Genetic Heterogeneity

遗传异质性
  • 文章类型: Systematic Review
    背景:预计骨科手术每年都会增加,必须了解患者遗传构成与术后疼痛水平之间的相关性。
    方法:我们使用PubMed和Cochrane数据库根据系统评价和荟萃分析指南的首选报告项目进行了系统文献综述。最初总共选择了299篇文章,在标题和摘要评论之后,剩下20篇文章,并在全文审查时选择了九篇文章。
    结果:确定的遗传风险因素包括5HT2A基因单核苷酸多态性的A等位基因,ADRB2基因的AA基因型,IL6基因的CG基因型,NTRK1基因的基因型CT和TT,OPRM基因的基因型AA和GA,以及COMT基因的AA和GA基因型。综述中的其他研究讨论了COMT基因的其他变体的统计学意义。
    结论:已经对患者异质性及其与患者疼痛程度的关系进行了遗传关联研究,但是需要收集更多的数据来了解基于基因组序列对患者进行分层的临床应用。
    BACKGROUND: Orthopedic surgical procedures are expected to increase annually, making it imperative to understand the correlations between patient genetic makeup and post-operative pain levels.
    METHODS: We performed a systematic literature review using PubMed and Cochrane databases in accordance with Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. A total of 299 articles were initially selected, 20 articles remained after title and abstract review, and nine articles were selected for inclusion upon full text review.
    RESULTS: Genetic risk factors identified included the A allele of the 5HT2A gene single nucleotide polymorphism, the AA genotype of the ADRB2 gene, the CG genotype of the IL6 gene, the genotypes CT and TT of the NTRK1 gene, genotypes AA and GA of the OPRM gene, and the AA and GA genotypes of the COMT gene. Additional studies in the review discuss statistical significance of other variants of the COMT gene.
    CONCLUSIONS: There have been genetic association studies performed on the patient heterogeneity and its relationship on patient pain levels, but more data need to be collected to understand the clinical utility of stratifying patients based on genomic sequence.
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  • 文章类型: Review
    背景:偶尔报道了RNF216相关疾病的病例。然而,该疾病的临床和遗传谱尚未得到充分研究。
    方法:我们在我们机构中确定了一个具有新的致病RNF216变异体的个体,并在以前的报告中回顾了所有具有致病RNF216变异体的个体。分析并总结了所有描述个体的临床和遗传特征。
    结果:鉴定了来自17个家族的24个个体,这些个体具有致病的RNF216变异体。神经系统症状发作的平均年龄为29.2岁(范围18-49岁)。共济失调(57%)是30岁以下人群中最常见的初始症状,而舞蹈症(63%)是30岁以上人群中最常见的初始症状。超过90%的个体在整个疾病中表现为认知障碍和低促性腺激素性腺功能减退。白质病变(96%)和小脑萎缩(92%)是最常见的影像学发现。在RNF216中检测到20种致病变异。12个(71%)家族的变异是以单基因隐性模式遗传的,而5(29%)中的变体通过与其他基因中的变体一起以双基因模式遗传。大多数RNF216变体(85%)导致氨基酸变化或RING'(RBR)结构域或C末端延伸之间的RING截短。
    结论:RNF216相关疾病是一种以小脑共济失调为特征的遗传性神经内分泌疾病,舞蹈病,认知障碍和低促性腺激素性性腺功能减退。RNF216相关疾病患者中的大多数致病变异影响RNF216的RBR结构域或C末端延伸。
    BACKGROUND: Cases of RNF216-related disorder have been reported sporadically. However, the clinical and genetic spectrum of this disorder has not been fully studied.
    METHODS: We identified an individual with a novel causative RNF216 variant in our institution and reviewed all individuals with causative RNF216 variants in previous reports. The clinical and genetic features of all the described individuals were analysed and summarised.
