Electron Spin Resonance Spectroscopy

电子自旋共振谱
  • 文章类型: Journal Article
    目的:评估病例报告作为不常见疾病和非典型表现的诊断错误研究来源的有用性。
    背景:我们回顾了563例诊断错误的病例报告。最终诊断的共性根据文章中的描述进行分类,Orphanet,或有关可用参考文献的流行病学数据;根据文章中的描述和医师研究人员的判断,对呈现的典型性进行了分类。诊断错误评估与研究(DEER),可靠诊断挑战(RDC),和通用诊断陷阱(GDP)分类用于评估导致诊断错误的因素。
    排除不能分类的三种情况,560例分为四类:常见疾病的典型表现(60,10.7%),常见疾病的非典型表现(35,6.2%),罕见疾病的典型表现(276,49.3%),和不常见疾病的非典型表现(189,33.8%)。在四个类别中,最重要的DEER分类法是“考虑诊断失败/延迟”,而最重要的RDC和GDP分类因类别而异。病例报告可以成为研究具有或不具有非典型表现的罕见疾病的诊断错误的有用数据源。
    OBJECTIVE: To assess the usefulness of case reports as sources for research on diagnostic errors in uncommon diseases and atypical presentations.
    BACKGROUND: We reviewed 563 case reports of diagnostic error. The commonality of the final diagnoses was classified based on the description in the articles, Orphanet, or epidemiological data on available references; the typicality of presentation was classified based on the description in the articles and the judgment of the physician researchers. Diagnosis Error Evaluation and Research (DEER), Reliable Diagnosis Challenges (RDC), and Generic Diagnostic Pitfalls (GDP) taxonomies were used to assess the factors contributing to diagnostic errors.
    UNASSIGNED: Excluding three cases in that commonality could not be classified, 560 cases were classified into four categories: typical presentations of common diseases (60, 10.7 %), atypical presentations of common diseases (35, 6.2 %), typical presentations of uncommon diseases (276, 49.3 %), and atypical presentations of uncommon diseases (189, 33.8 %). The most important DEER taxonomy was \"Failure/delay in considering the diagnosis\" among the four categories, whereas the most important RDC and GDP taxonomies varied with the categories. Case reports can be a useful data source for research on the diagnostic errors of uncommon diseases with or without atypical presentations.
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  • 文章类型: Case Reports
    我们在此报告了三种杂环类姜黄素配体及其与镁和铜的均配位金属配合物的合成和表征。因此,N-甲基-2-吡咯甲醛,呋喃-2-甲醛,和2-噻吩甲醛与2,4-戊二酮-三氧化硼络合物缩合。报道了第一个N-甲基-2-吡咯类姜黄素及其Mg(II)配合物。通过红外光谱(IR)对所有类姜黄素配体及其相应的金属配合物进行了表征,液态核磁共振(LSNMR),电子顺磁共振(EPR),质谱(MS)和单晶X射线衍射(SCXRD)。噻吩Curc-Cu(9)构成了“构象异配位”复合物的第一种情况。报道了源自超分子描述的噻吩Curc配体的独特六峰星形排列。FuranCurc-Mg(5)和噻吩-Cu(9)的金属配合物具有良好的抗氧化作用(IC50=11.26±1.73和10.30±0.59μM),分别比它们的游离配体高三倍和两倍。此外,(5)对结肠癌腺癌细胞株HCT-15显示出显著的细胞毒性,与顺铂相当,在体外对健康的猴肾细胞系(COS-7)具有可忽略的毒性作用。
    We report herein the synthesis and characterization of three heterocyclic curcuminoid ligands and their homoleptic metal complexes with magnesium and copper. Thus, N-methyl-2-pyrrolecarboxaldehyde, Furan-2-carboxaldehyde, and 2-Thiophenecarboxaldehyde were condensed with 2,4-pentanedione-boron trioxide complex. The first N-methyl-2-pyrrole curcuminoid and its Mg(II) complex are reported. All curcuminoid ligands and their corresponding metal complexes were characterized by infrared spectroscopy (IR), liquid state nuclear magnetic resonance (LSNMR), electron paramagnetic resonance (EPR), mass spectrometry (MS) and single crystal X-ray diffraction (SCXRD). The ThiopheneCurc-Cu (9) constitutes the first case of a \"conformationally-heteroleptic\" complex. The unique six-peaks star arrangement for the ThiopheneCurc ligand derived from the supramolecular description is reported. The metal complexes of FuranCurc-Mg (5) and ThiopheneCurc-Cu (9) have a good antioxidant effect (IC50 = 11.26 ± 1.73 and 10.30 ± 0.59 μM), three and two times higher than their free ligands respectively. Additionally, (5) shows remarkable cytotoxicity against colon cancer adenocarcinoma cell line HCT-15, comparable to that of cisplatin, with a negligible toxic effect in vitro towards a healthy monkey kidney cell line (COS-7).
