founder effect

创始人效应
  • 文章类型: Systematic Review
    阿尔茨海默病(AD)是痴呆的最常见原因,以认知功能逐渐丧失为特征,β-淀粉样斑块和神经原纤维缠结是其主要病理发现。虽然这种疾病主要影响老年人,c.5-10%的病例是由于PSEN1,PSEN2和APP突变,主要与疾病的早期发作有关。A413E(rs63750083)PSEN1变体,2001年发现,与早发性阿尔茨海默病(EOAD)有关。虽然对该疾病的临床表现和特定特征知之甚少,报告了显著的临床异质性,痉挛性轻瘫(SP)的发生率很高,语言障碍,以及精神病和运动表现。本范围审查旨在综合与PSEN1的A431E变体相关的发现。在搜索中,我们遵循了系统评价和荟萃分析的首选报告项目(PRISMA)声明和Arksey和O'Malley提出的指南。我们在五个数据库和一个搜索引擎中搜索并确定了247项研究,包括2001年至2021年PSEN1的A431E变体。删除副本后,并应用纳入标准,最终纳入42项研究。我们考虑了用定性方法分析数据的叙事综合。鉴于研究样本的构象,我们将结果分为仅对携带A431E的参与者进行的结果(七项研究),具有PSEN变异的受试者(11项研究),以及PSEN1、PSEN2和APP中与EOAD相关的变异(24项研究)。由此产生的综合表明,大多数研究涉及处于临床前阶段的墨西哥和墨西哥裔美国人参与者。分析的文章包括遗传学等类别的载体特征,临床,成像技术,神经心理学,神经病理学,和生物标志物。一些研究还考虑了家庭成员的“信念和照顾者”的经历。在EOAD相关基因变体的研究和携带者样本中的异质性不允许发现的推广。未来的研究应侧重于报告载体特征随时间进展的数据,并独立报告结果或在变体之间进行比较。
    Alzheimer\'s disease (AD) is the most common cause of dementia, characterized by progressive loss of cognitive function, with β-amyloid plaques and neurofibrillary tangles being its major pathological findings. Although the disease mainly affects the elderly, c. 5-10% of the cases are due to PSEN1, PSEN2, and APP mutations, principally associated with an early onset of the disease. The A413E (rs63750083) PSEN1 variant, identified in 2001, is associated with early-onset Alzheimer\'s disease (EOAD). Although there is scant knowledge about the disease\'s clinical manifestations and particular features, significant clinical heterogeneity was reported, with a high incidence of spastic paraparesis (SP), language impairments, and psychiatric and motor manifestations. This scoping review aims to synthesize findings related to the A431E variant of PSEN1. In the search, we followed the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement and the guidelines proposed by Arksey and O\'Malley. We searched and identified 247 studies including the A431E variant of PSEN1 from 2001 to 2021 in five databases and one search engine. After the removal of duplicates, and apply inclusion criteria, 42 studies were finally included. We considered a narrative synthesis with a qualitative approach for the analysis of the data. Given the study sample conformation, we divided the results into those carried out only with participants carrying A431E (seven studies), subjects with PSEN variants (11 studies), and variants associated with EOAD in PSEN1, PSEN2, and APP (24 studies). The resulting synthesis indicates most studies involve Mexican and Mexican-American participants in preclinical stages. The articles analyzed included carrier characteristics in categories such as genetics, clinical, imaging techniques, neuropsychology, neuropathology, and biomarkers. Some studies also considered family members\' beliefs and caregivers\' experiences. Heterogeneity in both the studies found and carrier samples of EOAD-related gene variants does not allow for the generalization of the findings. Future research should focus on reporting data on the progression of carrier characteristics through time and reporting results independently or comparing them across variants.