    RESULTS: Twenty-four individuals from 17 families with causative RNF216 variants were identified. The mean age at the onset of neurological symptoms was 29.2 years (range 18-49 years). Ataxia (57%) was the most frequent initial symptoms in individuals under 30 years old, while chorea (63%) was the most frequent initial symptom in individuals over 30 years old. Over 90% of individuals presented with cognitive impairment and hypogonadotropic hypogonadism throughout the disease. White matter lesions (96%) and cerebellar atrophy (92%) were the most common imaging findings. Twenty pathogenic variants in RNF216 were detected. The variants in 12 (71%) families were inherited in a monogenic recessive pattern, whereas the variants in 5 (29%) were inherited in a digenic pattern by acting with variants in other genes. The majority of the RNF216 variants (85%) resulted in amino acid changes or the truncation of the \'RING between RING\' (RBR) domain or C-terminal extension.
    CONCLUSIONS: RNF216-related disorder is an inherited neuroendocrine disease characterised by cerebellar ataxia, chorea, cognitive impairment and hypogonadotropic hypogonadism. Most causative variants in patients with RNF216-related disorder influence the RBR domain or C-terminal extension of RNF216.
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  • 文章类型: Journal Article
    这篇综合综述探讨了子宫内膜异位症的遗传贡献及其对改进诊断技术的潜在影响。该综述首先定义了子宫内膜异位症并讨论了其患病率,强调需要更深入地了解病情的遗传基础。它强调了最近的全基因组关联研究(GWAS),这些研究已经确定了与子宫内膜异位症相关的特定遗传变异。揭示所涉及的分子途径和机制。这篇综述涉及不同人群和种族的遗传异质性,强调在诊断方法中考虑群体特异性标志物的重要性。它探讨了遗传见解的诊断意义,包括潜在的基因标记用于精确和早期检测,以及风险预测。该综述还深入研究了遗传信息与临床参数和影像学发现的整合,以及探索多组学方法以全面了解子宫内膜异位症。它讨论了遗传和表观遗传生物标志物的最新研究,他们作为诊断工具的潜力,以及需要在独立队列中进行验证。这篇综述强调了新基因组技术的影响,比如下一代测序,提高诊断准确性和个性化管理。它确定了将遗传发现转化为诊断工具的挑战和未来方向,并强调了遗传见解在子宫内膜异位症诊断中的转化潜力。这篇综述为未来的研究提供了路线图,并强调了遗传见解在提高子宫内膜异位症患者的诊断精度和个性化护理方面的重要性。
    This comprehensive review explores the genetic contributions to endometriosis and their potential impact on improving diagnostic techniques. The review begins by defining endometriosis and discussing its prevalence, emphasizing the need for a deeper understanding of the genetic basis of the condition. It highlights recent genome-wide association studies (GWAS) that have identified specific genetic variants associated with endometriosis, shedding light on the molecular pathways and mechanisms involved. The review addresses genetic heterogeneity across different populations and ethnicities, emphasizing the importance of considering population-specific markers in diagnostic approaches. It explores the diagnostic implications of genetic insights, including the potential use of genetic markers for precise and early detection, as well as risk prediction. The review also delves into the integration of genetic information with clinical parameters and imaging findings, and the exploration of multi-omics approaches for a comprehensive understanding of endometriosis. It discusses recent studies on genetic and epigenetic biomarkers, their potential as diagnostic tools, and the need for validation in independent cohorts. The review highlights the impact of new genomic technologies, such as next-generation sequencing, in improving diagnostic accuracy and personalized management. It identifies the challenges and future directions in translating genetic findings into diagnostic tools and emphasizes the transformative potential of genetic insights in endometriosis diagnosis. This review provides a roadmap for future research and underscores the significance of genetic insights in improving diagnostic precision and personalized care for individuals with endometriosis.
