heterozygosity

杂合性
  • 文章类型: Case Reports
    我们通过TosohHLC-723G11报道了HbE杂合性对HbA1c值的影响。
    一名45岁的中国女性在健康检查中出现3.7%的HbA1c异常低(3.9%-6.1%)。空腹血糖正常。血常规及血清胆红素均在正常范围内。通过TosohHLC-723G11测定HbA1c。色谱上A1c和A0之间存在异常峰。血红蛋白电泳显示HbE区占25.1%。β-地中海贫血相关基因(突变型)为βEM/N,相关基因CD26(A>G)发生突变。OGTT提示糖尿病前期。
    HbE杂合性可能会降低异常色谱图的HbA1c值,由TosohHLCG11分析仪测定。TosohHLCG11分析仪可以很好地识别HbE变异。在这种情况下,应进行进一步的血糖相关检测,以避免漏诊.然而,需要大量的样本来证实这一结论。
    We report the effect of Hb E heterozygosity on HbA1c value by the Tosoh HLC-723G11.
    A 45 years-old Chinese woman presented with an abnormally low HbA1c level of 3.7% (3.9%-6.1%) in a health examination. Fasting blood glucose was normal. Blood routine examination and serum bilirubin were in the normal range. HbA1c was determined by Tosoh HLC-723G11. There was an abnormal peak between A1c and A0 on the chromatogram. Hemoglobin electrophoresis indicated that the Hb E zone accounted for 25.1%. The β-thalassemia-related genes (mutant type) were βE M/N, and the related gene CD26 (A > G) was mutated. OGTT indicated prediabetes.
    Hb E heterozygosity may reduce HbA1c value with abnormal chromatograms, as determined by a Tosoh HLC G11 analyzer. The Tosoh HLC G11 analyzer can well identify Hb E variation. In this case, further blood glucose-related tests should be performed to avoid missed diagnoses. However, a large sample size is needed to confirm this conclusion.
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  • 文章类型: Journal Article
    在患有上皮性卵巢癌(EOC)的女性中,很少报道BRCA1和BRCA2基因中致病性变异的携带者为双突变(BRCA1/2DM)。
    我们回顾了英文文献,并询问了三个报告携带BRCA1/2DM的EOC患者的资料库。将36例携带种系BRCA1/2DM的EOC患者的临床病理参数与COEUR队列中具有已知种系BRCA1/BRCA2突变携带者状态的高级别浆液性EOC女性进行了比较(n=376例非携带者,n=65BRCA1和n=38BRCA2)。评估的临床病理参数是诊断时的年龄,疾病阶段,杂合性丢失,突变类型,免疫组织化学谱,进展发生和生存。
    BRCA1/2DM患者诊断年龄中位数为51.9岁,类似于BRCA1突变携带者(49.7年,p=.58),并且比BRCA2突变携带者年轻(58.1岁,p=.02)。大多数患者被诊断为晚期(III-IV;82%),并且是创始人/频繁突变的携带者(69%)。组织免疫染色显示无孕激素受体表达和低上皮内炎症。5年生存率(60%)明显低于BRCA2突变携带者(76%,p=.03),但不是BRCA1突变携带者(51%,p=.37)。
    我们的数据表明两种突变都有一定的共显性效应,但这些患者的预后与BRCA1突变携带者的预后因素更为相似。
    Carriers of pathogenic variants in both BRCA1 and BRCA2 genes as a double mutation (BRCA1/2 DM) have been rarely reported in women with epithelial ovarian cancer (EOC).
    We reviewed the English literature and interrogated three repositories reporting EOC patients carrying BRCA1/2 DM. The clinicopathological parameters of 36 EOC patients carrying germline BRCA1/2 DM were compared to high-grade serous EOC women of the COEUR cohort with known germline BRCA1/BRCA2 mutation carrier status (n = 376 non-carriers, n = 65 BRCA1 and n = 38 BRCA2). Clinicopathological parameters evaluated were age at diagnosis, stage of disease, loss of heterozygosity, type of mutation, immunohistochemistry profile, progression occurrence and survival.
    Median age at diagnosis of BRCA1/2 DM patients was 51.9 years, similar to BRCA1 mutation carriers (49.7 years, p = .58) and younger than BRCA2 mutation carriers (58.1 years, p = .02). Most patients were diagnosed at advanced stage (III-IV; 82%) and were carriers of founder/frequent mutations (69%). Tissue immunostainings revealed no progesterone receptor expression and low intraepithelial inflammation. The 5-year survival rate (60%) was significantly lower than that of BRCA2 mutation carriers (76%, p = .03) but not of BRCA1 mutation carriers (51%, p = .37).
    Our data suggests some co-dominant effect of both mutations but the outcome of these patients more closely resembled that of BRCA1 mutation carriers with poor prognosis factors.
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  • 文章类型: Comparative Study
    Thanks to a dramatic reduction in sequencing costs followed by a rapid development of bioinformatics tools, genome assembly and annotation have become accessible to many researchers in recent years. Among tetrapods, birds have genomes that display many features that facilitate their assembly and annotation, such as small genome size, low number of repeats and highly conserved genomic structure. However, we found that high genomic heterozygosity could have a great impact on the quality of the genome assembly of the thick-billed murre (Uria lomvia), an arctic colonial seabird. In this study, we tested the performance of three genome assemblers, ray/sscape, soapdenovo2 and platanus, in assembling the highly heterozygous genome of the thick-billed murre. Our results show that platanus, an assembler specifically designed for heterozygous genomes, outperforms the other two approaches and produces a highly contiguous (N50 = 15.8 Mb) and complete genome assembly (93% presence of genes from the Benchmarking Universal Single Copy Ortholog [BUSCO] gene set). Additionally, we annotated the thick-billed murre genome using a homology-based approach that takes advantage of the genomic resources available for birds and other taxa. Our study will be useful for those researchers who are approaching assembly and annotation of highly heterozygous genomes, or genomes of species of conservation concern, and/or who have limited financial resources.
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  • 文章类型: Journal Article
    To enhance their conservation value, several hundred islands worldwide have been cleared of invasive alien rats, Rattus spp. One of the largest projects yet undertaken was on 43 km(2) Henderson Island in the Pitcairn group, South Pacific, in August 2011. Following massive immediate mortality, a single R. exulans was observed in March 2012 and, subsequently, rat numbers have recovered. The survivors show no sign of resistance to the toxicant used, brodifacoum. Using pre- and post-operation rat tissue samples from Henderson, plus samples from around the Pacific, we exclude re-introduction as the source of continued rat presence. Microsatellite analysis of 18 loci enabled comparison of genetic diversity of Henderson rats before and after the bait drop. The fall in diversity measured by allele frequency change indicated that the bottleneck (N e) through which the breeding population passed was probably around 50 individuals, representing a census population of about 60-80 animals. This is the first failed project that has estimated how close it was to success.
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