Wastewater-Based Epidemiological Monitoring

基于废水的流行病学监测
  • 文章类型: Journal Article
    在欧洲,基于废水的监测(WBS)已成为监测SARS-CoV-2和其他人类病原体传播的广泛方法。我们进行了一项关于WBS系统目标的调查,方法,2023年10个受邀欧洲国家的代表性和实用性,即奥地利,比利时,丹麦,芬兰,希腊,匈牙利,意大利,卢森堡,荷兰和挪威。所有国家都完成了关于其SARS-CoV-2WBS系统的研究问卷,并分享了其他被认为相关的病原体的WBS信息。SARS-CoV-2WBS系统主要监测国家和国家以下趋势(人口覆盖率:25-99%),大多数(8/10)也跟踪变体分布。10个国家中有9个报告说,其SARS-CoV-2WBS系统代表了其人口,所有国家都指出,这些发现对公共卫生决策很有价值。结果与相关公共卫生当局共享,并通过专用网站和/或仪表板发布。其他病原体的WBS系统大多处于早期阶段,一些国家正在实施试点。值得注意的例外是芬兰完善的脊髓灰质炎病毒监测系统,意大利和荷兰。这项研究使人们了解WBS在欧洲的多样化景观,为未来的发展和合作提供见解。此外,它强调了将WBS进一步纳入其他欧洲监测系统的必要性。
    Wastewater-based surveillance (WBS) has become a widespread method to monitor transmission of SARS-CoV-2 and other human pathogens in Europe. We conducted a survey about WBS systems\' objectives, approaches, representativeness and usefulness in 10 invited European countries in 2023, i.e. Austria, Belgium, Denmark, Finland, Greece, Hungary, Italy, Luxembourg, the Netherlands and Norway. All countries completed the study questionnaire about their SARS-CoV-2 WBS systems, and shared information about WBS of other pathogens as deemed relevant. SARS-CoV-2 WBS systems primarily monitored national and subnational trends (population coverage: 25-99%), and a majority (8/10) also tracked variant distribution. Nine of 10 countries reported that their SARS-CoV-2 WBS systems were representative of their population and all countries remarked that the findings were valuable for public health decision-making. Results were shared with relevant public health authorities and published via dedicated websites and/or dashboards. WBS systems of other pathogens were mostly in the early stages, with some countries implementing pilots. Notable exceptions were the well-established poliovirus surveillance systems in Finland, Italy and the Netherlands. This study brings understanding the diverse landscape of WBS in Europe, offering insights for future developments and collaborations. Furthermore, it highlights the need for further integration of WBS into other European surveillance systems.
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  • 文章类型: Journal Article
    基于废水的流行病学(WBE)是一种通过分析污水来监测社区健康的环境方法。COVID-19大流行促使科学家和公共卫生专业人员重新审视WBE,将其作为优化资源分配以减轻疾病传播和预防暴发的工具。一些研究强调了与公共卫生专业人员协调的WBE计划的价值;然而,实施所需的细节没有很好地描述。为了应对这种知识差距,本文记录了亚利桑那州成功的WBE计划的框架,战术流行病学反应系统(WATERS)的废水分析,详细说明了建立公共卫生准备和应对行动的通信结构和方法。此通信说明了如何采用程序操作来降低爆发严重性。此处概述的结构是可定制的,可以指导其他程序将WBE作为公共卫生工具实施。
    Wastewater-based epidemiology (WBE) is an environmental approach to monitor community health through the analysis of sewage. The COVID-19 pandemic catalyzed scientists and public health professionals to revisit WBE as a tool to optimize resource allocation to mitigate disease spread and prevent outbreaks. Some studies have highlighted the value of WBE programs that coordinate with public health professionals; however, the details necessary for implementation are not well-characterized. To respond to this knowledge gap, this article documents the framework of a successful WBE program in Arizona, titled Wastewater Analysis for Tactical Epidemiological Response Systems (WATERS), detailing the developed structure and methods of communication that enabled public health preparedness and response actions. This communication illustrates how program operations were employed to reduce outbreak severity. The structure outlined here is customizable and may guide other programs in the implementation of WBE as a public health tool.
