RNA Interference

RNA 干扰
  • 文章类型: Journal Article
    原发性高尿毒症1型(PH1)患者,与肝草酸盐过度生产相关的遗传性疾病,经常经历肾结石复发和肾功能恶化。Lumasiran适用于PH1对下尿和血浆草酸盐(POx)的治疗。
    ILLUMINATE-A(NCT03681184)是一项III期试验,适用于年龄≥6岁的PH1患者,估计肾小球滤过率(eGFR)≥30ml/min/1.73m2。6个月的双盲安慰剂对照期后是延长期(≤54个月;所有患者均接受lumasiran)。我们报告了截至第36个月的中期数据。
    在39名患者中,26人中的24人(lumasiran/lumasiran组)和13人中的13人(安慰剂/lumasiran组)进入并继续延长期。在第36个月,在lumasiran/lumasiran组(lumasiran治疗36个月)和安慰剂/lumasiran组(lumasiran治疗30个月)中,与基线相比,24小时尿草酸盐(UOx)平均减少63%和58%,分别;76%和92%的患者达到24小时UOx排泄≤1.5×正常上限(ULN)。eGFR保持稳定。肾结石事件发生率从同意前12个月的每人每年(PY)2.31(95%置信区间:1.88-2.84)下降到lumasiran治疗期间的每人每年0.60(0.46-0.77)。髓质肾钙化病通常保持稳定或改善;大约三分之一的患者(两组)改善至完全缓解。最常见的lumasiran相关不良事件(AE)为轻度,瞬时注射部位反应。
    在PH1患者中,长期的lumasiran治疗导致UOx排泄持续减少,具有可接受的安全性和令人鼓舞的临床结果。有关视频摘要,请参见。
    UNASSIGNED: Patients with primary hyperoxaluria type 1 (PH1), a genetic disorder associated with hepatic oxalate overproduction, frequently experience recurrent kidney stones and worsening kidney function. Lumasiran is indicated for the treatment of PH1 to lower urinary and plasma oxalate (POx).
    UNASSIGNED: ILLUMINATE-A (NCT03681184) is a phase III trial in patients aged ≥6 years with PH1 and estimated glomerular filtration rate (eGFR) ≥30 ml/min per 1.73 m2. A 6-month double-blind placebo-controlled period is followed by an extension period (≤54 months; all patients receive lumasiran). We report interim data through month 36.
    UNASSIGNED: Of 39 patients enrolled, 24 of 26 (lumasiran/lumasiran group) and 13 of 13 (placebo/lumasiran group) entered and continue in the extension period. At month 36, in the lumasiran/lumasiran group (36 months of lumasiran treatment) and placebo/lumasiran group (30 months of lumasiran treatment), mean 24-hour urinary oxalate (UOx) reductions from baseline were 63% and 58%, respectively; 76% and 92% of patients reached a 24-hour UOx excretion ≤1.5× the upper limit of normal (ULN). eGFR remained stable. Kidney stone event rates decreased from 2.31 (95% confidence interval: 1.88-2.84) per person-year (PY) during the 12 months before consent to 0.60 (0.46-0.77) per PY during lumasiran treatment. Medullary nephrocalcinosis generally remained stable or improved; approximately one-third of patients (both groups) improved to complete resolution. The most common lumasiran-related adverse events (AEs) were mild, transient injection-site reactions.
    UNASSIGNED: In patients with PH1, longer-term lumasiran treatment led to sustained reduction in UOx excretion, with an acceptable safety profile and encouraging clinical outcomes.See for Video Abstract.