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  • 文章类型: Journal Article
    单细胞测序已成为生物学广泛领域中最常用的技术之一。它使研究人员能够在整个组织的细胞水平上研究整个转录组,这为未来的诊断和治疗中的基础和应用研究释放了许多潜力。这里,我们回顾了单细胞RNA测序的影响,作为突出的单细胞技术,胰腺生物学和癌症。由于过去几年的技术进步,我们讨论了有关胰腺生理学和病理生理学的最新发现。使用单细胞RNA测序,研究人员已经能够发现健康细胞类型的细胞异质性,以及胰腺癌组织。我们将讨论使用单细胞RNA测序研究的胰腺癌微环境中的新免疫靶标和新的分子机制。范围不仅限于癌组织,我们涵盖了新的发展,进化,生理,以及最近在胰腺组织中也取得的异源性见解。我们涵盖了来自单细胞RNA测序数据的所有生物学见解,讨论相应的利弊,最后,总结未来的研究如何利用单细胞分析胰腺生物学更好地发展。
    Single-cell sequencing has become one of the most used techniques across the wide field of biology. It has enabled researchers to investigate the whole transcriptome at the cellular level across tissues, which unlocks numerous potentials for basic and applied studies in future diagnosis and therapy. Here, we review the impact of single-cell RNA sequencing, as the prominent single-cell technique, in pancreatic biology and cancer. We discuss the most recent findings about pancreatic physiology and pathophysiology owing to this technological advancement in the past few years. Using single-cell RNA sequencing, researchers have been able to discover cellular heterogeneity across healthy cell types, as well as cancer tissues of the pancreas. We will discuss the new immunological targets and new molecular mechanisms of progression in the microenvironment of pancreatic cancer studied using single-cell RNA sequencing. The scope is not limited to cancer tissues, and we cover novel developmental, evolutionary, physiological, and heterogenic insights that have also been achieved recently for pancreatic tissues. We cover all biological insights derived from the single-cell RNA sequencing data, discuss the corresponding pros and cons, and finally, conclude how future research can move better by utilizing single-cell analysis for pancreatic biology.
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  • 文章类型: Review
    尽管有口服疫苗,人类轮状病毒仍然是全球5岁以下儿童急性胃肠炎的主要病因。轮状病毒的遗传不稳定性和从不同的G型和P型形成不同组合的能力重塑了新兴菌株的抗原景观,这些菌株通常与疫苗菌株具有有限的抗原身份或没有抗原身份。证据也表明,抗原性不同的新型或稀有菌株的选择及其在人群中的成功传播引起了人们对破坏疫苗接种计划有效性的担忧。
    我们回顾了与轮状病毒遗传和抗原异质性相关的现有知识,遗传多样性和进化的机制,以及基因变化对疫苗接种的影响。
    轮状病毒分段基因组的遗传变化可以改变病毒壳上的抗原景观,并进一步促进完全接种疫苗的人群中的病毒适应性。在这种背景下,通过在全球范围内持续并加强对变异体的密切监测,以确定与疾病动态相关的任何变化,可以更好地预测新轮状病毒长期出现的潜在风险.
    Human rotavirus remains a major etiology of acute gastroenteritis among under 5-year children worldwide despite the availability of oral vaccines. The genetic instability of rotavirus and the ability to form different combinations from the different G- and P-types reshapes the antigenic landscape of emerging strains which often display limited or no antigen identities with the vaccine strain. As evidence also suggests, the selection of the antigenically distinct novel or rare strains and their successful spread in the human population has raised concerns regarding undermining the effectiveness of vaccination programs.
    We review aspects related to current knowledge about genetic and antigenic heterogeneity of rotavirus, the mechanism of genetic diversity and evolution, and the implication of genetic change on vaccination.
    Genetic changes in the segmented genome of rotavirus can alter the antigenic landscape on the virion capsid and further promote viral fitness in a fully vaccinated population. Against this background, the potential risk of the appearance of new rotavirus strains over the long term would be better predicted by a continued and increased close monitoring of the variants across the globe to identify any change associated with disease dynamics.
