Vitis vinifera

葡萄
  • 文章类型: Journal Article
    背景:基于葡萄提取物的静脉活性药物(VAD)在韩国被广泛使用。然而,关于VAD的临床效果以及与其他组的正面比较的研究有限.该试验旨在评估葡萄种子提取物在缓解慢性静脉疾病(CVD)患者的静脉症状和改善生活质量方面是否不劣于微粉化纯化的类黄酮成分(MPFF)。
    方法:在这项双盲前瞻性随机试验中,13家医院的病人,通过双工超声诊断为静脉功能不全,并在临床中将其分类为临床1、2或3级,病因学,解剖学,并纳入病理生理学分类。主要结果是慢性静脉疾病生活质量问卷(CIVIQ-20)评分在8周时从基线的变化。次要结局包括阿伯丁静脉曲张问卷(AVVQ)的变化,视觉模拟量表(VAS),和静脉临床严重程度评分(VCSS)在4周和8周从基线。此外,在第8周时测量了腿围的变化,并与基线进行了比较.
    结果:总计,纳入303名患者,并随机分配接受葡萄种子提取物(n=154)或MPFF(n=149)。与基线相比,两组在8周时的CIVIQ-20评分均显着降低。从基线开始8周时,CIVIQ-20的变化在组间没有显着差异(-8.31±14.63vs.-10.35±14.38,P=0.29,95%置信区间[CI]-1.65至5.72)。95%CI的下限在6.9的预定义非劣效性范围内。此外,AVVQ,VAS,与基线相比,两组在随机分组后4周和8周VCSS评分均显著下降。组间各评分的降低没有观察到显著差异。与接受葡萄种子提取物的患者的基线相比,在8周时测量的小腿周长显着降低。
    结论:葡萄籽提取物在缓解静脉症状和改善CVD患者生活质量方面不劣于MPFF。
    BACKGROUND: Venoactive drugs (VADs) based on Vitis vinifera extract are widely used in Korea. However, studies on the clinical effects and head-to-head comparisons with other groups of VADs are limited. This trial aimed to evaluate whether Vitis vinifera seed extract was noninferior to the micronized purified flavonoid fraction (MPFF) in relieving venous symptoms and improving quality of life in patients with chronic venous disease.
    METHODS: In this double-blind prospective randomized trial, patients from 13 hospitals, who were diagnosed with venous incompetence by duplex ultrasound and classified as clinical class 1, 2, or 3 in the Clinical, Etiological, Anatomical, and Pathophysiological classifications were enrolled. The primary outcome was the change in the Chronic Venous Disease Quality of Life Questionnaire (CIVIQ-20) score at 8 weeks from baseline. Secondary outcomes included changes in the Aberdeen Varicose Vein Questionnaire, visual analog scale, and Venous Clinical Severity Score at 4 and 8 weeks from baseline. Moreover, the change in leg circumferences was measured at 8 weeks and compared to baseline.
    RESULTS: In total, 303 patients were enrolled and randomly assigned to receive either Vitis vinifera seed extract (n = 154) or MPFF (n = 149). The CIVIQ-20 scores at 8 weeks were significantly reduced compared to those at baseline in both groups. No significant intergroup difference in the change of CIVIQ-20 at 8 weeks from baseline was observed (-8.31 ± 14.63 vs. -10.35 ± 14.38, P = 0.29, 95% confidence interval -1.65 to 5.72). The lower limit of the 95% confidence interval was within the predefined noninferiority margin of 6.9. Furthermore, the Aberdeen Varicose Vein Questionnaire, visual analog scale, and Venous Clinical Severity Score scores significantly decreased at 4 and 8 weeks after randomization compared with baseline in both groups. No significant differences were observed in the reduction of each score between groups. The calf circumference measured at 8 weeks was significantly reduced compared to that at baseline in patients receiving Vitis vinifera seed extract.
    CONCLUSIONS: Vitis vinifera seed extract was noninferior to MPFF in relieving venous symptoms and improving the quality of life in patients with chronic venous disease.