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  • 文章类型: Journal Article
    基于废水的流行病学(WBE)已成为监测COVID-19传播的有前途的工具,因为SARS-CoV-2可以在感染者的粪便中排出,即使没有症状。本研究旨在优化基于废水中SARS-CoV-2RNA浓度估算COVID-19感染率的预测模型。并揭示了深圳的感染趋势和变异多样化,中国取消了严格的COVID-19战略。分析了在指定医院住院的1204例SARS-CoV-2感染者的粪便样本(n=4337),以获得Omicron变体特异性粪便脱落动力学。来自6个污水处理厂(WWTP)和9个泵站的废水样本,覆盖355万人,监测SARS-CoV-2RNA浓度和变体丰度。我们发现,这两个地区的废水中的病毒载量在2022年12月迅速增加,2022年12月下旬,COVID-19感染出现高峰,主要由Omicron亚变体BA.5.2.48和BF.7.14引起。预测模型,基于废水中总病毒载量和个体粪便病毒脱落之间的质量平衡,在严格的COVID-19策略解除后的三周内,累积感染率从<0.1%激增至70%以上。此外,在废水中鉴定出39种隐蔽的SARS-CoV-2变体,除了通过临床监测发现的那些。这些研究结果表明,WBE可以有效地对COVID-19感染率进行全面有效的评估,并识别隐匿性变异,强调其监测粪便脱落的新兴病原体的潜力。
    Wastewater-based epidemiology (WBE) has emerged as a promising tool for monitoring the spread of COVID-19, as SARS-CoV-2 can be shed in the faeces of infected individuals, even in the absence of symptoms. This study aimed to optimize a prediction model for estimating COVID-19 infection rates based on SARS-CoV-2 RNA concentrations in wastewater, and reveal the infection trends and variant diversification in Shenzhen, China following the lifting of a strict COVID-19 strategy. Faecal samples (n = 4337) from 1204 SARS-CoV-2 infected individuals hospitalized in a designated hospital were analysed to obtain Omicron variant-specific faecal shedding dynamics. Wastewater samples from 6 wastewater treatment plants (WWTPs) and 9 pump stations, covering 3.55 million people, were monitored for SARS-CoV-2 RNA concentrations and variant abundance. We found that the viral load in wastewater increased rapidly in December 2022 in the two districts, demonstrating a sharp peak in COVID-19 infections in late-December 2022, mainly caused by Omicron subvariants BA.5.2.48 and BF.7.14. The prediction model, based on the mass balance between total viral load in wastewater and individual faecal viral shedding, revealed a surge in the cumulative infection rate from <0.1 % to over 70 % within three weeks after the strict COVID-19 strategy was lifted. Additionally, 39 cryptic SARS-CoV-2 variants were identified in wastewater, in addition to those detected through clinical surveillance. These findings demonstrate the effectiveness of WBE in providing comprehensive and efficient assessments of COVID-19 infection rates and identifying cryptic variants, highlighting its potential for monitoring emerging pathogens with faecal shedding.
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  • 文章类型: Journal Article
    背景:废水中SARS-CoV-2测量的日常变化可能会挑战公共卫生解释。我们评估了以前用于COVID-19病例监测和短期预测的贝叶斯平滑和预测方法,住院治疗,和死亡。
    方法:来自渥太华下水道的SARS-CoV-2病毒测量,加拿大,2020年7月1日至2022年2月15日在市政污水处理厂采样,用于评估和内部验证测量平均和预测。使用来自安大略省15个污水处理厂和市政当局的流入废水样品的病毒测量数据进行外部验证。
    结果:使用贝叶斯平滑的SARS-CoV-2病毒随时间的测量图直观地代表了在初始(渥太华)和15个安大略省社区的外部验证中由病例和住院数据描述的不同的COVID-19“波”。废水样品中病毒测量的随时间变化的生长速率近似于病例和住院观察到的生长速率。从2020年12月23日至2022年8月8日的整个评估期间,一周的预测病毒测量值接近观察到的病毒测量值。未校准的模型在病毒测量(正生长)的快速增加期间显示预测不足,在快速减少期间显示预测过度。重新校准后,该模型显示了观察到的和预测的估计值之间的近似。
    结论:对SARS-CoV-2的废水监测数据进行贝叶斯平滑,可以准确估计COVID-19的增长率,并对SARS-CoV-2的废水进行一周和两周的预测。安大略省的16个城市,加拿大。代表不同下水道和环境条件的其他社区需要进一步评估。
    BACKGROUND: Day-to-day variation in the measurement of SARS-CoV-2 in wastewater can challenge public health interpretation. We assessed a Bayesian smoothing and forecasting method previously used for surveillance and short-term projection of COVID-19 cases, hospitalizations, and deaths.