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  • 文章类型: Journal Article
    越来越多的证据表明,帕金森病(PD)致病基因的变异对PD和PD前期睡眠障碍的发展有贡献。在这篇文章中,我们的目的是研究遗传学在PD患者和无症状携带者的睡眠障碍中的作用。基于MEDLINE对观察性研究进行了系统评价和荟萃分析,EMBASE和PsychINFO数据库。通过比值比(OR)和标准平均差(SMD)计算合并效应大小。选择了40项研究进行定量分析,包括对葡萄糖脑苷脂酶(GBA)的17项研究,25个富含亮氨酸的重复激酶2(LRRK2)和7个在parkin(PRKN)基因上的研究,对α-突触核蛋白基因(SNCA)的3项研究进行了定性分析。携带GBA变异体的PD患者发生快速眼动行为障碍(RBD)的风险明显更高(OR,1.82)和更高的RBD筛查问卷得分(SMD,0.33)。GBA变异的无症状携带者在随访期间RBD的严重程度更高。与没有LRRK2G2019S的患者相比,携带LRRK2G2019S变异体的PD患者RBD的风险和严重程度较低。GBA的变体,LRRK2和PRKN不会增加或降低PD患者白天过度嗜睡和不宁腿综合征的风险和严重程度。我们的研究结果表明,遗传异质性在睡眠障碍的发展中起作用。主要是RBD,在PD和PD的前驱阶段。
    A growing amount of evidence has indicated contributions of variants in causative genes of Parkinson\'s disease (PD) to the development of sleep disturbance in PD and prodromal PD stages. In this article, we aimed to investigate the role of genetics in sleep disorders in PD patients and asymptomatic carriers at prodromal stage of PD. A systematic review and meta-analysis of observational studies was conducted based on the MEDLINE, EMBASE and PsychINFO databases. A pooled effect size was calculated by odds ratio (OR) and standard mean difference (SMD). Forty studies were selected for quantitative analysis, including 17 studies on glucocerebrosidase (GBA), 25 studies on Leucine-rich repeat kinase 2 (LRRK2) and 7 on parkin (PRKN) genes, and 3 studies on alpha-synuclein gene (SNCA) were used for qualitative analysis. Patients with PD carrying GBA variants had a significantly higher risk for rapid-eye-movement behavior disorders (RBD) (OR, 1.82) and higher RBD Screening Questionnaire scores (SMD, 0.33). Asymptomatic carriers of GBA variants had higher severity of RBD during follow-up. Patients with PD carrying the LRRK2 G2019S variant had lower risk and severity of RBD compared with those without LRRK2 G2019S. Variants of GBA, LRRK2 and PRKN did not increase or decrease the risk and severity of excessive daytime sleepiness and restless legs syndrome in PD. Our findings suggest that the genetic heterogeneity plays a role in the development of sleep disorders, mainly RBD, in PD and the prodromal stage of PD.
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  • 文章类型: Systematic Review
    背景:Silver-Russell综合征(SRS)是一种涉及极端生长障碍的发育障碍,特征性面部特征和潜在的遗传异质性。由于SRS的临床异质性使诊断成为一项具有挑战性的任务,SRS的全球发病率可能在1:30,000到1:100,000之间。虽然各种染色体,遗传,表观遗传突变与SRS相关,只有一半的病例确定了原因。
    方法:为了更好地了解SRS的临床表现和引起SRS的突变/突变,我们使用各种科学数据库(PROSPERO方案注册CRD42021273211)中适当的关键词对文献进行了系统回顾.SRS的临床特征已根据特定的遗传亚型进行了编辑和呈现。已经尝试了解复发风险和模型生物在理解SRS病理的分子机制中的作用。治疗,通过对选定文献的分析,对受影响患者的管理策略进行分析。
    结果:选择了156篇文章来了解SRS的临床和分子异质性。有关详细临床特征的信息仅适用于228例患者,据观察,在11p15区域甲基化缺陷的病例中,身体不对称和相对大头畸形最为普遍。在大约38%的案例中,涉及ICR中的甲基化缺陷或11p15区域的基因组突变。母亲7号染色体单亲染色体(mUPD7)约占SRS病例的7%,很少,已记录了其他常染色体(11、14、16和20条染色体)的单亲二体性。一半病例的突变尚未确定。涉及小鼠作为实验动物的研究有助于理解潜在的分子机制。由于该综合征的临床表现差异很大,治疗需要通过多学科的努力个性化。
    结论:SRS是一种临床和遗传异质性疾病,大多数病例与11p15区域的突变和7号染色体的母体二体性有关。复发风险因分子亚型而异。以小鼠为模型生物的研究有助于理解导致该综合征特征性临床表现的潜在分子机制。由于临床表现的不同,管理策略通常需要个性化。
    BACKGROUND: Silver-Russell syndrome (SRS) is a developmental disorder involving extreme growth failure, characteristic facial features and underlying genetic heterogeneity. As the clinical heterogeneity of SRS makes diagnosis a challenging task, the worldwide incidence of SRS could vary from 1:30,000 to 1:100,000. Although various chromosomal, genetic, and epigenetic mutations have been linked with SRS, the cause had only been identified in half of the cases.