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  • 文章类型: Journal Article
    弛豫诱导的偶极调制增强(RIDME)时间迹线形状揭示了均匀玻璃质样品中质子浓度的线性缩放。我们在这里描述了对此类数据的基于近似扩散方程的分析,它仅使用两个拟合参数,并允许具有良好准确性的全局数据拟合。按建筑,该方法应该是转移到其他脉冲EPR实验与纵向混合块(S)存在。这两个拟合参数似乎对玻璃基质的类型敏感,因此可以用于样品表征。估计表明,所提出的技术应在90%的基质氘代水平下对距电子自旋最大3nm的质子敏感。我们建议可以基于这种分子间超精细(ih-)RIDME技术开发一种结构方法,这将是有用的,例如,在结构生物学或动态核极化实验中。
    Relaxation-induced dipolar modulation enhancement (RIDME) time trace shapes reveal linear scaling with the proton concentration in homogeneous glassy samples. We describe here an approximate diffusion equation-based analysis of such data, which uses only two fit parameters and allows for global data fitting with good accuracy. By construction, the approach should be transferable to other pulse EPR experiments with longitudinal mixing block(s) present. The two fit parameters appear to be sensitive to the type of the glassy matrix and can be thus used for sample characterisation. The estimates suggest that the presented technique should be sensitive to protons at distances up to 3 nm from the electron spin at a 90% matrix deuteration level. We propose that a structural method might be developed based on such an intermolecular hyperfine (ih-)RIDME technique, which would be useful, for instance, in structural biology or dynamic nuclear polarisation experiments.
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  • 文章类型: Review
    测试结构化电子健康记录(EHR)病例审查过程,以识别急性护理中的诊断错误(DE)和诊断过程失败(DPF)。
    我们采用了经过验证的工具(更安全的Dx,诊断错误评估研究[DEER]分类法),以评估医院相遇期间的诊断过程,并对13种假定的电子触发因素进行分类。我们创建了两个测试队列,包括所有可预防病例(n=28)和相同数量的随机抽样不可预防病例(n=28),来自365名成年普通药物患者,这些患者过期并接受了我们机构的死亡率病例审查过程。在排除住院时间超过一个月的病人后,每例病例均由两名接受过我们流程培训的盲症临床医师和一个专家小组进行审查.评估者间的可靠性。我们比较了两个队列中DE导致死亡的频率,以及每个队列中DE阳性和阴性病例的平均DPF和电子触发因素。
    27例(96.4%)可预防和24例(85.7%)不可预防的病例接受了我们的审查程序。评估者之间的可靠性在个体审稿人之间中等(科恩的kappa0.41),而在专家小组中基本可靠(科恩的kappa0.74)。与不可预防队列相比,可预防队列的DE导致死亡的频率明显更高(56%vs.17%,或6.25[1.68,23.27],p<0.01)。在每个队列中,与DE阴性病例相比,DE阳性的平均DPF和电子触发因素显着升高,而不是显着升高。分别。
    使用我们的结构化EHR案例审查流程,我们观察到最终共识和专家小组审查之间的实质性共识。在机构指定的可预防和不可预防的病例中确定了导致与DPF相关的死亡的DEs。虽然电子触发器可能有助于区分DE阳性和DE阴性情况,需要更大规模的研究进行验证。我们的方法有可能增加关于DE监测的机构死亡率病例审查过程。
    To test a structured electronic health record (EHR) case review process to identify diagnostic errors (DE) and diagnostic process failures (DPFs) in acute care.