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  • 文章类型: Journal Article
    类胡萝卜素裂解加氧酶可以将类胡萝卜素裂解成一系列生物学上重要的产物。类胡萝卜素异氧化酶(NinaB)和β,β-胡萝卜素15,15'-单加氧酶(BCO1)是两种重要的加氧酶。为了了解两种加氧酶在甲壳类动物中的作用,我们首先研究了中华绒螯蟹(Eriocheirsinensis)基因组中的NinaB样(EsNinaBl)和BCO1样(EsBCO1l)。然后通过分析它们的表达模式来破译它们的功能,体外β-胡萝卜素降解试验,和RNA干扰。结果显示,EsNinaBl和EsBCO1l都含有RPE65结构域,并且在肝胰腺中表现出高水平的表达。在蜕皮阶段,EsNinaBl在C阶段表现出显着的上调,而EsBCO1l在AB阶段显示出显著较高的表达水平。此外,饮食中补充β-胡萝卜素导致肝胰腺中EsNinaBl和EsBCO1l的表达显着增加。进一步的功能测定表明,在大肠杆菌中表达的EsNinaBl经历了其颜色的显著变化,从橙色到浅色;此外,其β-胡萝卜素裂解率高于EsBCO1l。在中华幼年大肠杆菌中击倒EsNinaBl或EsBCO1l后,这两个基因的表达水平在肝胰腺中显著降低,伴随着红色(a*)值的显着增加。此外,当EsNinaBl-mRNA被抑制时,在肝胰腺中观察到β-胡萝卜素含量的显着增加,这表明EsNinaBl在类胡萝卜素裂解中起着重要作用,特别是β-胡萝卜素。总之,我们的发现表明,EsNinaBl和EsBCO1l可能表现出功能性共表达,并在螃蟹的类胡萝卜素裂解中起关键作用。
    Carotenoid cleavage oxygenases can cleave carotenoids into a range of biologically important products. Carotenoid isomerooxygenase (NinaB) and β, β-carotene 15, 15\'-monooxygenase (BCO1) are two important oxygenases. In order to understand the roles that both oxygenases exert in crustaceans, we first investigated NinaB-like (EsNinaBl) and BCO1-like (EsBCO1l) within the genome of Chinese mitten crab (Eriocheir sinensis). Their functions were then deciphered through an analysis of their expression patterns, an in vitro β-carotene degradation assay, and RNA interference. The results showed that both EsNinaBl and EsBCO1l contain an RPE65 domain and exhibit high levels of expression in the hepatopancreas. During the molting stage, EsNinaBl exhibited significant upregulation in stage C, whereas EsBCO1l showed significantly higher expression levels at stage AB. Moreover, dietary supplementation with β-carotene resulted in a notable increase in the expression of EsNinaBl and EsBCO1l in the hepatopancreas. Further functional assays showed that the EsNinaBl expressed in E. coli underwent significant changes in its color, from orange to light; in addition, its β-carotene cleavage was higher than that of EsBCO1l. After the knockdown of EsNinaBl or EsBCO1l in juvenile E. sinensis, the expression levels of both genes were significantly decreased in the hepatopancreas, accompanied by a notable increase in the redness (a*) values. Furthermore, a significant increase in the β-carotene content was observed in the hepatopancreas when EsNinaBl-mRNA was suppressed, which suggests that EsNinaBl plays an important role in carotenoid cleavage, specifically β-carotene. In conclusion, our findings suggest that EsNinaBl and EsBCO1l may exhibit functional co-expression and play a crucial role in carotenoid cleavage in crabs.