    METHODS: SARS-CoV-2 viral measurement from the sewershed in Ottawa, Canada, sampled at the municipal wastewater treatment plant from July 1, 2020, to February 15, 2022, was used to assess and internally validate measurement averaging and prediction. External validation was performed using viral measurement data from influent wastewater samples from 15 wastewater treatment plants and municipalities across Ontario.
    RESULTS: Plots of SARS-CoV-2 viral measurement over time using Bayesian smoothing visually represented distinct COVID-19 \"waves\" described by case and hospitalization data in both initial (Ottawa) and external validation in 15 Ontario communities. The time-varying growth rate of viral measurement in wastewater samples approximated the growth rate observed for cases and hospitalization. One-week predicted viral measurement approximated the observed viral measurement throughout the assessment period from December 23, 2020, to August 8, 2022. An uncalibrated model showed underprediction during rapid increases in viral measurement (positive growth) and overprediction during rapid decreases. After recalibration, the model showed a close approximation between observed and predicted estimates.
    CONCLUSIONS: Bayesian smoothing of wastewater surveillance data of SARS-CoV-2 allows for accurate estimates of COVID-19 growth rates and one- and two-week forecasting of SARS-CoV-2 in wastewater for 16 municipalities in Ontario, Canada. Further assessment is warranted in other communities representing different sewersheds and environmental conditions.
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  • 文章类型: Journal Article
    在COVID-19大流行应对期间提出的举措取得成功的基础上,美国卫生官员正在扩大废水监测计划,以追踪其他具有公共卫生利益的目标病原体和疾病。休斯顿卫生部,德州,美国,进行了一项假设生成研究,传染病主题专家建议了潜在的目标。这项研究涉及美国国家科学院推荐的两个标准,Engineering,和用于选择废水目标的药物。结果可用作未来基于人群的研究的问卷的基础,以推荐最优先考虑的目标,以包括扩大的废水采样。
    Building on the success of initiatives put forth during the COVID-19 pandemic response, US health officials are expanding wastewater surveillance programs to track other target pathogens and diseases of public health interest. The Houston Health Department in Houston, Texas, USA, conducted a hypothesis-generating study whereby infectious disease subject matter experts suggested potential targets. This study addressed 2 criteria recommended by the National Academies of Sciences, Engineering, and Medicine for selecting wastewater targets. Results can be used as a basis of a questionnaire for a future population-based study to recommend targets of highest priority to include for expanded wastewater sampling.
