure and again after 1 year. All cavities were restored with the Adper Single Bond 2/Filtek Z350 system. The obtained data were analyzed with a significance level of 5 %.
    RESULTS: The Er:YAG laser was less effective and had the same efficacy as bur preparation during caries removal at the pulpal wall of deciduous molars. In the surrounding walls, bur preparation was the more effective method. Regardless of the method employed, the affected dentin in the pulpal wall had similar amounts of S. mutans and Lactobacillus sp. The restorations were clinically accepted by the USPHS method over a 1-year period.
    CONCLUSIONS: It can be concluded that caries removal with an Er:YAG laser has no influence on the clinical behavior of restorations.
    CONCLUSIONS: Irradiation with an Er:YAG laser is appropriate for caries removal in primary teeth.
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