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  • 文章类型: Journal Article
    ARO-HIF2是一种siRNA药物,旨在选择性靶向缺氧诱导因子2α(HIF2α),从而中断透明细胞肾细胞癌(ccRCC)的下游致癌信号。这项第一阶段研究(AROHIF21001)的目的是评估安全性,耐受性,药代动力学,并建立推荐的2期剂量。
    在至少2种包括VEGF和免疫检查点抑制剂的先前疗法后,患有ccRCC和进行性疾病的受试者逐渐纳入静脉内给予225、525或1,050mg的ARO-HIF2的剂量递增队列每周。
    26名受试者接受ARO-HIF2。最常见的治疗紧急不良事件(AE)不考虑因果关系是疲劳(50.0%),头晕(26.9%),呼吸困难(23.1%),恶心(23.1%)。4名受试者(15.4%)有治疗相关的严重AE。特别感兴趣的AE包括神经病变,缺氧,和呼吸困难。ARO-HIF2在48小时内几乎完全从血浆循环中清除,肾脏清除率最小。在给药前和给药后肿瘤活检之间观察到HIF2α的减少,但是幅度变化很大。客观有效率为7.7%,疾病控制率为38.5%。反应伴随着ARO-HIF2在肿瘤细胞中的摄取,HIF2α下调,以及快速抑制副肿瘤性红细胞增多症患者产生的促红细胞生成素(EPO)。
    ARO-HIF2下调部分受试者晚期ccRCC抑制肿瘤生长的HIF2α。脱靶神经毒性和低反应率阻碍了进一步的发展。这项研究提供了siRNA可以以特定方式靶向肿瘤的概念证明。
    UNASSIGNED: ARO-HIF2 is an siRNA drug designed to selectively target hypoxia-inducible factor-2α (HIF2α) interrupting downstream pro-oncogenic signaling in clear cell renal cell carcinoma (ccRCC). The aims of this Phase 1 study (AROHIF21001) were to evaluate safety, tolerability, pharmacokinetics, and establish a recommended Phase 2 dose.
    UNASSIGNED: Subjects with ccRCC and progressive disease after at least 2 prior therapies that included VEGF and immune checkpoint inhibitors were progressively enrolled into dose-escalation cohorts of ARO-HIF2 administered intravenously at 225, 525, or 1,050 mg weekly.
    UNASSIGNED: Twenty-six subjects received ARO-HIF2. The most common treatment emergent adverse events (AE) irrespective of causality were fatigue (50.0%), dizziness (26.9%), dyspnea (23.1%), and nausea (23.1%). Four subjects (15.4%) had treatment-related serious AEs. AEs of special interest included neuropathy, hypoxia, and dyspnea. ARO-HIF2 was almost completely cleared from plasma circulation within 48 hours with minimal renal clearance. Reductions in HIF2α were observed between pre- and post-dosing tumor biopsies, but the magnitude was quite variable. The objective response rate was 7.7% and the disease control rate was 38.5%. Responses were accompanied by ARO-HIF2 uptake in tumor cells, HIF2α downregulation, as well as rapid suppression of tumor produced erythropoietin (EPO) in a patient with paraneoplastic polycythemia.
    UNASSIGNED: ARO-HIF2 downregulated HIF2α in advanced ccRCC-inhibiting tumor growth in a subset of subjects. Further development was hampered by off-target neurotoxicity and low response rate. This study provides proof of concept that siRNA can target tumors in a specific manner.
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  • 文章类型: Journal Article
    背景:遗传性转甲状腺素蛋白(ATTRv,v对于变体)淀粉样变性是一种罕见的,进步,具有多系统表现的致命疾病,由甲状腺素运载蛋白(TTR)基因的致病变异引起。Vutrisiran,一种RNA干扰治疗,导致快速TTR敲低,在3期HELIOS-A研究(NCT03759379)中,ATTRv淀粉样变性伴多发性神经病变患者的神经病变和生活质量(QOL)与外用安慰剂相比有所改善。该事后分析评估了基线神经病变严重程度对vutrisiran治疗反应的影响。
    方法:患者被随机(3:1)接受vutrisiran(n=122;25mg皮下注射,每3个月一次)或patisiran(n=42;0.3mg/kg静脉输注,每3周一次),作为参考组。在这个事后分析中,患者被分组为基线神经病变损害评分(NIS)增加的四分位数:四分位数(Q)1≥5.0~≤20.5;Q2>20.5~≤44.1;Q3>44.1~≤73.1;Q4>73.1~≤127.0.从基线到第18个月的平均变化按四分位数总结了一系列疗效终点。
    结果:在所有基线NIS四分位数中,vutrisiran在神经病变严重程度(改良NIS+7)的测量中显示出与外部安慰剂相比的益处,QOL(诺福克生活质量-糖尿病神经病变),残疾(Rasch构建的总体残疾量表),步态速度(10米步行测试),和营养状况(修正体重指数)。总的来说,基线时NIS四分位数较低和较高(较不严重的神经病变)的患者在第18个月时得分较好.在第18个月,外部安慰剂组在所有措施中逐渐恶化。
    结论:Vutrisiran在所有四个基线神经病变严重程度四分位数中,与外部安慰剂相比,在神经功能和其他关键疗效指标方面均显示出益处。在病程早期开始使用vutrisiran的患者在18个月后仍保持最高的神经功能水平。强调早期诊断和治疗的重要性。
    背景:ClinicalTrials.gov:NCT03759379。
    BACKGROUND: Hereditary transthyretin (ATTRv, v for variant) amyloidosis is a rare, progressive, fatal disease with multisystem manifestations, caused by pathogenic variants in the transthyretin (TTR) gene. Vutrisiran, an RNA interference therapeutic that results in rapid TTR knockdown, improved neuropathy and quality of life (QOL) versus external placebo in patients with ATTRv amyloidosis with polyneuropathy in the phase 3 HELIOS-A study (NCT03759379). This post hoc analysis evaluates the impact of baseline neuropathy severity on response to vutrisiran treatment.
