co-culture

共同文化
  • 文章类型: Journal Article
    Asbestos poses a substantial environmental health risk, and biological treatment offers a promising approach to mitigate its impact by altering its chemical composition. However, the dynamics of microbial co-inoculation in asbestos bioremediation remain poorly understood. This study investigates the effect of microbial single cultures and co-cultures on modifying crocidolite and chrysotile fibers, focusing on the extraction of iron and magnesium. Seventy bacterial and eighty-three fungal strains were isolated from five diverse sites, characterized phylogenetically using the 16S rRNA and ITS regions, respectively, and assessed for siderophore and organic acid production. Most bacterial strains were identified as Pseudomonas, while Penicillium predominated among fungal strains. Ten bacterial and 25 fungal strains were found to produce both organic compounds. Four microbial co-cultures (one bacterium-bacterium, two fungus-bacterium, and one fungus-fungus) exhibiting synergistic effects in plate assays, alongside their respective single cultures, were incubated with crocidolite and chrysotile. ICP-OES analysis revealed that in crocidolite, the co-culture HRF19-HRB12 removed more iron than their single cultures, while Penicillium TPF36 showed the highest iron removal. The co-culture of two Pseudomonas strains (HRB12-RB5) exhibited the highest magnesium concentration in the supernatant. In chrysotile, the co-culture HRB12-RB5 removed more iron than their individual cultures, with Penicillium TFSF27 exhibiting the highest iron concentration in solution. Penicillium TFSF27 and the co-culture TFSF27-TPF36 demonstrated the highest magnesium removal. SEM-XRMA analysis showed a significant reduction in iron and magnesium content, confirming elemental extraction from the fibers\' structure. This study significantly broadens the range of microbial strains capable of modifying asbestos fibers and underscores the potential of microbial co-cultures in asbestos remediation.
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  • 文章类型: Journal Article
    在智利,鲑鱼双胞次体包含两个基因分离的基因组,LF-89和EM-90。然而,这两种变种的潜在共感染对大西洋鲑鱼(Salmosalar)中的沙门氏菌立克次体败血症(SRS)的影响仍未被研究.在我们的研究中,我们评估了沙门氏菌LF-89样和EM-90样共感染对腹膜内激发后大西洋鲑鱼的影响,以比较疾病动力学和宿主免疫反应的变化.共感染的鱼在攻击后21天(dpc)的存活率显着降低(24.1%),与EM-90样单次感染的鱼类相比(40.3%)。相比之下,所有LF-89样单次感染的鱼都存活了。此外,共感染的鱼比任何单一感染的鱼都表现出更高的临床病变。在头肾中评估鲑鱼免疫相关生物标志物的基因表达,脾,脾和肝脏显示EM-90样分离物和共感染诱导细胞因子的上调(例如,il-1β,如果γ,il8、il10)、抗菌肽(hepdicin)和模式识别受体(PRRs),例如TLR5s。此外,在EM-90样和共感染鱼类的血清样本中,观察到总IgM水平升高.有趣的是,针对沙门氏菌的特异性IgM在LF-89样感染的鱼血清中显示出更高的EM-90样抗原检测(交叉反应)。这些数据提供了证据,表明沙门氏菌LF-89样和EM-90样相互作用可以调节大西洋鲑鱼的SRS疾病动态,引起协同作用,增加疾病的严重程度和鱼类的死亡率。总的来说,这项研究有助于更好地了解沙门氏菌种群动态。
    In Chile, Piscirickettsia salmonis contains two genetically isolated genogroups, LF-89 and EM-90. However, the impact of a potential co-infection with these two variants on Salmonid Rickettsial Septicemia (SRS) in Atlantic salmon (Salmo salar) remains largely unexplored. In our study, we evaluated the effect of P. salmonis LF-89-like and EM-90-like co-infection on post-smolt Atlantic salmon after an intraperitoneal challenge to compare changes in disease dynamics and host immune response. Co-infected fish had a significantly lower survival rate (24.1%) at 21 days post-challenge (dpc), compared with EM-90-like single-infected fish (40.3%). In contrast, all the LF-89-like single-infected fish survived. In addition, co-infected fish presented a higher presence of clinical lesions than any of the single-infected fish. The gene expression of salmon immune-related biomarkers evaluated in the head kidney, spleen, and liver showed that the EM-90-like isolate and the co-infection induced the up-regulation of cytokines (e.g., il-1β, ifnγ, il8, il10), antimicrobial peptides (hepdicin) and pattern recognition receptors (PRRs), such as TLR5s. Furthermore, in serum samples from EM-90-like and co-infected fish, an increase in the total IgM level was observed. Interestingly, specific IgM against P. salmonis showed greater detection of EM-90-like antigens in LF-89-like infected fish serum (cross-reaction). These data provide evidence that P. salmonis LF-89-like and EM-90-like interactions can modulate SRS disease dynamics in Atlantic salmon, causing a synergistic effect that increases the severity of the disease and the mortality rate of the fish. Overall, this study contributes to achieving a better understanding of P. salmonis population dynamics.