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  • 文章类型: Journal Article
    非法毒品已成为一个至关重要的全球社会问题,随着韩国罪犯和毒品走私的数量不断增加。这项研究利用废水流行病学调查了韩国COVID-19大流行(2020-2022年)期间8种非法药物及其7种代谢物的消费模式。在废水进水中检测到10种化合物。甲基苯丙胺(METH)在样本中很普遍,其次是安非他明和摇头丸(MDMA)。有趣的是,MDMA和氯胺酮(KET),在COVID-19大流行前的韩国研究中没有检测到这一点,在这项研究中被检测到。METH表现出最高的消耗率,在2020年至2022年期间,MDMA从16.6mg/天/1000人下降到12.4mg/天/1000人,而MDMA在三年中增加(2020年,2021年和2022年分别为1.16、1.24和1.62mg/天/1000人)(p<0.05)。区域收入水平与METH消费率之间存在显著相关性(p<0.01),MDMA(p<0.01),和KET(p<0.05)。此外,城市中METH和MDMA的消费率与这些城市中被捕的毒品罪犯和当地俱乐部的数量呈正相关。这项研究的结果为制定与非法药物相关的监管政策和未来研究提供了有价值的见解。
    Illicit drugs have become a crucial global social issue, with South Korea experiencing a continuous increase in the number of offenders and drug smuggling. This study employed wastewater-based epidemiology to investigate consumption patterns of 8 illicit drugs and their 7 metabolites during the COVID-19 pandemic (2020-2022) in South Korea. Ten compouds were detected in the wastewater influent. Methamphetamine (METH) was prevalent in samples, followed by amphetamine and ecstasy (MDMA). Interestingly, MDMA and ketamine (KET), which were not detected in previous Korean studies conducted before COVID-19 pandemic, were detected in this study. METH exhibited the highest consumption rates, decreasing from 16.6 to 12.4 mg/day/1000 people between 2020 and 2022, while MDMA increased over the three years (mean: 1.16, 1.24, and 1.62 mg/day/1000 people in 2020, 2021, and 2022, respectively) (p < 0.05). Significant correlations were identified between regional income levels and the consumption rates of METH (p < 0.01), MDMA (p < 0.01), and KET (p < 0.05). Furthermore, METH and MDMA consumption rates in cities were positively correlated with the number of drug offenders arrested and local clubs in those cities. The findings of this study provide valuable insights into shaping regulatory policies related to illicit drugs and future studies.
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  • 文章类型: Journal Article
    背景:基于废水的流行病学(WBE)监测已被提议作为社区SARS-CoV-2传播的早期预警系统(EWS)。然而,来自低收入和中等收入国家(LMICs)的数据有限。本研究旨在评估WBE监测在印度尼西亚正式和非正式环境中使用不同的样本收集方法检测SARS-CoV-2的能力。将WBE数据与相关社区的COVID-19临床病例模式进行比较,并评估WBE用作社区内SARS-CoV-2暴发的EWS的潜力。
    方法:我们在日惹省的三个地区进行了WBE监测,印度尼西亚,超过11个月(2021年7月27日至2022年1月7日[Deltawave];2022年1月18日至6月3日[Omicronwave])。水样使用抓样,和/或被动取样方法和土壤样品每周或每两周收集一次。从处理过的水样品和直接从土壤中的膜滤器中提取RNA。进行逆转录定量实时聚合酶链反应(RT-qPCR)以检测SARS-CoV-2N和ORF1ab基因。
    结果:共收集了1,582个样本。废水中SARS-CoV-2的检出率反映了社区病例的发生率,在峰值时为85%,在Delta波结束时为2%,在O微米波期间为94%至11%。在废水中检测到SARS-CoV-2与相应社区的病例增加之间存在2周的滞后时间。
    结论:印度尼西亚的SARS-CoV-2WBE监测在监测COVID-19病例模式方面是有效的,并可作为预警系统,预测社区COVID-19病例发病率增加。
    BACKGROUND: Wastewater-based epidemiology (WBE) surveillance has been proposed as an early warning system (EWS) for community SARS-CoV-2 transmission. However, there is limited data from low-and middle-income countries (LMICs). This study aimed to assess the ability of WBE surveillance to detect SARS-CoV-2 in formal and informal environments in Indonesia using different methods of sample collection, to compare WBE data with patterns of clinical cases of COVID-19 within the relevant communities, and to assess the WBE potential to be used as an EWS for SARS-CoV-2 outbreaks within a community.
    METHODS: We conducted WBE surveillance in three districts in Yogyakarta province, Indonesia, over eleven months (27 July 2021 to 7 January 2022 [Delta wave]; 18 January to 3 June 2022 [Omicron wave]). Water samples using grab, and/or passive sampling methods and soil samples were collected either weekly or fortnightly. RNA was extracted from membrane filters from processed water samples and directly from soil. Reverse-transcription quantitative real-time polymerase chain reaction (RT-qPCR) was performed to detect the SARS-CoV-2 N and ORF1ab genes.