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  • 文章类型: Journal Article
    阿尔茨海默病(Alzheimer’sdisease,AD)是影响60岁及以上人群的最常见的神经退行性疾病。然而,针对这种疾病的有效治疗药物的发现并没有取得最大进展,许多候选药物无法在不同阶段退出临床试验。同时,目前可用的抗胆碱酯酶(AChE)和单胺氧化酶-B(MAO-B)治疗AD只能改善临床症状,而最近批准的免疫治疗药物仍有疑问.因此,需要具有治疗该病病因潜力的新型治疗剂。在这里,这项研究试图研究许多来自葡萄的生物活性化合物作为抗AChE和MAO-B的有前途的药物的潜力。使用通过分子对接的计算方法,针对AChE和MAO-B筛选了23种生物活性剂,和结合评分低于标准配体的化合物进一步进行药物相似度和药代动力学筛选。所研究的试剂中的八种和十三种分别最佳地饱和了AChE和MAO-B的活性口袋,在目标的活性口袋中与许多氨基酸形成主要相互作用,在这些化合物中,只有芦丁通过违反四个参数而未能通过药物相似度测试,而全部显示出中等的药代动力学特征。许多葡萄衍生的生物活性化合物对AChE和MAO-B显示出优异的抑制潜力,与参考配体(他克林)相比,具有中等的药代动力学特征。因此,这些化合物被提出作为用于治疗AD的新型AChE和MAO-B抑制剂,并且湿实验室分析对于确认它们的效力是必要的。
    Alzheimer\'s disease (AD) is the most prevalent neurodegenerative disease that affects people aged 60 years and above. Yet, the discovery of potent therapeutic agents against this disease has no utmost progress and a number of drug candidates could not make it out of the clinical trials at varied stages. At the same time, the currently available anti-cholinesterase (AChE) and monoamine oxidase-B (MAO-B) for the treatment of AD can only improve the clinical symptoms while the recently approved immunotherapy agent \"remains questionable. Thus, the need for novel therapeutic agents with the potential to treat the aetiology of the disease. Herein, this study sought to examine the potential of a number of bioactive compounds derived from Vitis vinifera as a promising agent against AChE and MAO-B. Using a computational approach via molecular docking 23 bioactive agents were screened against AChE and MAO-B, and the compounds with a binding score below that of the standard ligand were further subjected to drug-likeness and pharmacokinetic screening. Eight and thirteen of the studied agents optimally saturated the active pocket of the AChE and MAO-B respectively, forming principal interactions with a number of amino acids at the active pocket of the targets and among these compounds only rutin failed the drug-likeness test by violating four parameters while all showed moderate pharmacokinetics features. A number of Vitis vinifera-derived bioactive compounds show excellent inhibitory potential against AChE and MAO-B, and moderate pharmacokinetic features when compared to the reference ligand (tacrine). These compounds are therefore proposed as novel AChE and MAO-B inhibitors for the treatment of AD and wet-lab analysis is necessary to affirm their potency.
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  • 文章类型: Journal Article
    口腔健康是整体健康的忠实组成部分。根据世界卫生组织(WHO)龋齿是最普遍的非传染性疾病,是一个重要的普遍公共卫生问题。与这种疾病相关的主要致病生物是变形链球菌(S.mutans)。各种合成试剂如氯己定和氟化物是可商购的,以防止龋齿。然而,这些都有副作用。目前,研究致力于使用植物提取物来开发一种可以在口腔中安全使用的有效和生物相容性材料。
    收集了四株植物-Embilicaofficinalis,葡萄种子,番石榴(P.guajava)Linn叶子,和金合欢(A.nilotica),和提取物分别制备。这些提取物进行了植物化学分析,评估细菌生长和发酵。
    显著性水平设定为p<0.05。在所有系列稀释度下,所有植物提取物均抑制变形链球菌的生长,除了P.guajavaLinn和A.nilotica显示55CFU/mL和5CFU/mL,分别仅在1/1000稀释。植物化学分析证实,所有四种植物提取物都含有生物碱,碳水化合物,单宁,和类黄酮.甾体和蛋白质存在于番石榴林。葡萄中存在原花青素。皂苷和蒽醌仅存在于尼罗氏A中。
    所有提取物对变形链球菌均有效。这些可以尝试作为传统辅料的草药替代品。然而,这些结果必须在动物模型中额外评估毒性,和有效性必须通过对人体受试者的体内研究来评估。
    KripalaniKB,ThomasNA,ThimmaiahC,etal.4种植物提取物对变异链球菌的植物化学分析和功效的比较评价:体外研究。IntJClinPediatrDent2023;16(S-3):S258-S262。
    UNASSIGNED: Oral health is a loyal part of general health. As per the World Health Organization (WHO), dental caries is the most widespread noncommunicable disease and is a significant universal public health concern. The main causative organism associated with this disease is Streptococcus mutans (S. mutans). Various synthetic agents like chlorhexidine and fluorides are commercially available to prevent dental caries. However, these have side effects. Presently, research is engaged in the use of plant extracts to develop an effective and biocompatible material that may be used safely in the oral cavity.
