Autoencoder

自动编码器
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    文章类型: Preprint
    ChatGPT的诞生,由OpenAI开发的尖端语言模型聊天机器人,开创了人工智能的新时代,本文生动地展示了其在药物发现领域的创新应用。专注于开发抗可卡因成瘾药物,这项研究采用GPT-4作为虚拟指南,为研究人员提供战略和方法学见解,研究人员为候选药物的生成模型。主要目的是产生具有所需性质的最佳药物样分子。通过利用ChatGPT的功能,这项研究为药物发现过程引入了一种新的方法。人工智能和研究人员之间的这种共生伙伴关系改变了药物开发的方式。聊天机器人成为促进者,引导研究人员走向创新的方法和生产途径,以创造有效的候选药物。这项研究揭示了人类专业知识和人工智能辅助之间的协作协同作用,其中ChatGPT的认知能力增强了潜在药物解决方案的设计和开发。本文不仅探讨了先进AI在药物发现中的整合,而且还通过倡导AI驱动的聊天机器人作为革命性治疗创新的开拓者来重新构想这一景观。
    The birth of ChatGPT, a cutting-edge language model-based chatbot developed by OpenAI, ushered in a new era in AI. However, due to potential pitfalls, its role in rigorous scientific research is not clear yet. This paper vividly showcases its innovative application within the field of drug discovery. Focused specifically on developing anti-cocaine addiction drugs, the study employs GPT-4 as a virtual guide, offering strategic and methodological insights to researchers working on generative models for drug candidates. The primary objective is to generate optimal drug-like molecules with desired properties. By leveraging the capabilities of ChatGPT, the study introduces a novel approach to the drug discovery process. This symbiotic partnership between AI and researchers transforms how drug development is approached. Chatbots become facilitators, steering researchers towards innovative methodologies and productive paths for creating effective drug candidates. This research sheds light on the collaborative synergy between human expertise and AI assistance, wherein ChatGPT\'s cognitive abilities enhance the design and development of potential pharmaceutical solutions. This paper not only explores the integration of advanced AI in drug discovery but also reimagines the landscape by advocating for AI-powered chatbots as trailblazers in revolutionizing therapeutic innovation.
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  • 文章类型: Journal Article
    深度神经网络(DNN)可以解决现实世界的分类任务,具有明显的人类水平的性能。然而,人类与其DNN模型之间的行为表现的真正等效性要求其内部机制处理刺激的等效特征。为了开发这种特征等效性,我们的方法利用了可解释和实验控制的刺激生成模型(逼真的三维纹理面)。人类对随机生成的面孔与四个熟悉的身份的相似性进行了评分。我们从使用不同优化目标训练的五个DNN的激活中预测了这些相似性评级。利用信息理论冗余,反向相关,以及泛化梯度的测试,我们表明,DNN对人类行为的预测有所改善,因为它们的形状和纹理特征与包含人类行为的特征重叠。因此,在比较之前,我们必须将包含大脑行为表现的功能特征及其模型等同起来,when,以及如何处理这些特征。
    Deep neural networks (DNNs) can resolve real-world categorization tasks with apparent human-level performance. However, true equivalence of behavioral performance between humans and their DNN models requires that their internal mechanisms process equivalent features of the stimulus. To develop such feature equivalence, our methodology leveraged an interpretable and experimentally controlled generative model of the stimuli (realistic three-dimensional textured faces). Humans rated the similarity of randomly generated faces to four familiar identities. We predicted these similarity ratings from the activations of five DNNs trained with different optimization objectives. Using information theoretic redundancy, reverse correlation, and the testing of generalization gradients, we show that DNN predictions of human behavior improve because their shape and texture features overlap with those that subsume human behavior. Thus, we must equate the functional features that subsume the behavioral performances of the brain and its models before comparing where, when, and how these features are processed.
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  • 文章类型: Journal Article
    Machine learning (ML) approaches have been widely applied to medical data in order to find reliable classifiers to improve diagnosis and detect candidate biomarkers of a disease. However, as a powerful, multivariate, data-driven approach, ML can be misled by biases and outliers in the training set, finding sample-dependent classification patterns. This phenomenon often occurs in biomedical applications in which, due to the scarcity of the data, combined with their heterogeneous nature and complex acquisition process, outliers and biases are very common. In this work we present a new workflow for biomedical research based on ML approaches, that maximizes the generalizability of the classification. This workflow is based on the adoption of two data selection tools: an autoencoder to identify the outliers and the Confounding Index, to understand which characteristics of the sample can mislead classification. As a study-case we adopt the controversial research about extracting brain structural biomarkers of Autism Spectrum Disorders (ASD) from magnetic resonance images. A classifier trained on a dataset composed by 86 subjects, selected using this framework, obtained an area under the receiver operating characteristic curve of 0.79. The feature pattern identified by this classifier is still able to capture the mean differences between the ASD and Typically Developing Control classes on 1460 new subjects in the same age range of the training set, thus providing new insights on the brain characteristics of ASD. In this work, we show that the proposed workflow allows to find generalizable patterns even if the dataset is limited, while skipping the two mentioned steps and using a larger but not well designed training set would have produced a sample-dependent classifier.
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