    RESULTS: A total of 1,582 samples were collected. Detection rates of SARS-CoV-2 in wastewater reflected the incidence of community cases, with rates of 85% at the peak to 2% at the end of the Delta wave and from 94% to 11% during the Omicron wave. A 2-week lag time was observed between the detection of SARS-CoV-2 in wastewater and increasing cases in the corresponding community.
    CONCLUSIONS: WBE surveillance for SARS-CoV-2 in Indonesia was effective in monitoring patterns of cases of COVID-19 and served as an early warning system, predicting the increasing incidence of COVID-19 cases in the community.
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  • 文章类型: Journal Article
    目的:本研究旨在评估使用交叉组装噬菌体(crAssphage)作为内源性对照,采用多变量归一化分析及其作为SARS-CoV-2数据归一化剂的应用。
    结果:在1年的监测期内,从八个污水处理厂(WWTP)获得了总共188个12小时复合原污水样品。采用N1和N2目标区域,在94%(177)和90%(170)的样本中检测到SARS-CoV-2RNA,分别,全球中位数为每升5log10基因组拷贝(GCl-1)。在100%的样品中检测到CrAssphage,范围为8.29至10.43log10GCl-1,中位数为9.46±0.40log10GCl-1,呈现时空变化。
    结论:尽管使用crAssphage的SARS-CoV-2数据标准化显示与研究期间发生的临床病例相关,通过每个污水处理厂每天的人均流量进行的crassphage归一化增加了这种相关性,证实了在疾病趋势监测中标准化废水监测(WWS)数据的重要性。
    OBJECTIVE: This study aimed to assess the use of cross-assembled phage (crAssphage) as an endogenous control employing a multivariate normalization analysis and its application as a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) data normalizer.
    RESULTS: A total of 188 twelve-hour composite raw sewage samples were obtained from eight wastewater treatment plants (WWTP) during a 1-year monitoring period. Employing the N1 and N2 target regions, SARS-CoV-2 RNA was detected in 94% (177) and 90% (170) of the samples, respectively, with a global median of 5 log10 genomic copies per liter (GC l-1). CrAssphage was detected in 100% of the samples, ranging from 8.29 to 10.43 log10 GC l-1, with a median of 9.46 ± 0.40 log10 GC l-1, presenting both spatial and temporal variabilities.
    CONCLUSIONS: Although SARS-CoV-2 data normalization employing crAssphage revealed a correlation with clinical cases occurring during the study period, crAssphage normalization by the flow per capita per day of each WWTP increased this correlation, corroborating the importance of normalizing wastewater surveillance data in disease trend monitoring.
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  • 文章类型: Journal Article
    基于废水的流行病学(WBE)是一种有价值的疾病监测工具。然而,对运输等因素知之甚少,storage,和废水特性影响定量方法的准确性。因此,本研究使用液滴数字PCR研究了废水的储存温度和理化特性对SARS-CoV-2和甲型流感稳定性的影响。此外,探讨了增强病毒恢复的策略。评估储存在±25至-80°C之间的市政进水废水84天的时间以确定病毒降解。在所有样品中观察到高达94.1%的甲型流感和SARS-CoV-2的降解,在±25°C最高。病毒降解与废水理化特性的变化相关。在加标颗粒中观察到的SARS-CoV-2的低降解表明病毒对废水固体的粘附,这与pH值的变化有关。超声频率范围从4到16kHz,上清液中SARS-CoV-2的浓度增加了3.30%至35.65%,表明病毒RNA附着于废水固体。这些结果突出了额外的预处理方法对于从废水样品中最大化RNA回收的重要性。基于这些发现,推断废水保存研究是必不可少的,预处理应包括在WBE方法中。
    Wastewater-based epidemiology (WBE) is a valuable disease surveillance tool. However, little is known on how factors such as transportation, storage, and wastewater characteristics influence the accuracy of the quantification methods. Hence, this study investigated the impact of storage temperatures and physicochemical characteristics of wastewater on SARS-CoV-2 and influenza A stability using droplet digital PCR. Additionally, strategies to enhance viral recovery were explored. Municipal influent wastewater stored between ±25 and -80 °C was assessed for a period of 84 days to determine viral degradation. Degradation up to 94.1% of influenza A and SARS-CoV-2 was observed in all samples with the highest at ±25 °C. Viral degradation was correlated to the changes in wastewater physicochemical characteristics. The low degradation observed of SARS-CoV-2 in the spiked pellets were indicative of viral adhesion to wastewater solids, which correlated with changes in pH. Ultrasonication frequencies ranging from 4 to 16 kHz, increased SARS-CoV-2 concentrations in the supernatant between 3.30 and 35.65%, indicating viral RNA attachment to wastewater solids. These results highlight the importance of additional pretreatment methods for maximizing RNA recovery from wastewater samples. Based on these findings, it was deduced that wastewater preservation studies are essential, and pretreatment should be included in the WBE methodology.
