QTLs

QTL
  • 文章类型: Journal Article
    当前和先进的育种工具正在用于改善经济上重要的园艺作物,以满足消费者的需求和偏好。测序基因分型(GBS)是调查和分析不同品种遗传多样性的非常有用的工具。基于广泛的遗传背景,如单核苷酸多态性(SNP),与全基因组关联研究(GWAS)和QTL相比,GBS被认为是一种新技术,可促进与感兴趣性状可靠相关的定量性状基因座(QTL)区域的检测。近年来,GBS在育种者中越来越受欢迎,并且还用于黄瓜育种计划。黄瓜(C.sativusL.)是雌雄同株的,雌雄同体,其中一些是单性结实的物种。黄瓜是葫芦科中最经济、最重要的作物之一。为了远古的时间,黄瓜像其他葫芦一样在世界各地生产和消费。在很大程度上,栽培葫芦提供必需的矿物质和纤维对人体健康有益。因此,这篇综述描述了在黄瓜的各种研究中使用GBS及其与其他工具的结合所取得的进展的现状,例如使用GBS和单核苷酸多态性(SNP)标记,GBS和GWAS,还应用QTL和标记辅助选择(MAS)来显示和检测作物中的显性遗传结构复杂性状和染色体重排。黄瓜育种计划无疑受益于通过测序进行基因分型。使用GBS方法,研究发现了许多新的候选基因,可以控制包括脊柱颜色在内的各种特征,水果茎端颜色,和黄瓜品系的抗病性。
    Current and advanced breeding tools are being used to improve economically important horticultural crops to meet the consumers\' needs and preferences. Genotyping-by-sequencing (GBS) is an extremely useful tool in the investigation and analysis of the genetic diversity of different cultivars. Based on a broad range of genetic backgrounds like single nucleotide polymorphism (SNPs), GBS is known as a novel technique to facilitate the detection of quantitative trait loci (QTL) regions robustly linked with interested traits compared to genome-wide association study (GWAS) and QTL. GBS has gained popularity among breeders in recent years and it is also employed in cucumber breeding programs. Cucumbers (C. sativus L.) are monoecious, gynoecious and some of them are parthenocarpic species. Cucumber is one of the most economical and essential crops in the Cucurbitaceae family. For time immemorial, cucumber has been produced and consumed all over the world like other cucurbits. To a large extent, cultivated cucurbits are beneficial to human health for providing necessary minerals and fibers.Therefore, this review portrays the current status of advances made by using GBS and its combination with other tools in various studies of cucumber such as the use of GBS and single nucleotide polymorphism (SNP) markers, GBS and GWAS, also with QTL and marker-assisted selection (MAS) are applied to display and detect explicit genetic architecture complex traits in crops and chromosome rearrangements.Cucumber breeding programs have undoubtedly benefited from genotyping-by-sequencing. Using the GBS method, research discovered lots of new candidate genes that control various traits including spine color, fruit stalk-end color, and disease resistance in cucumber lines.
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  • 文章类型: Journal Article
    豆类蔬菜是碳水化合物的重要来源,维生素,矿物,以及促进健康的生物活性化学物质。由于消费者对其均衡饮食的认识不断提高,因此使用新鲜或加工蔬菜豆类的需求不断扩大。因此,保持蔬菜豆类的最佳产量极其重要。在这里,我们试图展示未充分开发的蔬菜豆类对食物供应的前景,可访问性,改善民生利用。到目前为止,与蔬菜豆类相比,研究注意力主要集中在豆类表现上。野生和栽培的蔬菜豆类在不同的栖息地中在形态上有所不同。这可能会让他们不太为人所知,利用不足,开发不足,并使它们在营养不良仍然存在的发展中国家成为有希望的潜在营养来源。需要研究工作来促进未充分利用的蔬菜豆类,改善它们的使用,以养活未来不断增长的人口。鉴于以上各点,在这里,我们讨论了具有巨大潜力的未开发蔬菜豆类;即,蔬菜木豆(Cajanuscajan),丛生豆(四角仙茅),有翼豆(果蝇四虫),dolichosbean(Lablabpurpureus),和cow豆(Vignaunguiculata),从而涵盖了与繁殖前等各个方面有关的进展,分子标记,数量性状基因座(QTL),基因组学,和基因工程。总的来说,这篇综述总结了与蔬菜豆类育种进展有关的信息,这将最终有助于确保发展中国家的粮食和营养安全。
    Vegetable legumes are an essential source of carbohydrates, vitamins, and minerals, along with health-promoting bioactive chemicals. The demand for the use of either fresh or processed vegetable legumes is continually expanding on account of the growing consumer awareness about their well-balanced diet. Therefore, sustaining optimum yields of vegetable legumes is extremely important. Here we seek to present d etails of prospects of underexploited vegetable legumes for food availability, accessibility, and improved livelihood utilization. So far research attention was mainly focused on pulse legumes\' performance as compared to vegetable legumes. Wild and cultivated vegetable legumes vary morphologically across diverse habitats. This could make them less known, underutilized, and underexploited, and make them a promising potential nutritional source in developing nations where malnutrition still exists. Research efforts are required to promote underexploited vegetable legumes, for improving their use to feed the ever-increasing population in the future. In view of all the above points, here we have discussed underexploited vegetable legumes with tremendous potential; namely, vegetable pigeon pea (Cajanus cajan), cluster bean (Cyamopsis tetragonoloba), winged bean (Psophocarpus tetragonolobus), dolichos bean (Lablab purpureus), and cowpea (Vigna unguiculata), thereby covering the progress related to various aspects such as pre-breeding, molecular markers, quantitative trait locus (QTLs), genomics, and genetic engineering. Overall, this review has summarized the information related to advancements in the breeding of vegetable legumes which will ultimately help in ensuring food and nutritional security in developing nations.