    UNASSIGNED: Four plants were collected-Emblica officinalis, Vitis vinifera seeds, Psidium guajava (P. guajava) Linn leaves, and Acacia nilotica (A. nilotica), and extracts were prepared individually. These extracts were subjected to phytochemical analysis, and bacterial growth and fermentation were assessed.
    UNASSIGNED: The level of significance was set at p < 0.05. All the plant extracts inhibited S. mutans growth at all serial dilutions except P. guajava Linn and A. nilotica showing 55 CFU/mL and 5 CFU/mL, respectively in 1/1000 dilution only. The phytochemical analysis confirmed that all four plant extracts had alkaloids, carbohydrates, tannins, and flavonoids. Steroids and proteins are present in P. guajava Linn. Proanthocyanidins were present in Vitis vinifera. Saponins and Anthraquinones were present in A. nilotica exclusively.
    UNASSIGNED: All the extracts were effective against S. mutans. These could be tried as herbal alternatives to conventional adjuncts. However, these results must be additionally evaluated for toxicity in animal models, and effectiveness must be assessed using in vivo studies on human subjects.
    UNASSIGNED: Kripalani KB, Thomas NA, Thimmaiah C, et al. Comparative Evaluation of the Phytochemical Analysis and Efficacy of Four Plant-derived Extracts against Streptococcus mutans: An In Vitro Study. Int J Clin Pediatr Dent 2023;16(S-3):S258-S262.
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  • 文章类型: Journal Article
    酚类化合物及其衍生物在葡萄(Vitisvinifera)的收敛强度和特征中起主要感化。本研究调查了六个商品鲜食葡萄品种的酚类成分与收敛性之间的关系(每个白种,red-,和黑色皮肤)。定性和定量液相色谱-质谱分析用于鉴定皮肤中特定品种的酚类成分,并由训练有素的感官小组评估和描述总的收敛性强度。在六个品种中鉴定出30种酚类化合物。酚类成分的主成分分析表明,葡萄皮的收敛性强度与儿茶素呈正相关,表儿茶素,表儿茶素-3-O-没食子酸酯,和原花色素二聚体B1、B2和B3。对这些化合物进行进一步的正交偏最小二乘判别分析表明,儿茶素是与葡萄皮收敛性最强且正相关的物质(R=0.904)。实际应用:这项研究提供了更好地理解酚类成分和鲜食葡萄收敛性之间的关系,并强调了一种潜在的代谢标记,可用作鲜食葡萄浆果复杂的收敛性感官属性的预测指标。
    Phenolic compounds and their derivatives play a major role in the intensity and characteristics of grape (Vitis vinifera) astringency. The present study investigated the relationship between phenolic composition and astringency of six commercial table grape varieties (two of each white-, red-, and black-skinned). Qualitative and quantitative liquid chromatography-mass spectrometry analysis was used to identify the variety-specific phenolic profiles in the skins and total astringency intensity was assessed and described by a trained sensory panel. Thirty phenolic compounds were identified among the six varieties. Principal component analysis of the phenolic profiles revealed that the intensity of astringency of grape skin was positively correlated with catechin, epicatechin, epicatechin-3-O-gallate, and proanthocyanidin dimers B1, B2, and B3. A further orthogonal partial least-squares discrimination analysis of these compounds showed that catechin was the substance most strongly and positively correlated (R = 0.904) with grape skin astringency. PRACTICAL APPLICATION: This study provided a better understanding of the relationships between phenolic composition and table grape astringency and highlighted a potential metabolic marker that could be used as a predictor for the complex astringency sensory attributes of table grape berries.