    METHODS: Patients were randomized (3:1) to vutrisiran (n = 122; 25 mg subcutaneous injection once every 3 months) or patisiran (n = 42; 0.3 mg/kg intravenous infusion once every 3 weeks), which served as a reference group. In this post hoc analysis, patients were grouped into quartiles of increasing baseline Neuropathy Impairment Score (NIS): Quartile (Q)1 ≥ 5.0 to ≤ 20.5; Q2 > 20.5 to ≤ 44.1; Q3 > 44.1 to ≤ 73.1; Q4 > 73.1 to ≤ 127.0. Mean change from baseline to Month 18 was summarized by quartile for a range of efficacy endpoints.
    RESULTS: Across all baseline NIS quartiles, vutrisiran demonstrated benefit versus external placebo in measures of neuropathy severity (modified NIS + 7), QOL (Norfolk Quality of Life-Diabetic Neuropathy), disability (Rasch-built Overall Disability Scale), gait speed (10-m walk test), and nutritional status (modified body mass index). Overall, patients in lower versus higher NIS quartiles (less severe neuropathy) at baseline maintained better scores at Month 18. The external placebo group progressively worsened in all measures at Month 18.
    CONCLUSIONS: Vutrisiran demonstrated benefit in neurologic function and other key efficacy measures versus external placebo across all four baseline neuropathy severity quartiles. Patients initiating vutrisiran earlier in their disease course retained the highest neurologic function level after 18 months, highlighting the importance of early diagnosis and treatment.
    BACKGROUND: ClinicalTrials.gov: NCT03759379.
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  • 文章类型: Journal Article
    背景:乙醛是一种常用于控制波形藻的杀软体动物剂。它的功效受到水温的显著影响,虽然潜在的机制还没有得到充分的探索。结果:在这项研究中,我们系统地研究了乙醛对福寿螺的温度效应和分子机制。在不同温度下的杀软体动物作用表明,甲醛的杀软体动物活性随着温度的降低而显著降低。在10°C时,LC50值仅为458.8176mg/L,在25°C时飙升至0.8249mg/L的高位。通过转录组学分析了低温(10°C)对甲醛杀软体动物活性的影响。结果表明,低温的影响主要影响免疫力,脂质合成,和氧化应激。应激和免疫相关基因的表达,比如MANF,HSP70、Cldf7、HSP60和PclaieFc,显著增加。此外,我们使用RNAi研究了五个靶基因的功能,发现Cldf7和HSP70可以显着影响甲醛的杀软体动物作用。Cldf7干扰后,Pomaceacanaliculata的死亡率增加了36.17%(72小时),HSP70干扰后增加了48.90%(72小时)。结论:我们的发现表明,低温可以诱导Cldf7和HSP70基因的广泛表达。导致甲醛的杀软体动物活性大幅减少本文受版权保护。保留所有权利。
    BACKGROUND: Metaldehyde is a molluscicide commonly used to control Pomacea canaliculate. Its efficacy is significantly impacted by water temperature, although the underlying mechanisms have not been fully explored.
