bacterial species

细菌种类
  • 文章类型: Journal Article
    唾液微生物群的多样性和组成的变化与体重状况有关,但是调查结果并不一致。专注于临床相关的条件,如中心性肥胖和使用先进的测序技术可能会填补知识的空白。
    我们采用浅层宏基因组测序法研究了有(n=14)和无(n=36)中心性肥胖儿童的唾液微生物群。此外,我们研究了习惯性食物消费对微生物酶谱的作用。
    数据包括50名儿童(50%为男性),平均年龄为14.2(SD0.3)岁,从芬兰青少年健康(Fin-HIT)队列中选择。甜食(STI)消费频率的饮食评分,乳制品(DCI)和植物(PCI)是基于自编食物频率问卷得出的.中心性肥胖是根据腰高比使用临界值0.5定义的。唾液样本进行了全基因组鸟枪测序,利用METAnnotatorX2生物信息学平台实现了分类学和功能分析。
    组的腰围平均相差20(95%CI14-27)cm。我们确定了假单胞菌的缺乏,oulorum和oris作为与中心性肥胖相关的推定生物标志物,观察到两组之间共有16种酶促反应不同。DCI与最高数量的酶谱(122)相关,其次是STI(60)和DCI(25)(皮尔逊相关p<0.05)。有趣的是,STI显示出高的正/负相关比(5.09),而DCI和PCI显示低比率(分别为0.54和0.33)。因此,酶促反应的主要驱动因素是STI,以及相关途径涉及副流感嗜血杆菌和Veilonella等诱导的硝酸盐代谢。
    中心性肥胖的临床相关差异仅适度反映在唾液微生物群的组成上。习惯食用甜食是有和没有中心性肥胖的儿童唾液微生物区系的酶促反应的重要决定因素。这些发现的临床相关性值得进一步研究。
    UNASSIGNED: Variation in diversity and composition of saliva microbiota has been linked to weight status, but findings have been inconsistent. Focusing on clinically relevant conditions such as central obesity and using advanced sequencing techniques might fill in the gaps of knowledge.
    UNASSIGNED: We investigated saliva microbiota with shallow metagenome sequencing in children with (n = 14) and without (n = 36) central obesity. Additionally, we examined the role of habitual food consumption on microbial enzymatic repertoire.
    UNASSIGNED: Data comprised 50 children (50% male) with a mean age of 14.2 (SD 0.3) years, selected from the Finnish Health in Teens (Fin-HIT) cohort. Dietary scores for consumption frequency of sweet treats (STI), dairy products (DCI) and plants (PCI) were derived based on a self-administered food frequency questionnaire. Central obesity was defined based on waist-height ratio using the cut-off 0.5. Saliva samples were subjected to whole-metagenome shotgun sequencing, and taxonomic and functional profiling was achieved with METAnnotatorX2 bioinformatics platform.
    UNASSIGNED: Groups had an average 20 (95% CI 14-27) cm difference in waist circumference. We identified the lack of Pseudomonas guguagenesis and Prevotella scopos, oulorum and oris as putative biomarkers associated with central obesity and observed a total of 16 enzymatic reactions differing between the groups. DCI was associated with the highest number of enzyme profiles (122), followed by STI (60) and DCI (25) (Pearson correlation p < 0.05). Intriguingly, STI showed a high positive/negative correlation ratio (5.09), while DCI and PCI showed low ratios (0.54 and 0.33, respectively). Thus, the main driver of enzymatic reactions was STI, and the related pathways involved nitrate metabolism induced by Haemophilus parainfluenzae and Veilonella dispar among others.
    UNASSIGNED: Clinically relevant differences in central obesity were only modestly reflected in the composition of saliva microbiota. Habitual consumption of sweet treats was a strong determinant of enzymatic reactions of saliva microbiota in children with and without central obesity. The clinical relevance of these findings warrants further studies.