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  • 文章类型: Journal Article
    红肉葡萄品种,称为葡萄或染色葡萄,在皮肤和肉中都含有花青素。这些酚类化合物表现出优异的着色能力,作为抗氧化剂,它们是粮食作物中重要的生物活性化合物。在这项工作中,比较了从匈牙利西南部Pécs的基因库中收集的15个葡萄品种的葡萄浆果的花青素模式。来自匈牙利的许多品种的花青素概况,例如“Bíborkadarka”,\'Kármin\',\'Kurucvér\',和\'Turán\'是第一次报告。使用高效液相色谱和光电二极管阵列检测器分析了从皮肤和果汁中分别提取的花青素。为了鉴定化合物,使用高分辨率轨道阱质谱。总而言之,对21种花青素进行了鉴定和定量.我们发现,所有研究品种的皮肤和果汁中的花色苷模式都存在显着差异。对于葡萄品种,皮肤中主要的花青素是malvidin-3-O-葡萄糖苷,而果汁中的主要色素是牡丹苷-3-O-葡萄糖苷。第一次,在两个VitisVinifera品种中检测到大量的二糖苷,具有直接关系。总的来说,皮肤的色素成分比果汁复杂得多。从化学分类学的角度来看,具有所呈现模式的比较研究提供了有价值和有益的信息。我们的结果还有助于选择具有所需花青素的适当品种,用于食用着色或酿酒目的。
    The red-fleshed grape cultivars, called teinturier or dyer grapes, contain anthocyanins in both the skin and flesh. These phenolic compounds exhibit excellent coloring ability, and as antioxidants, they are important bioactive compounds in food crops. In this work, anthocyanin patterns of grape berries of fifteen teinturier varieties collected from the gene bank located at Pécs in the southwest of Hungary were compared. Anthocyanin profiles of numerous varieties originating from Hungary such as \'Bíborkadarka\', \'Kármin\', \'Kurucvér\', and \'Turán\' are reported for the first time. Anthocyanins extracted separately from the skin and juice were analyzed using high-performance liquid chromatography coupled with a photodiode array detector. For the identification of compounds, high-resolution orbitrap mass spectrometry was used. All in all, twenty-one anthocyanins were identified and quantified. We found that anthocyanin patterns differed significantly in the skin and juice for all investigated cultivars. For Vitis vinifera varieties, the predominant anthocyanin in the skin was malvidin-3-O-glucoside, while the main pigment in the juice was peonidin-3-O-glucoside. For the first time, a significant amount of diglucosides was detected in two Vitis Vinifera cultivars with a direct relationship. In general, the pigment composition of the skin was much more complex than that of the juice. The comparative study with presented patterns gives valuable and beneficial information from a chemotaxonomical point of view. Our results also help to choose the appropriate teinturier varieties with the desired anthocyanins for food coloring or winemaking purposes.
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  • 文章类型: Clinical Trial
    未经证实:SARS-CoV-2会导致严重的急性呼吸道综合症,促使全球需要新的抗病毒治疗和支持治疗这种危及生命的病毒引起的器官衰竭。这项研究旨在帮助开发一种新的传统波斯医学(TPM)药物,并评估其在有主要症状的COVID-19患者中的有效性和安全性。
    UNASSIGNED:2022年2月,一项随机临床试验对德黑兰EmamReza(AJA)医院收治的160名确诊为COVID-19的患者进行了研究,伊朗。在他们住院期间,干预组接受了伊朗卫生和医学教育部(MOHME)批准的治疗方案,由伊朗方案组成,无花果;葡萄,红花,Cicerarietinum,Descurainiasophia种子,朱巴,鸡汤,大麦汤,玫瑰水,藏红花,还有肉桂香料.所有患者在人口统计学方面进行了比较,临床,和实验室变量。
    UNASSIGNED:将160例COVID-19患者分为干预组和对照组。在基线特征中,干预组与对照组比较差异无统计学意义(p>0.05)。使用SPSS软件版本22,统计分析显示四个症状的显着差异:肌痛,弱点,头痛,咳嗽(p<0.05)。在5天的治疗期间,对照组C反应蛋白显著降低(p<0.05)。
    UNASSIGNED:虽然需要更多样本量更大的研究,拟议的组合似乎在治疗COVID-19患者的症状和炎症生物标志物如C反应蛋白方面有效.伊朗临床试验注册(IRCT)IRCT20220227054140N1。
    UNASSIGNED: SARS-CoV-2 causes severe acute respiratory syndrome prompting worldwide demand for new antiviral treatments and supportive care for organ failure caused by this life-threatening virus. This study aimed to help develop a new Traditional Persian Medicine (TPM) -based drug and assess its efficacy and safety in COVID-19 patients with major symptoms.