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  • 文章类型: Journal Article
    BRCA1/2突变谱显示显著的种族间变异。我们首次分析了340名具有BRCA1/2相关疾病临床体征的白俄罗斯癌症患者的整个BRCA1/2编码区,包括168名患有双侧和/或早发性乳腺癌(BC)的女性,104名卵巢癌患者和68名患有涉及BC和/或OC的多原发恶性肿瘤的受试者。在98例(29%)女性中检测到BRCA1/2致病等位基因,其中67个(68%)由创始人等位基因代表。与其他相关研究的系统比较表明,在白俄罗斯观察到的创始人效应是全球观察到的最高估计之一。这些发现令人惊讶,鉴于白俄罗斯的人口在整个历史上都没有经历过地理或文化隔离。
    The spectrum of BRCA1/2 mutations demonstrates significant interethnic variations. We analyzed for the first time the entire BRCA1/2 coding region in 340 Belarusian cancer patients with clinical signs of BRCA1/2-related disease, including 168 women with bilateral and/or early-onset breast cancer (BC), 104 patients with ovarian cancer and 68 subjects with multiple primary malignancies involving BC and/or OC. BRCA1/2 pathogenic alleles were detected in 98 (29%) women, with 67 (68%) of these being represented by founder alleles. Systematic comparison with other relevant studies revealed that the founder effect observed in Belarus is among the highest estimates observed worldwide. These findings are surprising, given that the population of Belarus did not experience geographic or cultural isolation throughout history.
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  • 文章类型: Case Reports
    扩张性发育不良(DTD)是一种罕见的骨软骨发育不良,其特征是身材矮小和关节发育不良。DTD是由SLC26A2中的突变引起的,并且在芬兰人群中特别常见。然而,芬兰的疾病发病率和受影响个体的临床特征最近尚未被研究。这项基于注册的研究旨在调查芬兰DTD的当前发病率,表征患有DTD的儿科受试者的国家队列并回顾疾病相关文献。SLC26A2相关骨骼发育不良的受试者,出生在2000年至2020年之间,从骨骼发育不良登记和医院患者登记中确定,并审查了他们的临床和分子数据。确定了14名受试者。其中12个被表型分类为DTD,2个被分类为DTD,作为隐性多发性骨phy发育不良(rMED)。从有遗传数据的受试者中,75%(9/12)是纯合的芬兰创始人突变c.-262T>C。具有rMED表型的两个受试者对于p.Arg279Trp和p.Thr512Lys变体是复合杂合的。我们队列中的可变表型突出了广泛的临床特征,从非常严重的DTD形式到较温和的DTD和rMED形式。在过去的几十年中,DTD在芬兰的发病率显着下降,很可能是由于产前诊断增加。
    Diastrophic dysplasia (DTD) is a rare osteochondrodysplasia characterized by short-limbed short stature and joint dysplasia. DTD is caused by mutations in SLC26A2 and is particularly common in the Finnish population. However, the disease incidence in Finland and clinical features in affected individuals have not been recently explored. This registry-based study aimed to investigate the current incidence of DTD in Finland, characterize the national cohort of pediatric subjects with DTD and review the disease-related literature. Subjects with SLC26A2-related skeletal dysplasia, born between 2000 and 2020, were identified from the Skeletal dysplasia registry and from hospital patient registry and their clinical and molecular data were reviewed. Fourteen subjects were identified. Twelve of them were phenotypically classified as DTD and two, as recessive multiple epiphyseal dysplasia (rMED). From the subjects with available genetic data, 75% (9/12) were homozygous for the Finnish founder mutation c.-26+2T>C. Two subjects with rMED phenotype were compound heterozygous for p.Arg279Trp and p.Thr512Lys variants. The variable phenotypes in our cohort highlight the wide spectrum of clinical features, ranging from a very severe form of DTD to milder forms of DTD and rMED. The incidence of DTD in Finland has significantly decreased over the past decades, most likely due to increased prenatal diagnostics.