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  • 文章类型: Journal Article
    卤化有机化合物是对人类健康和生态系统安全构成严重威胁的持久性污染物。钴酰胺是有机卤化物呼吸细菌(OHRB)中还原性脱卤酶(RDase)的必需辅因子,催化脱卤过程。本文系统地总结了cobamides对有机卤化物呼吸作用的影响。还讨论了钴胺在脱卤过程中的催化过程。此外,我们检查OHRB,不能合成cobamide,必须通过救助途径从环境中获得;与cobamide生产者的共培养更有益和可能。这篇综述旨在帮助读者更好地了解cobamides在还原脱卤中的重要性和功能。所提供的信息可以帮助制定生物修复策略。
    Halogenated organic compounds are persistent pollutants that pose a serious threat to human health and the safety of ecosystems. Cobamides are essential cofactors for reductive dehalogenases (RDase) in organohalide-respiring bacteria (OHRB), which catalyze the dehalogenation process. This review systematically summarizes the impact of cobamides on organohalide respiration. The catalytic processes of cobamide in dehalogenation processes are also discussed. Additionally, we examine OHRB, which cannot synthesize cobamide and must obtain it from the environment through a salvage pathway; the co-culture with cobamide producer is more beneficial and possible. This review aims to help readers better understand the importance and function of cobamides in reductive dehalogenation. The presented information can aid in the development of bioremediation strategies.
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  • 文章类型: Journal Article
    巨噬细胞,作为肿瘤组织中最大的免疫细胞群,在影响肿瘤细胞的各种恶性行为和肿瘤免疫逃避中起着至关重要的作用。随着巨噬细胞和癌症免疫治疗研究的发展,适当的研究模型的重要性变得越来越明显。类器官的发展弥合了传统二维(2D)培养和动物实验之间的差距。最近的研究表明,类器官表现出与来源组织相似的生理特征,并且与来源组织或器官的体内基因组和分子标记非常相似。然而,类器官仍然缺乏免疫成分。开发类器官和巨噬细胞的共培养模型对于研究肿瘤细胞和巨噬细胞之间的相互作用和机制至关重要。本文概述了合作文化模式的建立,类器官巨噬细胞相互作用的研究现状,以及免疫治疗的现状。此外,说明了该模型的应用前景和不足之处。最终,希望共培养模型将提供一个临床前测试平台,以最大限度地提高精确的癌症免疫治疗策略。
    Macrophages, as the largest immune cell group in tumour tissues, play a crucial role in influencing various malignant behaviours of tumour cells and tumour immune evasion. As the research on macrophages and cancer immunotherapy develops, the importance of appropriate research models becomes increasingly evident. The development of organoids has bridged the gap between traditional two-dimensional (2D) cultures and animal experiments. Recent studies have demonstrated that organoids exhibit similar physiological characteristics to the source tissue and closely resemble the in vivo genome and molecular markers of the source tissue or organ. However, organoids still lack an immune component. Developing a co-culture model of organoids and macrophages is crucial for studying the interaction and mechanisms between tumour cells and macrophages. This paper presents an overview of the establishment of co-culture models, the current research status of organoid macrophage interactions, and the current status of immunotherapy. In addition, the application prospects and shortcomings of the model are explained. Ultimately, it is hoped that the co-culture model will offer a preclinical testing platform for maximising a precise cancer immunotherapy strategy.