    We adapted validated tools (Safer Dx, Diagnostic Error Evaluation Research [DEER] Taxonomy) to assess the diagnostic process during the hospital encounter and categorized 13 postulated e-triggers. We created two test cohorts of all preventable cases (n=28) and an equal number of randomly sampled non-preventable cases (n=28) from 365 adult general medicine patients who expired and underwent our institution\'s mortality case review process. After excluding patients with a length of stay of more than one month, each case was reviewed by two blinded clinicians trained in our process and by an expert panel. Inter-rater reliability was assessed. We compared the frequency of DE contributing to death in both cohorts, as well as mean DPFs and e-triggers for DE positive and negative cases within each cohort.
    Twenty-seven (96.4%) preventable and 24 (85.7%) non-preventable cases underwent our review process. Inter-rater reliability was moderate between individual reviewers (Cohen\'s kappa 0.41) and substantial with the expert panel (Cohen\'s kappa 0.74). The frequency of DE contributing to death was significantly higher for the preventable compared to the non-preventable cohort (56% vs. 17%, OR 6.25 [1.68, 23.27], p<0.01). Mean DPFs and e-triggers were significantly and non-significantly higher for DE positive compared to DE negative cases in each cohort, respectively.
    We observed substantial agreement among final consensus and expert panel reviews using our structured EHR case review process. DEs contributing to death associated with DPFs were identified in institutionally designated preventable and non-preventable cases. While e-triggers may be useful for discriminating DE positive from DE negative cases, larger studies are required for validation. Our approach has potential to augment institutional mortality case review processes with respect to DE surveillance.
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  • 文章类型: Journal Article
    已经开发了一种EPR光谱仪,可以将其调谐到大约0.1-15GHz范围内的许多频率。已经在氟化亚铁肌红蛋白(MbF)和氰化亚铁肌红蛋白(MbCN)上测试了适用性。MbF具有高自旋(S=5/2)光谱,具有19F超精细分裂,仅在沿血红素法线的X波段中分辨。低频EPR也解决血红素平面中的分裂。作为频率函数的线宽测量为分析g应变方面的不均匀加宽提供了基础,零场分布,未解决的超精细分裂和偶极相互作用。发现g张量中不存在菱形。MbCN(S=1/2)具有高度各向异性的低自旋(HALS)光谱,无法在X波段明确确定gx。低频EPR允许测量完整的频谱并确定g张量。
    An EPR spectrometer has been developed that can be tuned to many frequencies in the range of ca 0.1-15 GHz. Applicability has been tested on ferrimyoglobin fluoride (MbF) and ferrimyoglobin cyanide (MbCN). MbF has a high-spin (S = 5/2) spectrum with 19F superhyperfine splitting that is only resolved in X-band along the heme normal. Low-frequency EPR also resolves the splitting in the heme plane. Measurement of linewidth as a function of frequency provides the basis for an analysis of inhomogeneous broadening in terms of g-strain, zero-field distribution, unresolved superhyperfine splittings and dipolar interaction. Rhombicity in the g tensor is found to be absent. MbCN (S = 1/2) has a highly anisotropic low spin (HALS) spectrum for which gx cannot be determined unequivocally in X-band. Low-frequency EPR allows for measurement of the complete spectrum and determination of the g-tensor.