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  • 文章类型: Journal Article
    Aromatic l-amino acid decarboxylase deficiency (AADCD) is a rare inherited disease prevalent in South East Asia. This disease is due to the founder mutation IVS 6 + 4A > T (c.714 + 4A > T), which accounts for most alleles. Patients with this mutation have severe phenotypes. About 90 % of these patients in South East Asia do not have head control and cannot sit, stand, or speak from birth to the time of observation. In 2012, a gene study to treat these patients with intraputamen injection of adeno-associated virus2-human AADC showed prominent motor improvement and an increased PDMS-2 score 12 months after treatment. In addition, systemic gene therapy in a mouse model of AADCD achieved widespread correction of the Ddc gene. In this article, we review the natural history, clinical course, and treatment effects seen in these clinical and mouse studies. Future studies focusing on noninvasive viral vector delivery or alternative emerging treatments may also benefit patients with AADCD.
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  • 文章类型: Case Reports
    历史上,BRCA1/2(OMIM113705;OMIM600185)基因中的三个创始人突变一直是阿什肯纳齐犹太人(AJ)人群癌症风险的焦点.然而,在AJ血统的个体中,还有几个额外的突变与癌症易感性增加相关.
    我们报告了三名患者,他们在对该人群中的个体进行遗传性癌症基因检测时,需要记住这些额外的创始人突变。本文中的所有基因序列均与基于人类基因组构建的GRCh37/UCSChg19的参考序列进行比对。
    文献综述讨论了在BRCA1,BRCA2,CHEK2(OMIM604373)中具有10个遗传性癌症AJ创始人突变中的1个的综合风险为12.36%-20.83%,APC(OMIM611731),MSH2(OMIM609309),MSH6(OMIM600678),AJ血统个体的GREM1(OMIM603054)基因。
    我们建议对该人群中的所有10个AJ创始人癌症易感性突变进行标准筛查,以确保适当的癌症风险管理和级联测试。
    Historically, three founder mutations in the BRCA1/2 (OMIM 113705; OMIM 600185) genes have been the focus of cancer risks within the Ashkenazi Jewish (AJ) population. However, there are several additional mutations associated with increased susceptibility to cancer in individuals of AJ ancestry.
    We report three patients who exemplify the need to keep these additional founder mutations in mind when pursuing hereditary cancer genetic testing of individuals in this population. All gene sequences in this paper were aligned to reference sequences based on human genome build GRCh37/UCSC hg19.
    review of the literature discusses that the combined risk is 12.36%-20.83% forhaving 1 of the 10 hereditary cancer AJ founder mutations in the BRCA1, BRCA2, CHEK2 (OMIM 604373), APC (OMIM 611731), MSH2 (OMIM 609309), MSH6 (OMIM 600678), and GREM1 (OMIM 603054) genes for individuals of AJ ancestry.
    We recommend testing for all 10 of these AJ founder cancer susceptibility mutations for individuals within this population as standard screening in order to ensure appropriate cancer risk management and cascade testing.
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  • 文章类型: Case Reports
    肢体带型肌营养不良症(LGMD)2G型是一种罕见的肌肉疾病,仅在全球少数患者中描述,由TCAP基因突变引起的,编码蛋白质的端黄素。它的特点是与下肢远端受累相关的近端肢体肌肉无力,从人生的第一个或第二个十年开始。我们描述了一个37岁的希腊裔妇女的案例,受近端的下肢无力影响。未检测到心脏或呼吸受累。肌肉活检显示肌病性改变伴有I型纤维肥大,细胞质液泡,脂质超负荷,多个中央核和纤维分裂;超微结构检查显示代谢异常。下一代测序分析检测到TCAP基因的纯合移码突变(c.90_91del),以前在一个土耳其家庭中描述过。免疫染色和Western印迹分析显示完全不存在端黄素。有趣的是,包含TCAP基因的10Mb基因组区域的单核苷酸多态性分析显示,希腊和土耳其患者均具有纯合单倍型,因此表明TCAP基因c.90_91del突变在地中海地区的这一部分可能的创始人效应。
    Limb girdle muscular dystrophy (LGMD) type 2G is a rare form of muscle disease, described only in a few patients worldwide, caused by mutations in TCAP gene, encoding the protein telethonin. It is characterised by proximal limb muscle weakness associated with distal involvement of lower limbs, starting in the first or second decade of life. We describe the case of a 37-year-old woman of Greek origin, affected by disto-proximal lower limb weakness. No cardiac or respiratory involvement was detected. Muscle biopsy showed myopathic changes with type I fibre hypotrophy, cytoplasmic vacuoles, lipid overload, multiple central nuclei and fibre splittings; ultrastructural examination showed metabolic abnormalities. Next generation sequencing analysis detected a homozygous frameshift mutation in the TCAP gene (c.90_91del), previously described in one Turkish family. Immunostaining and Western blot analysis showed complete absence of telethonin. Interestingly, Single Nucleotide Polymorphism analysis of the 10 Mb genomic region containing the TCAP gene showed a shared homozygous haplotype of both the Greek and the Turkish patients, thus suggesting a possible founder effect of TCAP gene c.90_91del mutation in this part of the Mediterranean area.