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  • 文章类型: Journal Article
    养殖肉,一种新兴的肉类生产技术,减少了环境负担,并提供了更健康,更可持续的肉类养殖方法。养殖肉类中的脂肪对增强质地至关重要,味道,和温柔。然而,目前的培养肉生产方法仅限于单细胞型。为了满足消费者对养殖肉制品的需求,开发生产同时含有肌肉和脂肪的养殖肉制品的新方法至关重要。在这项研究中,通过控制肌细胞和脂肪细胞的比例和培养条件来促进细胞的活力和分化。养殖肉的总消化率超过37%,高于牛肉(34.7%)。此外,纹理,外观,并且改善了共培养肉的味道。总的来说,这项研究对制备营养丰富且能消化的养殖肉类有很大的希望。
    Cultured meat, an emerging meat production technology, has reduced environmental burden as well as provide healthier and more sustainable method of meat culture. Fat in cultured meat is essential for enhancing texture, taste, and tenderness. However, current cultured meat production method is limited to single-cell type. To meet the consumer demands for cultured meat products, it is crucial to develop new methods for producing cultured meat products that contain both muscle and fat. In this study, cell viability and differentiation were promoted by controlling the ratio and cultivation conditions of myocytes and adipocytes. The total digestibility of cultured meat exceeded 37%, higher than that of beef (34.7%). Additionally, the texture, appearance, and taste of the co-cultured meat were improved. Collectively, this research has great promise for preparing rich-nutritious and digestion cultured meat.
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  • 文章类型: Journal Article
    PLA/PBAT-ST20的利用率不断提高,存在潜在的生态风险,这源于其随意处置和不完全降解。为了解决这个问题,这项研究调查了PLA/PBAT-ST20的降解能力,通过包含两种嗜热细菌的共培养系统,从堆肥的嗜热阶段选择并鉴定的假单胞菌G1和KocuriaG2。结构表征结果表明,菌株定植于PLA/PBAT-ST20的表面,造成孔和裂缝,随着羰基指数(CI)和多分散指数(PDI)的增加,表明氧化降解。酶活性结果表明,共培养系统显着增强了蛋白酶和脂肪酶的分泌和活性,促进酯键的分解。LC-QTOF-MS结果表明,降解后得到各种中间产物,最终参与TCA周期(ko00020),进一步完全矿化。此外,经过15天的堆肥,共培养系统对PBAT/PLA-ST20薄膜的降解率为72.14±2.1wt%,随着各种大小的塑料碎片的数量减少,证明PLA/PBAT-ST20薄膜的有效降解。这项研究强调了嗜热细菌通过生物降解解决塑料污染的潜力,并强调共培养系统可以作为修复PLA/PBAT塑料的理想解决方案。
    The rising utilization of PLA/PBAT-ST20 presents potential ecological risks stemming from its casual disposal and incomplete degradation. To solve this problem, this study investigated the degradation capabilities of PLA/PBAT-ST20 by a co-culture system comprising two thermophilic bacteria, Pseudomonas G1 and Kocuria G2, selected and identified from the thermophilic phase of compost. Structural characterization results revealed that the strains colonized the PLA/PBAT-ST20\'s surface, causing holes and cracks, with an increase in the carbonyl index (CI) and polydispersity index (PDI), indicating oxidative degradation. Enzyme activity results demonstrated that the co-culture system significantly enhanced the secretion and activity of proteases and lipases, promoting the breakdown of ester bonds. LC-QTOF-MS results showed that various intermediate products were obtained after degradation, ultimately participating in the TCA cycle (ko00020), further completely mineralized. Additionally, after 15-day compost, the co-culture system achieved a degradation rate of 72.14 ± 2.1 wt% for PBAT/PLA-ST20 films, with a decrease in the abundance of plastic fragments of all sizes, demonstrating efficient degradation of PLA/PBAT-ST20 films. This study highlights the potential of thermophilic bacteria to address plastic pollution through biodegradation and emphasizes that the co-culture system could serve as an ideal solution for the remediation of PLA/PBAT plastics.