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  • 文章类型: Journal Article
    在COVID-19大流行期间,澳大利亚最大的城市之一,墨尔本,在2020年(160天)和2021年(111天)经历了三个主要的隔离期(“封锁”),这使其成为全球封锁最严重的城市之一。这项研究评估了大流行如何影响甲基苯丙胺的时间趋势,使用废水流行病学的MDMA和可卡因消费。在2020年和2021年的大部分时间(n=660天)收集了每日样本。使用直接注射LC-MS/MS测量浓度并反向计算消耗估计值。结果表明,甲基苯丙胺的使用在第一次封锁之前有所增加,在2020年第一次封锁结束后有所下降。甲基苯丙胺的趋势似乎在整个第二个封锁期间保持稳定,然后在结束后急剧增加。在2020年的大部分时间里,可卡因的使用保持稳定,在第二次封锁后增加。在第一次封锁开始后,MDMA的使用量有所下降,在2020年和2021年的大部分时间里保持稳定。与2020年相比,2021年的趋势变化较小,兴奋剂的使用似乎与COVID-19限制无关。总的来说,这项研究能够显示禁闭期和相关的社会限制对非法兴奋剂使用的影响.环境含义:非法药物是危险化学品,对人类和环境都有关注。虽然已经进行了研究以了解它们的时间趋势,这项工作利用基于废水的流行病学和每日采样来全面了解COVID-19大流行对甲基苯丙胺使用的影响,摇头丸和可卡因在世界上最封闭的城市之一。了解这种对非法药物使用的重大干预措施的后果可以为其潜在的环境影响提供宝贵的见解。
    During the COVID-19 pandemic, one of Australia\'s biggest cities, Melbourne, experienced three major isolation (\"lockdown\") periods in 2020 (160 days) and in 2021 (111 days) which makes it one of the most locked down cities world-wide. This study assessed how the pandemic affected temporal trends in methamphetamine, MDMA and cocaine consumption using wastewater-based epidemiology. Daily samples were collected for most of 2020 and 2021 (n = 660 days). Concentrations were measured using direct-injection LC-MS/MS and back-calculated to consumption estimates. Results indicate that methamphetamine use was increasing before the first lockdown and decreased after the end of the first lockdown in 2020. Methamphetamine trends appeared to have remained steady throughout the second lockdown period before increasing steeply after it ended. For most of 2020, cocaine use remained steady, with an increase after the second lockdown. MDMA use decreased after the start of the first lockdown and remained steady throughout most of 2020 and 2021. In comparison to 2020, trends in 2021 were less variable and stimulant use did not appear to be as associated with COVID-19 restrictions. Overall, this study was able to show the impact of lockdown periods and the related social restrictions on illicit stimulant use. ENVIRONMENTAL IMPLICATION: Illicit drugs are hazardous chemicals, of concern both to humans and the environment. While studies have been undertaken to understand their temporal trends, this work utilizes wastewater-based epidemiology and daily sampling to provide a comprehensive understanding of the impact of the COVID-19 pandemic on the use of methamphetamine, MDMA and cocaine on one of the most locked-down cities in the world. Understanding the consequences of this significant intervention on illicit drug use could provide valuable insights into its potential environmental impact.
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