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  • 文章类型: Case Reports
    BACKGROUND: Carnitine-acylcarnitine translocate deficiency (CACTD) is a rare and life-threatening, autosomal recessive disorder of fatty acid β-oxidation characterized by hypoketotic hypoglycemia, hyperammonemia, cardiomyopathy, liver dysfunction, and muscle weakness; culminating in early death. To date, CACTD cases screened from the Chinese mainland population, especially patient with compound heterozygote with c.199-10T>G and a novel c.1A>G mutation in the SLC25A20 gene has never been described.
    UNASSIGNED: Herein, we report 2 neonatal cases of CACTD identified from the mainland China. These 2 patients were presented with severe metabolic crisis and their clinical conditions deteriorate rapidly and both died of cardiorespiratory collapse in the first week of life. We present the clinical and biochemical features of 2 probands and a brief literature review of previously reported CACTD cases with the c.199-10T>G mutation.
    UNASSIGNED: The acylcarnitine profiles by tandem-mass-spectrometry and the mutation analysis of SLC25A20 gene confirmed the diagnosis of CACTD in both patients. Mutation analysis demonstrated that patient No. 1 was homozygous for c.199-10T>G mutation, while patient No. 2 was a compound heterozygote for 2 mutations, a maternally-inherited c.199-10T>G and a paternally-inherited, novel c.1A>G mutation.
    METHODS: Both patients were treated with an aggressive treatment regimen include high glucose and arginine infusion, respiratory, and circulatory support.
    RESULTS: The first proband died 3 days after delivery due to sudden cardiac arrest. The second patient\'s clinical condition, at one time, was improved by high glucose infusion, intravenous arginine, and circulatory support. However, the patient failed to wean from mechanical ventilation. Unfortunately, her parents refused further treatment due to fear of financial burdens. The patient died of congestive heart failure in the 6th day of life.
    CONCLUSIONS: We report the first 2 cases of CACTD identified from the mainland China. Apart from a founder mutation c.199-10T>G, we identified a novel c.1A>G mutation. Patients with CACTD with a genotype of c.199-10T>G mutation usually presents with a severe clinical phenotype. Early recognition and appropriate treatment is crucial in this highly lethal disorder. This case series highlights the importance of screening for metabolic diseases including CACTD in cases of sudden infant death and unexplained abrupt clinical deterioration in the early neonatal period.
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  • 文章类型: Journal Article
    OBJECTIVE: 17α-hydroxylase/17,20-lyase deficiency is a rare form of congenital adrenal hyperplasia, characterized by hypertension and sexual infantilism and caused by loss-of-function mutations in CYP17A1. This study investigated the clinical and molecular characteristics of six adults with 17α-hydroxylase/17,20-lyase deficiency and the functional consequences of a novel CYP17A1 mutation.