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  • 文章类型: Journal Article
    在冷冻有机溶剂和蛋白质环境中,对叶绿素a的光激发三重态进行了磁光选择(MPS)研究,由Virginicum的水溶性叶绿素蛋白(WSCP)提供,据报道。MPS实验将通过线性偏振光激发实现的光选择与电子顺磁共振(EPR)光谱的磁选择相结合,允许确定两种环境中光学跃迁偶极矩和零场分裂张量轴的相对方向。我们证明了所提出的方法的鲁棒性,用于定量描述颜料之间的激子相互作用。通过WSCP中的EPR分析确定的光学跃迁偶极矩的方向,被确定为适当的模型系统,与点偶极近似中计算的结果非常吻合。此外,MPS提供有关三重态电子特性的信息,定位于蛋白质簇的单个叶绿素a色素上,就分子框架中零场分裂张量轴的方向而言。
    A magnetophotoselection (MPS) investigation of the photoexcited triplet state of chlorophyll a both in a frozen organic solvent and in a protein environment, provided by the water-soluble chlorophyll protein (WSCP) of Lepidium virginicum, is reported. The MPS experiment combines the photoselection achieved by exciting with linearly polarized light with the magnetic selection of electron paramagnetic resonance (EPR) spectroscopy, allowing the determination of the relative orientation of the optical transition dipole moment and the zero-field splitting tensor axes in both environments. We demonstrate the robustness of the proposed methodology for a quantitative description of the excitonic interactions among pigments. The orientation of the optical transition dipole moments determined by the EPR analysis in WSCP, identified as an appropriate model system, are in excellent agreement with those calculated in the point-dipole approximation. In addition, MPS provides information on the electronic properties of the triplet state, localized on a single chlorophyll a pigment of the protein cluster, in terms of orientation of the zero-field splitting tensor axes in the molecular frame.
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  • 文章类型: Journal Article
    膜活性肽是一类有前途的抗微生物和抗癌治疗剂。出于这个原因,它们的分子作用机制目前正在积极研究。利用电子顺磁共振,我们研究了两种自旋标记的抗菌和细胞毒性肽TrichoginGAIV(Tri)类似物的膜相互作用,具有相反的生物活性:Tri(Api8),能够选择性地杀死癌细胞,和Tri(Leu4),是完全无毒的.在我们试图确定它们不同生物活性的分子基础时,我们研究了肽对脂膜外侧组织的影响,肽定位和寡聚化,在Twitter-离子1-棕榈酰-2-油酰基-sn-甘油-3-磷酸胆碱(POPC)模型膜中,尽管它们的生物活性不同,两种肽类似物(i)都是膜结合的,(ii)显示出弱的低聚倾向,和(iii)不诱导显著的脂质重排。相反,文献数据表明,母体肽Trichogin,它是细胞毒性的,没有任何选择性,很容易发生二聚化并影响POPC膜的重组。它的二聚体参与围绕肽螺旋的旋转,在毫秒时间尺度的低温下观察到的。由于对于非活动的Tri(Leu4)没有观察到后一种行为,我们认为对于短长度的肽,因为三原胶寡聚化和分子运动对于生物活性至关重要,仅靠膜结合不足以预测或解释它。我们设想肽序列的微小变化只影响它们寡聚化的能力,或者它们在膜内的分子运动,可以调节不同组成的膜上的肽活性。
    Membrane-active peptides are a promising class of antimicrobial and anticancer therapeutics. For this reason, their molecular mechanisms of action are currently actively investigated. By exploiting Electron Paramagnetic Resonance, we study the membrane interaction of two spin-labeled analogs of the antimicrobial and cytotoxic peptide trichogin GA IV (Tri), with opposite bioactivity: Tri(Api8), able to selectively kill cancer cells, and Tri(Leu4), which is completely nontoxic. In our attempt to determine the molecular basis of their different biological activity, we investigate peptide impact on the lateral organization of lipid membranes, peptide localization and oligomerization, in the zwitter-ionic 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) model membrane We show that, despite their divergent bioactivity, both peptide analogs (i) are membrane-bound, (ii) display a weak tendency to oligomerization, and (iii) do not induce significant lipid rearrangement. Conversely, literature data show that the parent peptide trichogin, which is cytotoxic without any selectivity, is strongly prone to dimerization and affects the reorganization of POPC membranes. Its dimers are involved in the rotation around the peptide helix, as observed at cryogenic temperatures in the millisecond timescale. Since this latter behavior is not observed for the inactive Tri(Leu4), we propose that for short-length peptides as trichogin oligomerization and molecular motions are crucial for bioactivity, and membrane binding alone is not enough to predict or explain it. We envisage that small changes in the peptide sequence that affect only their ability to oligomerize, or their molecular motions inside the membrane, can tune the peptide activity on membranes of different compositions.