    METHODS: To have a better understanding of the SRS clinical presentation and mutation/ epimutation responsible for SRS, a systematic review of the literature was carried out using appropriate keywords in various scientific databases (PROSPERO protocol registration CRD42021273211). Clinical features of SRS have been compiled and presented corresponding to the specific genetic subtype. An attempt has been made to understand the recurrence risk and the role of model organisms in understanding the molecular mechanisms of SRS pathology, treatment, and management strategies of the affected patients through the analysis of selected literature.
    RESULTS: 156 articles were selected to understand the clinical and molecular heterogeneity of SRS. Information about detailed clinical features was available for 228 patients only, and it was observed that body asymmetry and relative macrocephaly were most prevalent in cases with methylation defects of the 11p15 region. In about 38% of cases, methylation defects in ICRs or genomic mutations at the 11p15 region have been implicated. Maternal uniparental disomy of chromosome 7 (mUPD7) accounts for about 7% of SRS cases, and rarely, uniparental disomy of other autosomes (11, 14, 16, and 20 chromosomes) has been documented. Mutation in half of the cases is yet to be identified. Studies involving mice as experimental animals have been helpful in understanding the underlying molecular mechanism. As the clinical presentation of the syndrome varies a lot, treatment needs to be individualized with multidisciplinary effort.
    CONCLUSIONS: SRS is a clinically and genetically heterogeneous disorder, with most of the cases being implicated with a mutation in the 11p15 region and maternal disomy of chromosome 7. Recurrence risk varies according to the molecular subtype. Studies with mice as a model organism have been useful in understanding the underlying molecular mechanism leading to the characteristic clinical presentation of the syndrome. Management strategies often need to be individualized due to varied clinical presentations.
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  • 文章类型: Journal Article
    眼耳椎骨频谱(OAVS)或Goldenhar综合征是由于胚胎发育过程中第一和第二分支弓衍生物的异常发育,其特征是与耳廓相关的半面微缩肌,眼和脊椎畸形。该光谱的临床和遗传异质性具有不完全的外显率和可变的表达能力,使其分子诊断变得困难。到目前为止,只有少数复发性CNV和基因被鉴定为这种复杂疾病的病因。还假设了产前环境因素。然而,大多数患者仍然没有病因。在这次审查中,我们的目标是更新临床诊断标准,描述遗传和非遗传病因,动物模型以及新的诊断工具和手术管理,以帮助和改善这些患者及其家人的临床护理和遗传咨询。
    Oculo-auriculo-vertebral spectrum (OAVS) or Goldenhar syndrome is due to an abnormal development of first and second branchial arches derivatives during embryogenesis and is characterised by hemifacial microsomia associated with auricular, ocular and vertebral malformations. The clinical and genetic heterogeneity of this spectrum with incomplete penetrance and variable expressivity, render its molecular diagnosis difficult. Only a few recurrent CNVs and genes have been identified as causatives in this complex disorder so far. Prenatal environmental causal factors have also been hypothesised. However, most of the patients remain without aetiology. In this review, we aim at updating clinical diagnostic criteria and describing genetic and non-genetic aetiologies, animal models as well as novel diagnostic tools and surgical management, in order to help and improve clinical care and genetic counselling of these patients and their families.
