Association analysis

关联分析
  • 文章类型: Journal Article
    蒂尔基耶的畜牧业对该国的农业部门和经济至关重要。特别是,绵羊产品是半干旱和高地地区许多土耳其小农的重要收入和生计来源。Türkiye是世界上最大的绵羊生产商之一,其绵羊生产系统严重依赖土著品种。鉴于蒂尔基耶养羊业的重要性,为了使用现代方法开发和优化绵羊育种计划,需要对该国的绵羊育种和遗传改良进行系统的文献综述,如基因组选择。因此,我们根据最新的人口普查数据以及从科学文章中获得的育种和遗传研究,对绵羊种群和农场的当前特征进行了全面的文献综述。羊的数量近年来有所增加,主要是由于国家扶持畜牧业的政策和消费者对营养健康效益高的绵羊乳制品的需求增加。对土耳其本土绵羊的大多数遗传研究仅限于特定的性状和品种。基因组学的使用被发现是初期的,基因组分析仅适用于两个主要品种的遗传力或全基因组关联研究。应扩大遗传力和全基因组关联研究的范围,以包括很少或根本没有受到关注的性状和品种。使用全基因组单核苷酸多态性标记重新审视遗传多样性研究也是值得的。尽管迄今为止没有关于土耳其绵羊基因组选择的报道,基因组学可能有助于克服实施传统的基于谱系的育种计划的困难,这些计划需要准确的谱系记录。由于本地绵羊品种更好地适应当地的环境条件,正确使用育种策略将有助于增加收入,粮食安全,并以可持续的方式减少环境足迹。
    The livestock industry in Türkiye is vital to the country\'s agricultural sector and economy. In particular, sheep products are an important source of income and livelihood for many Turkish smallholder farmers in semi-arid and highland areas. Türkiye is one of the largest sheep producers in the world and its sheep production system is heavily dependent on indigenous breeds. Given the importance of the sheep industry in Türkiye, a systematic literature review on sheep breeding and genetic improvement in the country is needed for the development and optimization of sheep breeding programs using modern approaches, such as genomic selection. Therefore, we conducted a comprehensive literature review on the current characteristics of sheep populations and farms based on the most up-to-date census data and breeding and genetic studies obtained from scientific articles. The number of sheep has increased in recent years, mainly due to the state\'s policy of supporting livestock farming and the increase in consumer demand for sheep dairy products with high nutritional and health benefits. Most of the genetic studies on indigenous Turkish sheep have been limited to specific traits and breeds. The use of genomics was found to be incipient, with genomic analysis applied to only two major breeds for heritability or genome-wide association studies. The scope of heritability and genome-wide association studies should be expanded to include traits and breeds that have received little or no attention. It is also worth revisiting genetic diversity studies using genome-wide single nucleotide polymorphism markers. Although there was no report of genomic selection in Turkish sheep to date, genomics could contribute to overcoming the difficulties of implementing traditional pedigree-based breeding programs that require accurate pedigree recording. As indigenous sheep breeds are better adapted to the local environmental conditions, the proper use of breeding strategies will contribute to increased income, food security, and reduced environmental footprint in a sustainable manner.
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  • 文章类型: Meta-Analysis
    这项荟萃分析的目的是通过筛选多个数据库和灰色文献,系统地回顾泌乳饮食与成熟母乳成分之间的关系。优先考虑以中文和英文发表的定量文章。我们确定了27项横断面研究,其中包括4355名哺乳期妇女。根据这些数据,膳食模式根据脂肪和蛋白质供能比分为四种模式,包括合理脂肪和合理蛋白质饮食(RR),高脂肪和高蛋白饮食(HH),合理的脂肪和高蛋白饮食(RH),以及高脂肪和合理蛋白质饮食(HR)。结果表明,成熟乳中的脂肪含量随着脂肪摄入量的增加而增加,而成熟牛奶中的蛋白质和乳糖含量并没有随着哺乳期母亲的摄入量而增加。在这四种膳食模式中,在RR时,母乳中大量营养素的能量比最接近0-6M岁婴儿的估计能量比。我们的研究表明,应该提倡合理的膳食模式,以及不合理的饮食模式,特别是高脂肪和高蛋白的饮食模式,在哺乳期应避免。
    The aim of this meta-analysis was to systematically review the relationships between lactation diet and the composition of mature breast milk through screening multiple databases and gray literatures, with priority given to quantitative articles published in Chinese and English. We identified 27 cross-sectional studies that included 4355 lactating women. According to these data, dietary patterns were categorized into four patterns based on the fat and protein energy supplying ratio, including rational-fat and rational-protein dietary (RR), high-fat and high-protein dietary (HH), rational-fat and high-protein dietary (RH), and high-fat and rational-protein dietary (HR). The results showed the fat content in mature milk was increased with increments of fat intake, while both the protein and lactose contents in mature milk did not increase with their intakes for lactating mothers. Among these four dietary patterns, the energy ratio of macronutrients in human milk at the RR was the closest to the estimated energy ratio for infants aged 0-6 M. In conclusion, our study represents that the rational dietary pattern should be advocated, and the irrational dietary patterns, especially high-fat and high-protein dietary patterns, should be avoided during lactation stage.