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  • 文章类型: Journal Article
    Nucleoside triphosphates (NTPs) are used as chemical energy source in a variety of cell systems. Structural snapshots along the NTP hydrolysis reaction coordinate are typically obtained by adding stable, nonhydrolyzable adenosine triphosphate (ATP) -analogues to the proteins, with the goal to arrest a state that mimics as closely as possible a physiologically relevant state, e.g., the pre-hydrolytic, transition and post-hydrolytic states. We here present the lessons learned on two distinct ATPases on the best use and unexpected pitfalls observed for different analogues. The proteins investigated are the bacterial DnaB helicase from Helicobacter pylori and the multidrug ATP binding cassette (ABC) transporter BmrA from Bacillus subtilis, both belonging to the same division of P-loop fold NTPases. We review the magnetic-resonance strategies which can be of use to probe the binding of the ATP-mimics, and present carbon-13, phosphorus-31, and vanadium-51 solid-state nuclear magnetic resonance (NMR) spectra of the proteins or the bound molecules to unravel conformational and dynamic changes upon binding of the ATP-mimics. Electron paramagnetic resonance (EPR), and in particular W-band electron-electron double resonance (ELDOR)-detected NMR, is of complementary use to assess binding of vanadate. We discuss which analogues best mimic the different hydrolysis states for the DnaB helicase and the ABC transporter BmrA. These might be relevant also to structural and functional studies of other NTPases.
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  • 文章类型: Journal Article
    During the last years, the food industry is working on the replacement of high energy methodologies with more sustainable techniques for the encapsulation of natural preservatives, in order to enhance their effectiveness as food additives. In the present study, nisin, an antimicrobial agent, was encapsulated in essential oil-containing microemulsions. More specifically, rosemary, thyme, oregano, and dittany essential oil-containing microemulsions were formulated to encapsulate nisin enhancing the system\'s overall antimicrobial activity. The systems were investigated for the interfacial properties and size of the surfactants\' monolayer using electron paramagnetic resonance spectroscopy and dynamic light scattering. Subsequently, nisin-loaded microemulsions were tested for their antimicrobial activity against Lactococcus lactis, Staphylococcus aureus, Listeria monocytogenes, and Bacillus cereus, using the well diffusion assay. Finally, this technique was validated by a killing assay. Overall, this study provides important information on the antibacterial activity of nisin-loaded nano-carriers enhanced by essential oils, in relation to the microemulsions\' structure.
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  • 文章类型: Journal Article
    The oxidative stability of myrtle hydroalcoholic extracts was measured, over storage time, with the EPR spin trapping method under forced ageing conditions. The extracts were prepared with 150 and 300 g l-1 of berries and extraction media with ethanol ranging from 60 to 90%. Two radicals were detected: the PBN-1-hydroxyethyl adduct and the tert-butyl aminoxyl radical. A dimensionless parameter (Ω) calculated on the basis of the lag time, the rate of formation and concentration of the radical species was used to estimate the extracts\' oxidative stability. Ω was strongly influenced by the extraction medium, being lower in extracts with ethanol 60%, and by the time of storage. An inverse correlation was calculated between Ω and ellagic acid concentration, thus suggesting the role of this phenolic acid in the antioxidant properties of the extracts. The radical scavenging activity of the extracts against the hydroxyl radical was also measured.
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