Automatic segmentation

自动分割
  • 文章类型: Journal Article
    背景:前庭神经鞘瘤(VS)是经常随时间监测的良性肿瘤,使用测量技术来评估增长率,但观察者之间存在显著的变异性。这些肿瘤的自动分割可以为跟踪其进展提供更可靠和更有效的方法。特别是考虑到VS的不规则形状和生长模式。
    方法:采用不同卷积神经网络架构和模型的各种研究和分割技术,例如U-Net和CATS,进行了分析。模型是根据它们在不同数据集上的表现进行评估的,和挑战,包括域转移和数据共享,被仔细检查。
    结果:自动分割方法为传统测量技术提供了一种有希望的替代方法,提供精度和效率的潜在好处。然而,这些方法并非没有挑战,特别是当在特定数据集上训练的模型在应用于不同数据集时表现不佳时发生的“域移位”。域自适应等技术,域泛化,和数据多样性作为潜在的解决方案进行了讨论。
    结论:对VS生长的精确测量是一个复杂的过程,体积分析目前似乎比线性测量更可靠。自动分割,尽管面临挑战,为未来的调查提供了一个有希望的途径。健壮,广泛的模型可能会提高跟踪肿瘤生长的效率,从而增强临床决策。需要做进一步的工作来开发更强大的模型,解决域移位,并实现安全数据共享,以实现更广泛的适用性。
    BACKGROUND: Vestibular schwannomas (VSs) are benign tumors often monitored over time, with measurement techniques for assessing growth rates subject to significant interobserver variability. Automatic segmentation of these tumors could provide a more reliable and efficient for tracking their progression, especially given the irregular shape and growth patterns of VS.
    METHODS: Various studies and segmentation techniques employing different Convolutional Neural Network architectures and models, such as U-Net and convolutional-attention transformer segmentation, were analyzed. Models were evaluated based on their performance across diverse datasets, and challenges, including domain shift and data sharing, were scrutinized.
    RESULTS: Automatic segmentation methods offer a promising alternative to conventional measurement techniques, offering potential benefits in precision and efficiency. However, these methods are not without challenges, notably the \"domain shift\" that occurs when models trained on specific datasets underperform when applied to different datasets. Techniques such as domain adaptation, domain generalization, and data diversity were discussed as potential solutions.
    CONCLUSIONS: Accurate measurement of VS growth is a complex process, with volumetric analysis currently appearing more reliable than linear measurements. Automatic segmentation, despite its challenges, offers a promising avenue for future investigation. Robust well-generalized models could potentially improve the efficiency of tracking tumor growth, thereby augmenting clinical decision-making. Further work needs to be done to develop more robust models, address the domain shift, and enable secure data sharing for wider applicability.
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  • 文章类型: Journal Article
    肺癌是男性和女性癌症相关死亡的主要原因。放射治疗(RT)是肺癌的主要治疗方式之一。在给肿瘤目标提供处方剂量的同时,至关重要的是保留目标附近的组织-所谓的危险器官(OAR)。最佳的RT计划得益于对大体肿瘤体积和周围OAR的准确分割。对于放射肿瘤学家来说,手动分割是一项耗时且繁琐的任务。因此,开发自动图像分割以减轻放射肿瘤学家繁琐的轮廓工作至关重要。目前,基于图集的自动分割技术常用于临床。然而,这种技术在很大程度上依赖于图集和分割图像之间的相似性。随着计算机视觉的重大进步,深度学习作为人工智能的一部分,在医学图像自动分割中受到越来越多的关注。在这篇文章中,我们回顾了与肺癌相关的基于深度学习的自动分割技术,并将其与基于图谱的自动分割技术进行了比较。目前,肺、心脏等体积较大的OAR的自动分割。优于小体积的器官,如食道。肺的平均Dice相似系数(DSC),心脏和肝脏超过0.9,脊髓的最佳DSC达到0.9。然而,食管的DSC范围在0.71和0.87之间,表现参差不齐。就总肿瘤体积而言,平均DSC低于0.8。尽管与手动分割相比,基于深度学习的自动分割技术在许多方面显示出显著的优势,各种问题仍然需要解决。我们讨论了基于深度学习的自动分割中的潜在问题,包括低对比度,数据集大小,共识准则,和网络设计。讨论了基于深度学习的自动分割的临床局限性和未来研究方向。
    Lung cancer is the leading cause of cancer-related mortality for males and females. Radiation therapy (RT) is one of the primary treatment modalities for lung cancer. While delivering the prescribed dose to tumor targets, it is essential to spare the tissues near the targets-the so-called organs-at-risk (OARs). An optimal RT planning benefits from the accurate segmentation of the gross tumor volume and surrounding OARs. Manual segmentation is a time-consuming and tedious task for radiation oncologists. Therefore, it is crucial to develop automatic image segmentation to relieve radiation oncologists of the tedious contouring work. Currently, the atlas-based automatic segmentation technique is commonly used in clinical routines. However, this technique depends heavily on the similarity between the atlas and the image segmented. With significant advances made in computer vision, deep learning as a part of artificial intelligence attracts increasing attention in medical image automatic segmentation. In this article, we reviewed deep learning based automatic segmentation techniques related to lung cancer and compared them with the atlas-based automatic segmentation technique. At present, the auto-segmentation of OARs with relatively large volume such as lung and heart etc. outperforms the organs with small volume such as esophagus. The average Dice similarity coefficient (DSC) of lung, heart and liver are over 0.9, and the best DSC of spinal cord reaches 0.9. However, the DSC of esophagus ranges between 0.71 and 0.87 with a ragged performance. In terms of the gross tumor volume, the average DSC is below 0.8. Although deep learning based automatic segmentation techniques indicate significant superiority in many aspects compared to manual segmentation, various issues still need to be solved. We discussed the potential issues in deep learning based automatic segmentation including low contrast, dataset size, consensus guidelines, and network design. Clinical limitations and future research directions of deep learning based automatic segmentation were discussed as well.