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  • 文章类型: Journal Article
    诺卡氏菌属是革兰氏阳性菌,其中许多具有致病性并感染人类肺,皮肤,大脑,和其他器官。由于对诺卡氏菌属的研究没有链霉菌属的研究那么快,诺卡氏菌属被认为是探索天然产物的有用的未开发资源。另一方面,当诺卡氏菌属感染人体时,这些菌株受到巨噬细胞等免疫细胞的攻击。因此,我们提出了一种在动物细胞存在下培养诺卡氏菌属筛选天然产物的新方法。在这次审查中,我们描述了我们最近从诺卡氏菌属寻找天然产物的结果。
    The genus Nocardia are gram-positive bacteria, many of which possess pathogenicity and infect human lungs, skin, brain, and other organs. Since research on the genus Nocardia has not progressed as rapidly as that on the genus Streptomyces, the genus Nocardia is considered a useful undeveloped resource for exploring natural products. On the other hand, when the genus Nocardia infects the human body, the strains are attacked by immune cells such as macrophages. Therefore, we suggested a new method for screening natural products by culturing the genus Nocardia in the presence of animal cells. In this review, we describe our recent results in searching for natural products from the genus Nocardia.
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  • 文章类型: Journal Article
    目的:骨肉瘤是一种缺乏最佳临床治疗方案的原发性骨肿瘤。肿瘤微环境中的肿瘤相关巨噬细胞与肿瘤的发展和转移密切相关。研究已经确定具有胶原结构的巨噬细胞受体(MARCO)是在巨噬细胞中表达的特异性受体。本研究旨在研究抗MARCOmAb治疗是否可以诱导肿瘤微环境中的巨噬细胞极化并引起抗肿瘤作用。
    方法:THP-1细胞用20ng/mL佛波醇12-肉豆蔻酸酯13-乙酸酯和80ng/mL白介素-4处理48小时,以诱导巨噬细胞极化为交替活化的巨噬细胞(M2)。酶联免疫吸附测定,实时定量聚合酶链反应,流式细胞术,和生物信息学分析进行评估巨噬细胞极化。共培养组包括一个空白组,M2巨噬细胞和U2OS共培养组,和抗MARCOmAb处理的M2巨噬细胞组。细胞活力测定,细胞划痕测试,凋亡,进行细胞周期分析以确定抗MARCOmAb处理的巨噬细胞对骨肉瘤细胞的作用。
    结果:证明了抗MARCOmAb可以驱动巨噬细胞向经典激活的巨噬细胞(M1)极化。抗MARCO单克隆抗体促进巨噬细胞分泌促炎因子,包括肿瘤坏死因子-α(TNF-α),白细胞介素-1β,白细胞介素-6和白细胞介素-23.对体外共培养模型的研究表明,用抗MARCOmAb处理的巨噬细胞可以抑制骨肉瘤细胞的生长和迁移,诱导细胞凋亡,并通过巨噬细胞的M1极化抑制骨肉瘤细胞的细胞周期进程。
    结论:抗MARCOmAb治疗通过影响巨噬细胞向M1巨噬细胞的极化发挥抗骨肉瘤作用,为治疗骨肉瘤提供了一种潜在的新治疗方法。
    OBJECTIVE: Osteosarcoma is a primary bone tumor lacking optimal clinical treatment options. Tumor-associated macrophages in the tumor microenvironment are closely associated with tumor development and metastasis. Studies have identified the macrophage receptor with collagenous structure (MARCO) as a specific receptor expressed in macrophages. This study aimed to investigate whether anti-MARCO mAb treatment can induce macrophage polarization in the tumor microenvironment and elicit anti-tumor effects.
