Improving the recovery of organic matter and phosphorus (P) from hazardous biowastes such as swine manure using acidic substrates (ASs) in conjunction with aerobic composting is of great interest. This work aimed to investigate the effects of ASs on the humification and/or P migration as well as on microbial succession during the swine manure composting, employing multivariate and multiscale approaches. Adding ASs, derived from wood vinegar and humic acid, increased the degree of humification and thermal stability of the compost. The 31P nuclear magnetic resonance spectroscopy and X-ray absorption near-edge structure analyses demonstrated compost P was in the form of struvite crystals, Ca/Al-P phases, and Poly-P (all inorganic P species) as well as inositol hexakisphosphate and Mono-P (organophosphorus species). However, the efficiency of P recovery could be improved by generating more struvite by adding the ASs. The flows among nutrient pools resulted from the diversity in the dominant microbial communities in different composting phases after introducing the ASs and appearance of Bacillus spp. in all phases. These results demonstrate the potential value of ASs for regulating and/or improving nutrients flow during the composting of hazardous biowastes for producing higher quality compost, which may maximize their beneficial benefits and applications.

Livestock manure is considered as an important source for spreading antibiotic resistance genes (ARGs) into the environment, and therefore poses a direct threat to public health. Whereas the effects of reused manure on soil microbial communities and ARGs have been studied extensively, comprehensive characterizations of microbial communities and ARGs of manure produced by different management methods are not well understood. Here, we analyzed the fate of microbial communities and ARGs of cow manure treated by three conventional management strategies: aerobic composting, mechanical drying and precipitation, applying an integrated-omics approach combining metagenomics and metaproteomics. Integrated-omics demonstrated that composted manure contained the lowest diversity of microbial community and ARGs compared with manure treated by other two strategies. Quantitative PCR methods revealed that the abundances of ARGs were reduced by over 83 % after composting for 14 days, regardless of the season. Besides, the potential ARG hosts Acinetobacter and Pseudomonas dominating mechanical drying process were sharply decreased in abundances after composting. The significant co-occurrence networks among bacteria, ARGs and transposase gene tnpA-01 in composting samples indicated the important role of these bacteria in the dissemination of ARGs. These findings offer insight into potential strategies to control the spread of ARGs during livestock manure reuse.