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  • 文章类型: Journal Article
    Magnetic resonance imaging (MRI) has proved to be an invaluable component of pathogenesis research in osteoarthritis. Nevertheless, the detection of a meniscal lesion from magnetic resonance (MR) images is always challenging for both clinicians and researchers, because the surrounding tissues lead to similar signals within MR measurements, thus being difficult to discriminate. Moreover, the size and shape of osteoarthritic and non-osteoarthritic menisci vary to a large extent between individuals of same features, e.g. height, weight, age, etc. An effective way to visualize the entire volume of knee menisci is to segment the menisci voxels from the MR images, which is also useful to evaluate particular properties quantitatively. However, segmentation is a tedious and time-consuming task, and requires adequate training for being done properly. With the advancement of both MRI technology and computer methods, researchers have developed several algorithms to automate the task of meniscus segmentation of the individual knee during the last two decades. The objective of this systematic review was to present available fully automatic and semi-automatic segmentation methods of the knee meniscus published in different scientific articles according to the PRISMA statement. This review should provide a vivid description of the scientific advancements to clinicians and researchers in this field to help developing novel automated methods for clinical applications.
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  • 文章类型: Journal Article
    回顾有关在四维计算机断层扫描(4DCT)上对肺部肿瘤体积进行自动轮廓描绘方法的文献。
    在4DCT上手动描绘肺部肿瘤一直是临床实践的金标准。然而,由于数据量大,导致轮廓持续时间更长和目标定义的不确定性,因此资源密集型。通过减少所需的手动输入,自动轮廓可能会成为一种有吸引力的替代方案。从而改善轮廓过程。这篇综述旨在评估准确性,在4DCT数据集上,与肺癌的手动轮廓相比,自动轮廓的变异性和轮廓持续时间。
    进行了文献搜索和综述,以确定有关4DCT上肺部肿瘤轮廓的研究。手动和自动轮廓进行了评估和比较的基础上的准确性,可变性和轮廓持续时间。
    本综述纳入了13项研究,并对其结果进行了比较。发现自动轮廓的精度与手动轮廓相当。与手动轮廓相比,自动轮廓导致观察者之间的变化较小,然而,观察者内部变异性没有显著降低.此外,尽管长时间的计算可能会成为瓶颈,但自动轮廓缩短了轮廓持续时间。
    自动轮廓是可靠和高效的,与手动轮廓相比,具有更好的一致性产生准确的轮廓。然而,在自动传播之前和之后,仍然需要手动输入。
    UNASSIGNED: To review the literature on auto-contouring methods of lung tumour volumes on four-dimensional computed tomography (4DCT).
    UNASSIGNED: Manual delineation of lung tumour on 4DCT has been the gold standard in clinical practice. However, it is resource intensive due to the high volume of data which results in longer contouring duration and uncertainties in defining target. Auto-contouring may present as an attractive alternative by decreasing manual inputs required, thus improving the contouring process. This review aims to assess the accuracy, variability and contouring duration of automatic contouring compared with manual contouring in lung cancer on 4DCT datasets.
    UNASSIGNED: A search and review of literature were conducted to identify studies regarding lung tumour contouring on 4DCT. Manual and auto-contours were assessed and compared based on accuracy, variability and contouring duration.
    UNASSIGNED: Thirteen studies were included in this review and their results were compared. Accuracy of auto-contours was found to be comparable to manual contours. Auto-contouring resulted in lesser inter-observer variation when compared to manual contouring, however there was no significant reduction in intra-observer variability. Additionally, contouring duration was reduced with auto-contouring although long computation time could present as a bottleneck.
    UNASSIGNED: Auto-contouring is reliable and efficient, producing accurate contours with better consistency compared to manual contours. However, manual inputs would still be required both before and after auto-propagation.
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  • 文章类型: Journal Article
    Liver cancer is a common type of malignant tumor in digestive system. At present, computed tomography (CT) plays an important role in the diagnosis and treatment of liver cancer. Segmentation of tumor lesions based on CT is thus critical in clinical diagnosis and treatment. Due to the limitations of manual segmentation, such as inefficiency and subjectivity, the automatic and accurate segmentation based on advanced computational techniques is becoming more and more popular. In this review, we summarize the research progress of automatic segmentation of liver cancer lesions based on CT scans. By comparing and analyzing the results of experiments, this review evaluate various methods objectively, so that researchers in related fields can better understand the current research progress of liver cancer segmentation based on CT scans.
    肝癌是一种常见的消化系统恶性肿瘤。目前电子计算机断层扫描成像(CT)技术已在肝癌诊疗方面发挥着重要作用,而基于 CT 图像的肝癌病灶分割也在临床诊疗中扮演着重要角色。由于人工分割可能存在效率低、主观性强等缺点,因此利用电子计算机来实现对 CT 图像中肝癌病灶的准确、自动分割是当前的研究热点。本文就基于 CT 图像的肝癌病灶自动分割的进展予以综述,通过对比分析实验结果,评估各种分割方法,以便相关领域的科研工作者更好地了解目前肝癌 CT 分割方法的研究进展。.
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