    RESULTS: In this study, we systematically investigated the temperature effect and molecular mechanisms of metaldehyde on P. canaliculata. The molluscicidal effect at various temperatures indicated that metaldehyde\'s molluscicidal activity significantly decreases with a drop in temperature. The LC50 value was only 458.8176 mg/L at 10 °C, while it surged to a high of 0.8249 mg/L at 25 °C. The impact of low temperature (10 °C) on metaldehyde\'s molluscicidal activity was analyzed via transcriptomics. The results revealed that the effect of low temperature primarily influences immunity, lipid synthesis, and oxidative stress. The expression of stress and immune-related genes, such as MANF, HSP70, Cldf7, HSP60, and PclaieFc, significantly increased. Furthermore, we studied the function of five target genes using RNA interference (RNAi) and discovered that Cldf7 and HSP70 could notably affect metaldehyde\'s molluscicidal effect. The mortality of P. canaliculata increased by 36.17% (72 h) after Cldf7 interference and by 48.90% (72 h) after HSP70 interference.
    CONCLUSIONS: Our findings demonstrate that low temperature can induce the extensive expression of the Cldf7 and HSP70 genes, resulting in a substantial reduction in metaldehyde\'s molluscicidal activity. © 2024 Society of Chemical Industry.
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  • 文章类型: Journal Article
    合理设计在核酸纳米载体系统的现代发展中至关重要。随着聚合物材料作为脂类载体替代品的重要性日益凸显,理解它们的结构-功能关系变得至关重要。这里,我们介绍了一种新开发的基于Martini3力场的聚乙烯亚胺(PEI)粗粒度模型。该模型有助于真实大小的PEI分子的分子动力学模拟,以分子量为1.3、5、10和25kDa的分子为例,支化度在50.0和61.5%之间。我们使用该模型来研究小干扰RNA(siRNA)与PEI复合的热力学。我们的模拟强调了静电相互作用在络合过程中的关键作用。热力学分析显示,随着质子化的增加,结合亲和力更强,特别是在酸性(内体)pH下,与中性条件相比。此外,发现PEI的分子量是结合动力学的关键决定因素:较小的PEI分子紧密包裹siRNA,而较大的向外延伸,促进与多个RNA分子的复合物的形成。实验验证,包括等温滴定量热法和单分子荧光光谱法,与我们的计算预测吻合得很好。我们的发现不仅验证了PEI模型的保真度,而且强调了计算机数据在聚合物药物载体合理设计中的重要性。计算预测和实验验证之间的协同作用,正如这里所展示的,为药物载体设计提供了一种精致而精确的方法。
    Rational design is pivotal in the modern development of nucleic acid nanocarrier systems. With the rising prominence of polymeric materials as alternatives to lipid-based carriers, understanding their structure-function relationships becomes paramount. Here, we introduce a newly developed coarse-grained model of polyethylenimine (PEI) based on the Martini 3 force field. This model facilitates molecular dynamics simulations of true-sized PEI molecules, exemplified by molecules with molecular weights of 1.3, 5, 10, and 25 kDa, with degrees of branching between 50.0 and 61.5%. We employed this model to investigate the thermodynamics of small interfering RNA (siRNA) complexation with PEI. Our simulations underscore the pivotal role of electrostatic interactions in the complexation process. Thermodynamic analyses revealed a stronger binding affinity with increased protonation, notably in acidic (endosomal) pH, compared to neutral conditions. Furthermore, the molecular weight of PEI was found to be a critical determinant of binding dynamics: smaller PEI molecules closely enveloped the siRNA, whereas larger ones extended outward, facilitating the formation of complexes with multiple RNA molecules. Experimental validations, encompassing isothermal titration calorimetry and single-molecule fluorescence spectroscopy, aligned well with our computational predictions. Our findings not only validate the fidelity of our PEI model but also accentuate the importance of in silico data in the rational design of polymeric drug carriers. The synergy between computational predictions and experimental validations, as showcased here, signals a refined and precise approach to drug carrier design.