    UNASSIGNED: In February 2022, a randomized clinical trial was conducted among 160 patients with a confirmed diagnosis of COVID-19 admitted to Emam Reza (AJA) Hospital in Tehran, Iran. During their hospitalization, the intervention group received a treatment protocol approved by Iran\'s Ministry of Health and Medical Education (MOHME), consisting of an Iranian regimen, Ficus carica; Vitis vinifera, Safflower, Cicer arietinum, Descurainiasophia seeds, Ziziphus jujuba, chicken soup, barley soup, rose water, saffron, and cinnamon spices. All patients were compared in terms of demographics, clinical, and laboratory variables.
    UNASSIGNED: One hundred and sixty COVID-19 patients were divided into two groups: intervention and control. In baseline characteristics, there was no significant difference between the intervention and control groups (p>0.05). Using SPSS software version 22, statistical analysis revealed a significant difference in four symptoms: myalgia, weakness, headache, and cough (p<0.05). During the 5-day treatment period, the control group had significantly lower C-reactive protein (p<0.05).
    UNASSIGNED: While more research with a larger sample size is needed, the proposed combination appears to be effective in the treatment of symptoms as well as inflammatory biomarkers such as C-reactive protein in COVID-19 patients.Iranian registry of clinical trials (IRCT) IRCT20220227054140N1.
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  • 文章类型: Journal Article
    模拟植物生长,特别是功能结构植物模型,可以提供工具来研究硅环境变化的影响。当给出预测能力时,模拟研究可以用作减少现场实验工作量的试点研究。稳健的模型校准导致不那么脆弱的预测,虽然在预测中引入不确定性可以解释自然变异性,产生了随机植物生长模型。在这项研究中,可以实现到功能结构工厂模型中的随机模型组件虚拟雷司令是根据贝叶斯模型校准开发的,目的是将模型增强到完全随机模型。第一步,针对物候的模型开发,特别是budburst变异性,详细介绍了植物生长速率和节间生长。多目标优化应用于估计单组基数温度,它用于基于发展日方法的物候和生长建模。使用了在葡萄园中生长的两个季节的葡萄树进行的自由空气二氧化碳富集(FACE)测量;因此,模型的建立和选择与一项调查相结合,以确定是否包括2050年预期的升高的CO2条件的影响将改善模型。结果表明,自然变异性如何使可能的治疗效果的检测复杂化,但证明贝叶斯校准与混合模型相结合可以现实地恢复预测中的自然芽生长变异性。我们希望这些和进一步的随机模型扩展能够产生更真实的虚拟植物模拟来研究效果,用于进行树冠小气候及其对葡萄健康和品质的影响的计算机模拟研究。
    Modeling plant growth, in particular with functional-structural plant models, can provide tools to study impacts of changing environments in silico. Simulation studies can be used as pilot studies for reducing the on-field experimental effort when predictive capabilities are given. Robust model calibration leads to less fragile predictions, while introducing uncertainties in predictions allows accounting for natural variability, resulting in stochastic plant growth models. In this study, stochastic model components that can be implemented into the functional-structural plant model Virtual Riesling are developed relying on Bayesian model calibration with the goal to enhance the model towards a fully stochastic model. In this first step, model development targeting phenology, in particular budburst variability, phytomer development rate and internode growth are presented in detail. Multi-objective optimization is applied to estimate a single set of cardinal temperatures, which is used in phenology and growth modeling based on a development days approach. Measurements from two seasons of grapevines grown in a vineyard with free-air carbon dioxide enrichment (FACE) are used; thus, model building and selection are coupled with an investigation as to whether including effects of elevated CO2 conditions to be expected in 2050 would improve the models. The results show how natural variability complicates the detection of possible treatment effects, but demonstrate that Bayesian calibration in combination with mixed models can realistically recover natural shoot growth variability in predictions. We expect these and further stochastic model extensions to result in more realistic virtual plant simulations to study effects, which are used to conduct in silico studies of canopy microclimate and its effects on grape health and quality.