    METHODS: Six phenotypic females, three with 46,XY and three with 46,XX karyotypes, presented with primary amenorrhea and hypertension. All had elevated levels of plasma adrenocorticotropic hormone, serum gonadotropin, progesterone, and 11-deoxycorticosterone, and reduced testosterone and dehydroepiandrosterone sulfate (DHEA-S). All coding exons and flanking intronic sequences of CYP17A1 were directly sequenced using genomic DNA. Wild-type and mutant CYP17A1 cDNAs were inserted into the pcDNA3.1/V5-His-P450c17 vector, and transiently expressed in COS-7 cells. This was followed by an assessment of 17α-hydroxylase and 17,20-lyase activities by measuring the conversions of progesterone to 17-hydroxyprogesterone and 17-hydroxypregnenolone to DHEA.
    RESULTS: The mutation analysis identified one patient with compound heterozygosity for p.H373L and p.W406L, one with compound heterozygosity for p.H373L and p.A174E, three with compound heterozygosity for p.Y329fs and p.H373L, and one with homozygosity for p.H373L. An in vitro functional analysis of the novel p.W406L mutation revealed a complete loss of 17α-hydroxylase/17, 20-lyase activities.
    CONCLUSIONS: p.H373L was the most common mutation among these Korean patients, consistent with the high allele frequency of p.H373L in Chinese and Japanese populations, suggesting possible founder effects in Asian countries. The novel p.W406L mutation caused a complete loss of both catalytic activities, indicating that this amino acid is critical for P450c17 function.
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  • 文章类型: Journal Article
    Few studies have reported on the comprehensive BRCA1/2 mutation analyses of hereditary breast cancer (HBC) families of French Canadian descent. Here we report the investigation of 82 families with at least 3 cases of breast cancer evaluated for mutations by DNA sequencing and/or multiplex ligation-dependent probe amplification (MLPA) assay. DNA sequencing identified pathogenic mutations in 37 (45.1%) families, of which 70.2% were one of three recurring mutations (BRCA1:R1443X, BRCA2:8765delAG, and BRCA2:E1953X) frequently reported in this founder population; and variants of uncertain clinical significance in 7 (8.5%) families of which two harbored BRCA2:E3002K. MLPA analysis of the 38 DNA sequence-negative families did not reveal any large rearrangements in BRCA1/2. A phenotypic characterization of the cancer families based on pathogenic mutation status revealed that there were significantly fewer very young age at diagnosis breast cancer cases (<36 years) in mutation-negative families (5.9%, 9 of 153) than in BRCA1 (22.8%, 13 of 57; P = 0.0003) or BRCA2 (22.9%, 27 of 118; P < 1× 10E5) mutation-positive families. There were significantly more mutation-positive families (29 of 36, 80.6%) with a very young age of onset of breast cancer case than those that did not (8 of 39, 20.5%) (P < 10E6). The comprehensive mutation analysis of BRCA1/2 suggests that genomic rearrangements are unlikely to account for sequence-negative HBC families and affirms that the presence of a very young age of diagnosis of breast cancer is strongly predictive of mutation carrier status of French Canadian HBC families.
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  • 文章类型: Journal Article
    Pelger-HuEt异常(PHA),常染色体显性血液学特征表现为中性粒细胞核低分枝和染色质分布改变.层粘连蛋白B受体基因突变,甾醇还原酶家族的一个成员已被确定为根本原因。由于其无症状性质或缺乏观察者熟悉,PHA经常被忽视。在这次审查中,我们概述了主要的病理生理学,临床,PHA的形态和功能方面。此外,我们强调了全面评估这种层板病的重要性.
    Pelger-Huët anomaly (PHA), an autosomal dominant haematological trait is characterised by neutrophil nuclear hypolobulation and modified chromatin distribution. Mutations in the lamin B receptor gene, a member of the sterol reductase family have been identified as the underlying cause. Due to its asymptomatic nature or lack of observer familiarity, PHA is often overlooked. In this review, we give an overview of the main pathophysiological, clinical, morphological and functional aspects of PHA. Furthermore, we highlight the importance of a comprehensive approach to the assessment of this laminopathy.
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