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  • 文章类型: Journal Article
    血管紧张素原是肾素-血管紧张素-醛固酮系统的最上游前体,血压(BP)调节的关键途径。齐勒贝西兰,一种研究性RNA干扰治疗剂,目标肝血管紧张素原合成。
    评估不同给药方案的抗高血压疗效和安全性。
    第二阶段,随机,双盲,在4个国家/地区的78个地点进行了齐列贝西兰与安慰剂的剂量范围研究.筛查开始于2021年7月,6个月研究的最后一次患者就诊于2023年6月。患有轻度至中度高血压的成年人,定义为抗高血压冲洗后的白天平均动态收缩压(SBP)为135至160mmHg,是随机的。
    随机分为4种皮下齐列贝西兰方案(每6个月一次150、300或600mg或每3个月一次300mg)或安慰剂(每3个月一次)中的1种,持续6个月。
    主要终点是从基线到第3个月的24小时平均动态SBP的最小二乘平均值(LSM)变化的组间差异。
    在394名随机患者中,377(302名接受齐列贝西兰,75名接受安慰剂)包括完整的分析集(93名Black患者[24.7%];167名[44.3%]女性;平均[SD]年龄,57[11]年)。3个月时,齐列贝西兰患者的24小时动态SBP相对于基线的平均变化为-7.3mmHg(95%CI,-10.3至-4.4),150毫克,每6个月一次;-10.0mmHg(95%CI,-12.0至-7.9)300毫克,每3个月或每6个月一次;-8.9mmHg(95%CI,-11.9至-6.0)600毫克,每6个月一次;安慰剂和6.8mmHg(95%CI,3.6-9.9)。从基线到第3个月,LSM与安慰剂的差异为-14.1mmHg(95%CI,-19.2至-9.0;P<.001),150毫克,每6个月一次;-16.7mmHg(95%CI,-21.2至-12.3;P<.001),300毫克,每3个月或每6个月一次;和-15.7mmHg(95%CI,-20.8至-10.6;P<.001)600毫克,每6个月一次。超过6个月,60.9%的患者接受zilebesiran的患者有不良事件,50.7%的患者接受安慰剂,3.6%的患者有严重不良事件,6.7%的患者接受安慰剂。非严重药物相关的不良事件发生在16.9%的齐列贝西兰治疗的患者(主要是注射部位反应和轻度高钾血症)和8.0%的安慰剂治疗的患者中。
    在患有轻度至中度高血压的成年人中,在3个月或6个月的不同剂量范围内,齐列贝西兰治疗显著降低了第3个月时的24小时平均动态SBP.
    ClinicalTrials.gov标识符:NCT04936035。
    Angiotensinogen is the most upstream precursor of the renin-angiotensin-aldosterone system, a key pathway in blood pressure (BP) regulation. Zilebesiran, an investigational RNA interference therapeutic, targets hepatic angiotensinogen synthesis.
    To evaluate antihypertensive efficacy and safety of different zilebesiran dosing regimens.
    This phase 2, randomized, double-blind, dose-ranging study of zilebesiran vs placebo was performed at 78 sites across 4 countries. Screening initiation occurred in July 2021 and the last patient visit of the 6-month study occurred in June 2023. Adults with mild to moderate hypertension, defined as daytime mean ambulatory systolic BP (SBP) of 135 to 160 mm Hg following antihypertensive washout, were randomized.
    Randomization to 1 of 4 subcutaneous zilebesiran regimens (150, 300, or 600 mg once every 6 months or 300 mg once every 3 months) or placebo (once every 3 months) for 6 months.
    The primary end point was between-group difference in least-squares mean (LSM) change from baseline to month 3 in 24-hour mean ambulatory SBP.