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  • 文章类型: Journal Article
    胃癌(GC)是全球癌症死亡的主要原因之一。大量研究表明,胃微生物群可通过产生有害的微生物代谢产物促进GC的发生和发展,表明发现生物标志物的可能性。代谢组学已经成为一种先进的有前途的分析方法,用于分析微生物群衍生的代谢产物,这大大加快了我们对GC中宿主-微生物群代谢相互作用的理解。在这次审查中,我们简要整理了胃微生物群及其代谢产物与GC相关的研究进展。并进一步探讨了代谢组学和胃微生物组关联分析在诊断中的应用,GC的预防和治疗。
    Gastric cancer (GC) is one of the leading causes of cancer mortality worldwide. Numerous studies have shown that the gastric microbiota can contribute to the occurrence and development of GC by generating harmful microbial metabolites, suggesting the possibility of discovering biomarkers. Metabolomics has emerged as an advanced promising analytical method for the analysis of microbiota-derived metabolites, which have greatly accelerated our understanding of host-microbiota metabolic interactions in GC. In this review, we briefly compiled recent research progress on the changes of gastric microbiota and its metabolites associated with GC. And we further explored the application of metabolomics and gastric microbiome association analysis in the diagnosis, prevention and treatment of GC.
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  • 文章类型: Journal Article
    遗传关联研究在阐明许多复杂疾病/性状的遗传背景方面非常成功。然而,在这些研究中,由于技术困难和大多数工具仅利用来自常染色体的遗传数据这一事实,X染色体经常被忽视.在这次审查中,我们的目标是提供不同的实用方法的概述,遵循纳入X染色体的关联分析,如全基因组关联研究和表达数量性状基因座分析。总的来说,选择哪种测试统计最合适将取决于三个主要标准:(1)基础X失活模型,(2)如果Hardy-Weinberg平衡成立并且预期性别特定的等位基因频率,以及(3)是否需要对混杂变量进行调整。总而言之,建议将不同的关联试验组合用于X染色体分析.
    Genetic association studies have been very successful at elucidating the genetic background of many complex diseases/traits. However, the X-chromosome is often neglected in these studies because of technical difficulties and the fact that most tools only utilize genetic data from autosomes. In this review, we aim to provide an overview of different practical approaches that are followed to incorporate the X-chromosome in association analysis, such as Genome-Wide Association Studies and Expression Quantitative Trait Loci Analysis. In general, the choice of which test statistics is most appropriate will depend on three main criteria: (1) the underlying X-inactivation model, (2) if Hardy-Weinberg equilibrium holds and sex-specific allele frequencies are expected and (3) whether adjustment for confounding variables is required. All in all, it is recommended that a combination of different association tests should be used for the analysis of X-chromosome.
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  • 文章类型: Journal Article
    食品和饮料组之间的关联与饮食相关的慢性病(DRCD)的风险一直是预防性营养深入研究的主题。汇集/荟萃分析和系统评价(PMASR)旨在更好地表征这些关联。迄今为止,然而,尚未尝试合成所有评估了食品和饮料组和DRCD之间关系的PMASR.本综述的目的是汇总PMASR,以概述食品和饮料组(n=17)与DRCD(n=10)之间的关联,并为未来的研究需求建立新的方向。1950年至2013年间发表的对304种PMASRs的审查证实,植物性食品组比动物性食品组对DRCD更具保护性。在植物食物组中,谷物产品比水果和蔬菜更具保护性。在动物性食物组中,乳制品/奶制品对DRCD的风险有中性影响,而红色/加工肉类往往会增加风险。在饮料中,茶是最有保护作用的饮料,而软饮料对DRCD的保护作用最小。对于所检查的两个DRCD,肌肉减少症和肾脏疾病,没有发现PMASR。超重/肥胖,2型糖尿病,和各种类型的心血管疾病和癌症占289的PMASR。迫切需要进一步研究食品和饮料群体与心理健康之间的关系,骨骼健康,消化系统疾病,肝脏疾病,肾脏疾病,肥胖,和2型糖尿病。
    Associations between food and beverage groups and the risk of diet-related chronic disease (DRCD) have been the subject of intensive research in preventive nutrition. Pooled/meta-analyses and systematic reviews (PMASRs) aim to better characterize these associations. To date, however, there has been no attempt to synthesize all PMASRs that have assessed the relationship between food and beverage groups and DRCDs. The objectives of this review were to aggregate PMASRs to obtain an overview of the associations between food and beverage groups (n = 17) and DRCDs (n = 10) and to establish new directions for future research needs. The present review of 304 PMASRs published between 1950 and 2013 confirmed that plant food groups are more protective than animal food groups against DRCDs. Within plant food groups, grain products are more protective than fruits and vegetables. Among animal food groups, dairy/milk products have a neutral effect on the risk of DRCDs, while red/processed meats tend to increase the risk. Among beverages, tea was the most protective and soft drinks the least protective against DRCDs. For two of the DRCDs examined, sarcopenia and kidney disease, no PMASR was found. Overweight/obesity, type 2 diabetes, and various types of cardiovascular disease and cancer accounted for 289 of the PMASRs. There is a crucial need to further study the associations between food and beverage groups and mental health, skeletal health, digestive diseases, liver diseases, kidney diseases, obesity, and type 2 diabetes.
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