    METHODS: THP-1 cells were treated with 20 ng/mL phorbol 12-myristate 13-acetate and 80 ng/mL interleukin-4 for 48 h to induce macrophage polarization to alternatively activated macrophages (M2). Enzyme-linked immunosorbent assay, real-time quantitative polymerase chain reaction, flow cytometry, and bioinformatic analyses were performed to evaluate macrophage polarization. The co-culture groups included a blank group, an M2 macrophage and U2OS co-culture group, and an anti-MARCO mAb-treated M2 macrophage group. Cell viability assays, cell scratch tests, apoptosis, and cell cycle analyses were performed to determine the effects of anti-MARCO mAb-treated macrophages on osteosarcoma cells.
    RESULTS: It was demonstrated that anti-MARCO mAb can drive macrophages toward classically activated macrophage (M1) polarization. Anti-MARCO mAb promoted the secretion of pro-inflammatory factors by macrophages, including tumor necrosis factor-alpha (TNF-α), interleukin-1beta, interleukin-6 and interleukin-23. Studies on in vitro co-culture models have revealed that macrophages treated with anti-MARCO mAb can suppress the growth and migration of osteosarcoma cells, induce cell apoptosis, and inhibit cell cycle progression of osteosarcoma cells through M1 polarization of macrophages in vitro.
    CONCLUSIONS: Anti-MARCO mAb treatment exerts anti-osteosarcoma effects by affecting macrophage polarization toward M1 macrophages, offering a potential new therapeutic approach for treating osteosarcoma.
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  • 文章类型: Journal Article
    通过实施复苏促进因子(Rpfs)对活的但不可培养的(VBNC)细菌进行的调查扩大了分离能够降解多氯联苯(PCB)的菌株的潜在来源。尽管如此,关于复苏菌株的功效以及通过共培养可能改善其性能的研究有限。在这项工作中,复苏菌株的PCB降解潜力,特别是假单胞菌。HR1和无色杆菌属。HR2,以及它们的共同文化,被调查。特别重要的是最佳共培养物和单个菌株之间关于它们降解PCB同源物和矿化中间代谢物的能力的比较分析。结果表明,复苏菌株HR1和HR2表现出Aroclor1242的强劲生长和有效降解。与单个菌株相比,共培养物CO13的最佳HR1与HR2之比为1:3,在PCB降解和中间代谢物矿化方面表现出显着改善。功能基因和降解代谢产物的分析表明,单个菌株和共培养物CO13均通过HOPDA-苯甲酸盐途径降解多氯联苯,然后通过原儿茶酸的间位和邻位切割途径矿化,以及邻苯二酚的邻位切割途径。这项研究代表了通过复苏菌株的共培养改善PCB降解的第一份文件,这突出了这些复苏菌株及其共培养物作为增强生物修复的有效生物接种剂的巨大前景。
    The investigation into viable but non-culturable (VBNC) bacteria through the implementation of resuscitation promoting factors (Rpfs) has broadened the potential sources for isolating strains capable of degrading polychlorinated biphenyls (PCBs). Nonetheless, there has been limited research on the efficacy of resuscitated strains and the potential improvement of their performance through co-cultivation. In this work, the PCB degradation potential of resuscitated strains, specifically Pseudomonas sp. HR1 and Achromobacter sp. HR2, as well as their co-cultures, was investigated. Of particular importance was the comparative analysis between the optimal co-culture and individual strains regarding their ability to degrade PCB homologs and mineralize intermediate metabolites. The results suggested that the resuscitated strains HR1 and HR2 demonstrated robust growth and effective degradation of Aroclor 1242. The co-culture CO13, with an optimal HR1 to HR2 ratio of 1:3, exhibited a remarkable improvement in PCB degradation and intermediate metabolite mineralization compared to individual strains. Analysis of functional genes and degradation metabolites revealed that both the individual strains and co-culture CO13 degraded PCBs via the HOPDA-benzoate pathway, then mineralized through protocatechuate meta- and ortho-cleavage pathways, as well as the catechol ortho-cleavage pathway. This study represents the first documentation of the improved PCB degradation through the co-cultivation of resuscitated strains, which highlights the great promise of these resuscitated strains and their co-cultures as effective bio-inoculants for enhanced bioremediation.