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  • 文章类型: Journal Article
    Durum wheat is the most relevant cereal for the whole of Mediterranean agriculture, due to its intrinsic adaptation to dryland and semi-arid environments and to its strong historical cultivation tradition. It is not only relevant for the primary production sector, but also for the food industry chains associated with it. In Mediterranean environments, wheat is mostly grown under rainfed conditions and the crop is frequently exposed to environmental stresses, with high temperatures and water scarcity especially during the grain filling period. For these reasons, and due to recurrent disease epidemics, Mediterranean wheat productivity often remains under potential levels. Many studies, using both linkage analysis (LA) and a genome-wide association study (GWAS), have identified the genomic regions controlling the grain yield and the associated markers that can be used for marker-assisted selection (MAS) programs. Here, we have summarized all the current studies identifying quantitative trait loci (QTLs) and/or candidate genes involved in the main traits linked to grain yield: kernel weight, number of kernels per spike and number of spikes per unit area.
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  • 文章类型: Journal Article
    气候变化,粮食短缺,缺水,人口增长是当今世界面临的一些威胁挑战。干旱胁迫(DS)对农作物构成了持续的挑战,并被认为是全球农业生产力的严重制约因素;预计其强度和严重程度在不久的将来会增加。豆类对DS表现出很高的敏感性,尤其是在植物和生殖阶段。它们大多生长在干旱地区,中等耐旱性,但严重的DS导致显著的生产损失。DS最突出的影响是发芽减少,发育迟缓,对光合装置的严重损害,净光合作用减少,和营养吸收的减少。为了遏制豆科植物中DS的灾难性影响,必须了解它的影响,机制,以及干旱可持续管理的农艺和遗传基础。这篇综述强调了DS对豆类的影响,机制,并提出相应的管理方法来缓解水资源紧张的严重程度。在我们的讨论中,我们概述了水分胁迫对生理方面的影响(如发芽,光合作用,水和养分吸收),生长参数和产量。此外,机制,各种管理策略,例如,农艺实践(种植时间和几何形状,营养素管理),植物生长促进根瘤菌和丛枝菌根真菌接种,数量性状基因座(QTL),功能基因组学和高级策略(CRISPR-Cas9)也被严格讨论。我们建议需要整合多种方法,例如农艺和生物技术策略以及先进的基因组编辑工具,以开发耐旱的豆类品种。
    Climate change, food shortage, water scarcity, and population growth are some of the threatening challenges being faced in today\'s world. Drought stress (DS) poses a constant challenge for agricultural crops and has been considered a severe constraint for global agricultural productivity; its intensity and severity are predicted to increase in the near future. Legumes demonstrate high sensitivity to DS, especially at vegetative and reproductive stages. They are mostly grown in the dry areas and are moderately drought tolerant, but severe DS leads to remarkable production losses. The most prominent effects of DS are reduced germination, stunted growth, serious damage to the photosynthetic apparatus, decrease in net photosynthesis, and a reduction in nutrient uptake. To curb the catastrophic effect of DS in legumes, it is imperative to understand its effects, mechanisms, and the agronomic and genetic basis of drought for sustainable management. This review highlights the impact of DS on legumes, mechanisms, and proposes appropriate management approaches to alleviate the severity of water stress. In our discussion, we outline the influence of water stress on physiological aspects (such as germination, photosynthesis, water and nutrient uptake), growth parameters and yield. Additionally, mechanisms, various management strategies, for instance, agronomic practices (planting time and geometry, nutrient management), plant growth-promoting Rhizobacteria and arbuscular mycorrhizal fungal inoculation, quantitative trait loci (QTLs), functional genomics and advanced strategies (CRISPR-Cas9) are also critically discussed. We propose that the integration of several approaches such as agronomic and biotechnological strategies as well as advanced genome editing tools is needed to develop drought-tolerant legume cultivars.
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  • 文章类型: Journal Article
    Turbot (Scophthalmus maximus) is a very valuable fish species both in Europe and China. The culture of this flatfish is well-established but several bacteria, viruses, and parasites can produce mortality or morbidity episodes in turbot farms. Viral Hemorrhagic Septicemia Virus (VHSV) is one of the most threatening pathogens affecting turbot, because neither vaccines nor treatments are commercially available. Although the mortality in the turbot farms is relatively low, when this virus is detected all the stock have to be destroyed. The main goals that need to be improved in order to reduce the incidence of this disease is to know what are the strategies or molecules the host use to fight the virus and, in consequence, try to potentiate this response using different ways. Certain molecules can be selected as potential antiviral treatments because of their high protective effect against VHSV. On the other hand, the use of resistance markers for selective breeding is one of the most attractive approaches. This review englobes all the investigation concerning the immune interaction between turbot and VHSV, which until the last years was very scarce, and the knowledge about VHSV-resistance markers in turbot. Nowadays, the availability of abundant transcriptomic information and the recent sequencing of the turbot genome open the door to a more exhaustive and profuse investigation in these areas.
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