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  • 文章类型: Journal Article
    背景和目标:一些证据表明,在痔病中,黄酮类化合物如槲皮素通过增加血管壁阻力来降低毛细血管通透性,芦丁和维生素C如何具有抗氧化性能,积雪草对结缔组织具有修复性。设计了一项回顾性研究,以评估由微粉化类黄酮与维生素C和积雪草提取物组合组成的化合物的功效和安全性。越橘,和葡萄用于II级和III级痔病。患者和方法:49例患者的数据,18岁以上的人遵循免费的饮食方案,没有使用其他抗痔疮药物治疗,用由450毫克微粉化的地奥司明组成的化合物治疗,300毫克的积雪草,270毫克的微粉化橙皮苷,200毫克的维尼西拉,160毫克的维生素C,160毫克的蓝藻,140mg的微粉化槲皮素,收集130mg微粉化芦丁(每天1袋或2片)7天。根据Goligher量表的痔疮等级以及肛门直肠症状(水肿,脱垂,瘙痒,血栓形成,燃烧,疼痛,重弹,和出血)收集治疗前(T0)和治疗7天后(T7)。主要结果是根据通过直肠检查和化合物安全性评估的Goligher量表,痔疮减少至少一个程度。次要结果是通过对患者进行问卷调查评估的肛门直肠症状减轻。结果:44例患者(89.8%)的痔疮等级降低了至少一个等级(p<0.001)。没有注意到使用该化合物的不良事件。在所有评估的肛门直肠症状中观察到显著降低(p<0.05)。在收集的临床和人口统计学变量中没有确定对化合物的反应的预测因子。结论:根据Goligher评分,该化合物对II级和III级痔病患者是有效和安全的。
    Background and Aim: Several evidences have shown how, in hemorrhoidal disease, phlebotonic flavonoid agents such as quercetin reduce capillary permeability by increasing vascular walls resistance, how rutin and vitamin C have antioxidant properties, and that Centella asiatica has reparative properties towards the connective tissue. A retrospective study was designed in order to evaluate the efficacy and safety of a compound consisting of micronized flavonoids in combination with vitamin C and extracts of C. asiatica, Vaccinium myrtillus, and Vitis vinifera for grade II and III hemorrhoidal disease. Patients and Methods: Data of 49 patients, over 18, who were following a free diet regimen, not on therapy with other anti-hemorrhoid agents, treated with a compound consisting of 450 mg of micronized diosmin, 300 mg of C. asiatica, 270 mg of micronized hesperidin, 200 mg of V. vinifera, 160 mg of vitamin C, 160 mg of V. myrtillus, 140 mg of micronized quercetin, and 130 mg of micronized rutin (1 sachet or 2 tablets a day) for 7 days were collected. Hemorrhoid grade according to Goligher\'s scale together with anorectal symptoms (edema, prolapse, itching, thrombosis, burning, pain, tenesmus, and bleeding) both before treatment (T0) and after 7 days of therapy (T7) were collected. Primary outcomes were the reduction of at least one degree of hemorrhoids according to Goligher\'s scale assessed by proctological examination and compound safety. The secondary outcome was the reduction of anorectal symptoms assessed by questionnaires administered to patients. Results: Forty-four patients (89.8%) presented a reduction in hemorrhoidal grade of at least one grade (p < 0.001). No adverse events with the use of the compound were noted. A significant reduction was observed in all anorectal symptoms evaluated (p < 0.05). No predictors of response to the compound were identified among the clinical and demographic variables collected. Conclusion: The compound analyzed was effective and safe for patients with grade II and III hemorrhoidal disease according to Goligher\'s scale.