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  • 文章类型: Journal Article
    涉及含霉菌酸的细菌(MACB)的组合培养物可以刺激放线菌中次级代谢产物(SM)的产生。在之前的调查中,我们筛选了具有减少的SMs产生的天黑链霉菌JCM4020突变体,特别是十一酸prodigiosin(红色),通过引入MACBTsukamurellapulmonisTP-B0596得到了增强。在这项研究中,我们进行了突变分析,确定了sco1842基因,我们将其指定为基因名称ccr1(联合培养相关调节蛋白编号。1),作为在天色链球菌A3中各种主要SM的生产中观察到的缺陷表型的关键因素(2)。值得注意的是,发现Ccr1(SCO1842)同源物在整个链霉菌基因组中高度保守。虽然Ccr1缺乏保守的基序,深入检查显示,在其某些同源物中,N端区域存在螺旋转角螺旋(HTH)基序,而C端区域存在解旋酶C端结构域(HCTD)基序。Ccr1被预测为一种类核苷相关蛋白(NAP),其对基因转录的影响通过RNA-seq分析得到验证,该分析揭示了全基因组变异。此外,RT-qPCR表明ccr1在与肺虫联合培养中被转录激活,这表明Ccr1参与了对细菌相互作用的反应。然后,我们在联合培养中调查了黑链霉菌HEK616,ccr1同系物的敲除突变体显示出减少的链菌属和5aTHQs的产量。这一发现表明,链霉菌属物种中的Ccr1同源物与SM生产有关。我们的研究阐明了一个新的NAP样蛋白家族的存在,该家族在链霉菌物种中进化并在SM生产中发挥关键作用。
    Combined-cultures involving mycolic acid-containing bacteria (MACB) can stimulate secondary metabolite (SM) production in actinomycetes. In a prior investigation, we screened Streptomyces coelicolor JCM4020 mutants with diminished production of SMs, specifically undecylprodigiosin (RED), which was enhanced by introducing the MACB Tsukamurella pulmonis TP-B0596. In this study, we conducted mutational analysis that pinpointed the sco1842 gene, which we assigned the gene name ccr1 (combined-culture related regulatory protein no. 1), as a crucial factor in the deficient phenotype observed in the production of various major SMs in S. coelicolor A3(2). Notably, the Ccr1 (SCO1842) homolog was found to be highly conserved throughout the Streptomyces genome. Although Ccr1 lacked conserved motifs, in-depth examination revealed the presence of a helix-turn-helix (HTH) motif in the N-terminal region and a helicase C-terminal domain (HCTD) motif in the C-terminal region in some of its homologs. Ccr1 was predicted to be a nucleoid-associated protein (NAP), and its impact on gene transcription was validated by RNA-seq analysis that revealed genome-wide variations. Furthermore, RT-qPCR demonstrated that ccr1 was transcriptionally activated in combined-culture with T. pulmonis, which indicated that Ccr1 is involved in the response to bacterial interaction. We then investigated Streptomyces nigrescens HEK616 in combined-culture, and the knockout mutant of the ccr1 homolog displayed reduced production of streptoaminals and 5aTHQs. This finding reveals that the Ccr1 homolog in Streptomyces species is associated with SM production. Our study elucidates the existence of a new family of NAP-like proteins that evolved in Streptomyces species and play a pivotal role in SM production.
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