    Of 394 randomized patients, 377 (302 receiving zilebesiran and 75 receiving placebo) comprised the full analysis set (93 Black patients [24.7%]; 167 [44.3%] women; mean [SD] age, 57 [11] years). At 3 months, 24-hour mean ambulatory SBP changes from baseline were -7.3 mm Hg (95% CI, -10.3 to -4.4) with zilebesiran, 150 mg, once every 6 months; -10.0 mm Hg (95% CI, -12.0 to -7.9) with zilebesiran, 300 mg, once every 3 months or every 6 months; -8.9 mm Hg (95% CI, -11.9 to -6.0) with zilebesiran, 600 mg, once every 6 months; and 6.8 mm Hg (95% CI, 3.6-9.9) with placebo. LSM differences vs placebo in change from baseline to month 3 were -14.1 mm Hg (95% CI, -19.2 to -9.0; P < .001) with zilebesiran, 150 mg, once every 6 months; -16.7 mm Hg (95% CI, -21.2 to -12.3; P < .001) with zilebesiran, 300 mg, once every 3 months or every 6 months; and -15.7 mm Hg (95% CI, -20.8 to -10.6; P < .001) with zilebesiran, 600 mg, once every 6 months. Over 6 months, 60.9% of patients receiving zilebesiran had adverse events vs 50.7% patients receiving placebo and 3.6% had serious adverse events vs 6.7% receiving placebo. Nonserious drug-related adverse events occurred in 16.9% of zilebesiran-treated patients (principally injection site reactions and mild hyperkalemia) and 8.0% of placebo-treated patients.
    In adults with mild to moderate hypertension, treatment with zilebesiran across a range of doses at 3-month or 6-month intervals significantly reduced 24-hour mean ambulatory SBP at month 3.
    ClinicalTrials.gov Identifier: NCT04936035.
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  • 文章类型: Journal Article
    番茄是研究生殖过程的方便对象,这已经成为一个经典。开花和坐果等复杂过程需要了解分子相互作用的基本原理,基因和蛋白质的结构,转录调控信号通路的构建,包括顺式调控元件(启动子和增强子)的同步作用,反式调节元件(转录因子和调节RNA),和转座因子和表观遗传调节因子(DNA甲基化和乙酰化,染色质结构)。这里,我们讨论了番茄(2017-2023)的研究现状,致力于研究使用基因组编辑技术调节开花和信号调节系统的基因的功能,RNA干扰基因沉默,和基因过度表达,包括异源表达。尽管已经确定了这些调节成分的中心候选基因,他们关系的完整图景尚未形成。因此,本文总结了与开花和坐果过程研究有关的最新成果。这项工作试图展示基因相互作用方案,以更好地理解所考虑的事件。
    The tomato is a convenient object for studying reproductive processes, which has become a classic. Such complex processes as flowering and fruit setting require an understanding of the fundamental principles of molecular interaction, the structures of genes and proteins, the construction of signaling pathways for transcription regulation, including the synchronous actions of cis-regulatory elements (promoter and enhancer), trans-regulatory elements (transcription factors and regulatory RNAs), and transposable elements and epigenetic regulators (DNA methylation and acetylation, chromatin structure). Here, we discuss the current state of research on tomatoes (2017-2023) devoted to studying the function of genes that regulate flowering and signal regulation systems using genome-editing technologies, RNA interference gene silencing, and gene overexpression, including heterologous expression. Although the central candidate genes for these regulatory components have been identified, a complete picture of their relationship has yet to be formed. Therefore, this review summarizes the latest achievements related to studying the processes of flowering and fruit set. This work attempts to display the gene interaction scheme to better understand the events under consideration.