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  • 文章类型: Journal Article
    BACKGROUND: Grapevine, as an essential fruit crop with high economic values, has been the focus of molecular studies in diverse areas. Two challenges exist in the grapevine research field: (i) the lack of a rapid, user-friendly and effective RNA isolation protocol for mature dark-skinned berries and, (ii) the lack of validated reference genes that are stable for quantification of gene expression across desired experimental conditions. Successful isolation of RNA with sufficient yield and quality is essential for downstream analyses involving nucleic acids. However, ripe berries of dark-skinned grape cultivars are notoriously challenging in RNA isolation due to high contents of polyphenolics, polysaccharides, RNase and water.
    RESULTS: We have optimized an RNA isolation protocol through modulating two factors at the lysis step that could impact results of RNA isolation - 2-ME concentration and berry mass. By finding the optimal combination among the two factors, our refined protocol was highly effective in isolating total RNA with high yield and quality from whole mature berries of an array of dark-skinned wine grape cultivars. Our protocol takes a much shorter time to complete, is highly effective, and eliminates the requirement for hazardous organic solvents. We have also shown that the resulting RNA preps were suitable for multiple downstream analyses, including the detection of viruses and amplification of grapevine genes using reverse transcription-polymerase chain reaction (RT-PCR), gene expression analysis via quantitative reverse transcription PCR (RT-qPCR), and RNA Sequencing (RNA-Seq). By using RNA-Seq data derived from Cabernet Franc, we have identified seven novel reference gene candidates (CYSP, NDUFS8, YLS8, EIF5A2, Gluc, GDT1, and EF-Hand) with stable expression across two tissue types, three developmental stages and status of infection with grapevine leafroll-associated virus 3 (GLRaV-3). We evaluated the stability of these candidate genes together with two conventional reference genes (actin and NAD5) using geNorm, NormFinder and BestKeeper. We found that the novel reference gene candidates outperformed both actin and NAD5. The three most stable reference genes were CYSP, NDUFS8 and YSL8, whereas actin and NAD5 were among the least stable. We further tested if there would be a difference in RT-qPCR quantification results when the most stable (CYSP) and the least stable (actin and NAD5) genes were used for normalization. We concluded that both actin and NAD5 led to erroneous RT-qPCR results in determining the statistical significance and fold-change values of gene expressional change.
    CONCLUSIONS: We have formulated a rapid, safe and highly effective protocol for isolating RNA from recalcitrant berry tissue of wine grapes. The resulting RNA is of high quality and suitable for RT-qPCR and RNA-Seq. We have identified and validated a set of novel reference genes based on RNA-Seq dataset. We have shown that these new reference genes are superior over actin and NAD5, two of the conventional reference genes commonly used in early studies.
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  • 文章类型: Journal Article
    Extending over millennia, grapevine cultivation encompasses several thousand cultivars. Cultivar (cultivated variety) identification is traditionally dealt by ampelography, requiring repeated observations by experts along the growth cycle of fruiting plants. For on-time evaluations, molecular genetics have been successfully performed, though in many instances, they are limited by the lack of referable data or the cost element. This paper presents a convolutional neural network (CNN) framework for automatic identification of grapevine cultivar by using leaf images in the visible spectrum (400-700 nm). The VGG16 architecture was modified by a global average pooling layer, dense layers, a batch normalization layer, and a dropout layer. Distinguishing the intricate visual features of diverse grapevine varieties, and recognizing them according to these features was conceivable by the obtained model. A five-fold cross-validation was performed to evaluate the uncertainty and predictive efficiency of the CNN model. The modified deep learning model was able to recognize different grapevine varieties with an average classification accuracy of over 99%. The obtained model offers a rapid, low-cost and high-throughput grapevine cultivar identification. The ambition of the obtained tool is not to substitute but complement ampelography and quantitative genetics, and in this way, assist cultivar identification services.
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