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  • 文章类型: Journal Article
    对精神疾病遗传病因异质性的更好理解可能有助于我们(a)通过确定其上游遗传起源来分离神经生理学“最终共同途径”,以及(b)促进对疾病表型变异的表征。这篇综述旨在确定精神病学文献中现有的遗传异质性测量,并对其机制进行概念性综述。局限性,和假设。在Scopus数据库中搜索了量化遗传异质性或精神病学表型与人类遗传数据相关性的研究。包括90项研究。87份报告量化了遗传相关性,五种应用基因组结构方程建模,三个评估了在一个或多个基因座处偏离Hardy-Weinberg平衡的情况,两个应用了一种称为MiXeR的新方法。我们没有发现在大量标记物中严格测量遗传病因异质性的研究。开发此类方法可能有助于更好地表征精神病理学的生物多样性。
    An improved understanding of genetic etiological heterogeneity in a psychiatric condition may help us (a) isolate a neurophysiological \'final common pathway\' by identifying its upstream genetic origins and (b) facilitate characterization of the condition\'s phenotypic variation. This review aims to identify existing genetic heterogeneity measurements in the psychiatric literature and provides a conceptual review of their mechanisms, limitations, and assumptions. The Scopus database was searched for studies that quantified genetic heterogeneity or correlation of psychiatric phenotypes with human genetic data. Ninety studies were included. Eighty-seven reports quantified genetic correlation, five applied genomic structural equation modelling, three evaluated departure from the Hardy-Weinberg equilibrium at one or more loci, and two applied a novel approach known as MiXeR. We found no study that rigorously measured genetic etiological heterogeneity across a large number of markers. Developing such approaches may help better characterize the biological diversity of psychopathology.
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  • 文章类型: Journal Article
    脑膜瘤代表一组表型和遗传上不同的肿瘤,它们的行为方式通常不能简单地用其病理等级来解释。脑膜瘤的遗传景观已成为研究的目标,因为已发现肿瘤基因组学会影响肿瘤的位置,复发风险,和恶性潜力。此外,靶向治疗正在开发中,未来可能为患者提供基于肿瘤内遗传畸变的个性化化疗.这篇综述集中在所有级别的脑膜瘤中发现的最常见的基因突变,强调对肿瘤位置和临床相关肿瘤特征的影响。在低级别和高级别肿瘤的背景下,总结了NF-2和非NF-2基因突变家族,接下来是关于脑膜瘤位置和表型异质性的遗传和胚胎学基础的全面讨论。最后,对目前使用和研究中的基于肿瘤基因组学的靶向治疗进行了综述,并提出了未来的研究途径。脑膜瘤基因组学领域对未来脑膜瘤的治疗方式具有广泛的意义,并且正在逐渐改变临床医生处理这种多样化肿瘤的方式。
    Meningiomas represent a phenotypically and genetically diverse group of tumors which often behave in ways that are not simply explained by their pathologic grade. The genetic landscape of meningiomas has become a target of investigation as tumor genomics have been found to impact tumor location, recurrence risk, and malignant potential. Additionally, targeted therapies are being developed that in the future may provide patients with personalized chemotherapy based on the genetic aberrations within their tumor. This review focuses on the most common genetic mutations found in meningiomas of all grades, with an emphasis on the impact on tumor location and clinically relevant tumor characteristics. NF-2 and the non-NF-2 family of genetic mutations are summarized in the context of low-grade and high-grade tumors, followed by a comprehensive discussion regarding the genetic and embryologic basis for meningioma location and phenotypic heterogeneity. Finally, targeted therapies based on tumor genomics currently in use and under investigation are reviewed and future avenues for research are suggested. The field of meningioma genomics has broad implications on the way meningiomas will be treated in the future, and is gradually shifting the way clinicians approach this diverse group of tumors.
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