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  • 文章类型: Journal Article
    杆状病毒是感染不同物种的鳞翅目的病毒病原体,双翅目,和膜翅目,全球分布。由于它们的生物学特性和来自这些实体的生物技术应用,杆状病毒科是自然科学中研究和操纵的重要课题。随着RNA干扰机制的出现,已经描述了杆状病毒基因的存在,这些基因不编码蛋白质,而是产生类似于microRNAs(miRNAs)的转录本。这些miRNA在功能上与基因表达的调节相关,病毒和宿主序列。本文对miRNA的生物发生进行了全面的综述,函数,和一般的表征,特别关注杆状病毒中鉴定的那些。此外,它深入研究了杆状病毒miRNAs在调节病毒和宿主基因中的特定作用,并提出了结构和热力学稳定性研究,这些研究可用于检测具有预测性实用性的共同特征。这篇综述旨在扩大我们对杆状病毒miRNAome的理解,有助于改善基于杆状病毒的生物农药的生产,害虫抗性现象的管理,增强重组蛋白生产系统,以及开发多样化和改良的BacMam载体以满足生物医学需求。
    Baculoviruses are viral pathogens that infect different species of Lepidoptera, Diptera, and Hymenoptera, with a global distribution. Due to their biological characteristics and the biotechnological applications derived from these entities, the Baculoviridae family is an important subject of study and manipulation in the natural sciences. With the advent of RNA interference mechanisms, the presence of baculoviral genes that do not code for proteins but instead generate transcripts similar to microRNAs (miRNAs) has been described. These miRNAs are functionally associated with the regulation of gene expression, both in viral and host sequences. This article provides a comprehensive review of miRNA biogenesis, function, and characterization in general, with a specific focus on those identified in baculoviruses. Furthermore, it delves into the specific roles of baculoviral miRNAs in regulating viral and host genes and presents structural and thermodynamic stability studies that are useful for detecting shared characteristics with predictive utility. This review aims to expand our understanding of the baculoviral miRNAome, contributing to improvements in the production of baculovirus-based biopesticides, management of resistance phenomena in pests, enhancement of recombinant protein production systems, and development of diverse and improved BacMam vectors to meet biomedical demands.
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  • 文章类型: Journal Article
    静态异速是形态变异的主要组成部分。关于异速生长的许多文献都研究了不同途径的功能扰动如何影响性状大小与体型之间的关系。通常,这样做的明确目标是确定能够感知器官大小和调节相对生长的发育机制。然而,相对性状大小的变化也可以由一系列其他明显不同的发育过程引起,例如图案或组织折叠的变化,然而,标准的单变量生物识别方法通常无法区分替代解释。这里,我们利用几何形态计量学来研究已知影响粪甲虫角大小的功能基因操作也概括了角形状测速的影响程度。我们认为,控制相对生长的途径的敲低表型应与自然异速变异引起的形状变异非常相似。相比之下,我们预测,如果基因主要影响替代发育过程,击倒效果应与异速异形配合度差。我们发现几个基因的敲低效应(例如,doublesex,Foxo)确实与形状异速,表明它们相应的途径确实可能主要在相对性状生长的调节中起作用。相比之下,其他击倒效果(例如,无远端,dachs)未能与测速对准,将这些途径牵涉到潜在的不依赖于缩放的过程中。我们的发现缓和了对关注性状长度的研究的解释,并强调了多变量方法研究异速和表型可塑性的有用性。
    Static allometry is a major component of morphological variation. Much of the literature on the development of allometry investigates how functional perturbations of diverse pathways affect the relationship between trait size and body size. Often, this is done with the explicit objective to identify developmental mechanisms that enable the sensing of organ size and the regulation of relative growth. However, changes in relative trait size can also be brought about by a range of other distinctly different developmental processes, such as changes in patterning or tissue folding, yet standard univariate biometric approaches are usually unable to distinguish among alternative explanations. Here, we utilize geometric morphometrics to investigate the degree to which functional genetic manipulations known to affect the size of dung beetle horns also recapitulate the effect of horn shape allometry. We reasoned that the knockdown phenotypes of pathways governing relative growth should closely resemble shape variation induced by natural allometric variation. In contrast, we predicted that if genes primarily affect alternative developmental processes, knockdown effects should align poorly with shape allometry. We find that the knockdown effects of several genes (e.g., doublesex, Foxo) indeed closely aligned with shape allometry, indicating that their corresponding pathways may indeed function primarily in the regulation of relative trait growth. In contrast, other knockdown effects (e.g., Distal-less, dachs) failed to align with allometry, implicating these pathways in potentially scaling-independent processes. Our findings moderate the interpretation of studies focusing on trait length and highlight the usefulness of multivariate approaches to study allometry and phenotypic plasticity.
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