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  • 文章类型: Journal Article
    未经证实:感染性心内膜炎(IE)是一种罕见的疾病,具有很高的发病率和死亡率,通常从口腔细菌物种进入循环发展。
    UNASSIGNED:我们比较了三组的口腔微生物组概况:IE患者(N9名患者;n=27个样本),有IE风险的疾病控制(N=28;n=84),和健康对照(N=37;n=111)。确定了IE患者血液培养物中的细菌种类,以与匹配的口腔样本进行比较。
    未经证实:口腔微生物组谱是从口腔粘膜获得的,唾液,所有三组以及IE组(N=9;n=16)和疾病对照(N=28;n=54)的牙龈下和牙龈上菌斑样本。根据相对丰度数据确定α和β多样性。区分物种由LEfSe鉴定,事后Mann-Whitney,和ROC分析。通过16S-rRNA基因Sanger测序确认了IE患者血液培养物中细菌的种类。
    UnASSIGNED:组之间的Alpha和beta多样性不同。确定了与IE相关的歧视性物种,例如副流感嗜血杆菌和血链球菌。两个血液分离物是金黄色葡萄球菌,也在一个匹配的唾液样本中鉴定。变形链球菌存在于一名患者的斑块样本和血培养物中。
    未经批准:IE的口腔微生物组,非IE疾病控制,和健康控制显著不同。有必要更好地理解IE相关的细菌-宿主相互作用。
    UNASSIGNED: Infective endocarditis (IE) is an uncommon disease with high morbidity and mortality rates, which often develops from oral bacterial species entering circulation.
    UNASSIGNED: We compared oral microbiome profiles of three groups: IE patients (N  9 patients; n = 27 samples), disease controls at risk for IE (N = 28; n = 84), and healthy controls (N = 37; n = 111). Bacterial species in IE patients\' blood cultures were identified for comparison with matched oral samples.
    UNASSIGNED: Oral microbiome profiles were obtained from buccal mucosa, saliva, and tongue samples for all three groups and from sub- and supra-gingival plaque samples of the IE group (N = 9; n = 16) and disease controls (N = 28; n = 54). Alpha- and beta-diversities were determined based on relative abundance data. Discriminative species were identified by LEfSe, post hoc Mann-Whitney, and ROC analyses. Identity of the bacterial species in IE patients\' blood cultures was confirmed by 16S-rRNA gene Sanger sequencing.
    UNASSIGNED: Alpha- and beta-diversities differed between groups. Discriminative IE-associated species were identified, e.g. Haemophilus parainfluenzae and Streptococcus sanguinis. Two blood isolates were Staphylococcus aureus, also identified in one matched saliva sample. Streptococcus mutans was present in one patient\'s plaque samples and blood culture.
    UNASSIGNED: Oral microbiomes of IE, non-IE disease controls, and healthy controls differed significantly. A better understanding of IE-related bacterial-host interactions is warranted.
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  • 文章类型: Case Reports
    目的本研究的目的是评估早产的风险(PTB,<37周)和早期(37和38周)出生的妇女在急诊室(ED)就诊或住院的尿路感染(UTI)妊娠三个月。方法从2011年至2017年加利福尼亚州出生的新生儿中选取主要样本。从ED或出院记录中确定尿路感染。PTB的风险,按子类型,使用对数线性回归,通过妊娠3个月和访视类型对早产进行评估.根据母亲因素调整了风险比。在爱荷华州的私人保险妇女中检查了抗生素的使用情况。结果怀孕期间患有UTI的妇女出生<32周的风险较高,32至36周,和37至38周(调整后的风险比[aRs]1.1-1.4)。在具有多种细菌种类诊断代码的女性中,28.8%有PTB。无论使用何种抗生素治疗,UTI诊断都会升高PTB的风险(治疗后的RR1.4,未经处理的RR1.5)。结论UTI与早产有关。无论怀孕的三个月,这种联系都存在,PTB的类型,和抗生素治疗。
    Objective  The aim of the study is to evaluate the risk of preterm birth (PTB, <37 weeks) and early term (37 and 38 weeks) birth among women with an emergency department (ED) visit or hospitalization with a urinary tract infection (UTI) by trimester of pregnancy. Methods  The primary sample was selected from births in California between 2011 and 2017. UTIs were identified from the ED or hospital discharge records. Risk of PTB, by subtype, and early term birth were evaluated by trimester of pregnancy and by type of visit using log-linear regression. Risk ratios were adjusted for maternal factors. Antibiotic usage was examined in a population of privately insured women from Iowa. Results  Women with a UTI during pregnancy were at elevated risk of a birth <32 weeks, 32 to 36 weeks, and 37 to 38 weeks (adjusted risk ratios [aRRs] 1.1-1.4). Of the women with a diagnostic code for multiple bacterial species, 28.8% had a PTB. A UTI diagnosis elevated risk of PTB regardless of antibiotic treatment (aRR 1.4 for treated, aRR 1.5 for untreated). Conclusion  UTIs are associated with early birth. This association is present regardless of the trimester of pregnancy, type of PTB, and antibiotic treatment.
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