• 文章类型: Journal Article
    衰弱是一种多方面的老年综合征,其特征是对压力事件的脆弱性增加。代谢组学研究是更好地理解病理状况潜在机制的有价值的工具.这篇综述旨在阐明虚弱的代谢组学概况。
    本系统评价是根据系统评价和荟萃分析(PRISMA)2020声明的首选报告项目进行的。在多个数据库中进行了全面搜索。最初,检索到5027个结果,删除重复项之后,1838个独特的研究进行筛选。随后,248项研究进行了全文筛选,21项研究最终纳入分析。数据提取由两位作者精心执行,并使用关键评估技能计划(CASP)清单评估选定研究的质量。
    研究结果表明,与健壮的受试者相比,某些支链氨基酸(BCAAs)水平较低,而虚弱个体的谷氨酸和谷氨酰胺水平较高。此外,随着虚弱的发展,鞘磷脂和磷脂酰胆碱(PC)呈下降趋势。此外,其他代谢衍生物,比如肉碱,表现出与脆弱的显著关联。这些代谢物主要通过与三羧酸和尿素循环相关的生化途径相互连接。值得注意的是,虚弱与代谢衍生物的减少有关,包括肉碱.
    这项研究强调了必需代谢物之间的复杂关系,包括氨基酸和脂类,与健壮的个体相比,他们在虚弱的个体中的水平各不相同。它提供了一组全面的代谢物,阐明了他们与虚弱的潜在联系,并扩大了我们对这种复杂综合征的理解。
    UNASSIGNED: Frailty is a multifaceted geriatric syndrome characterized by an increased vulnerability to stressful events. metabolomics studies are valuable tool for better understanding the underlying mechanisms of pathologic conditions. This review aimed to elucidate the metabolomics profile of frailty.
    UNASSIGNED: This systematic review was conducted in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-analysis (PRISMA) 2020 statement. A comprehensive search was conducted across multiple databases. Initially, 5027 results were retrieved, and after removing duplicates, 1838 unique studies were subjected to screening. Subsequently, 248 studies underwent full-text screening, with 21 studies ultimately included in the analysis. Data extraction was performed meticulously by two authors, and the quality of the selected studies was assessed using the Critical Appraisal Skills Program (CASP) checklist.
    UNASSIGNED: The findings revealed that certain Branched-chain amino acids (BCAAs) levels were lower in frail subjects compared to robust subjects, while levels of glutamate and glutamine were higher in frail individuals. Moreover, sphingomyelins and phosphatidylcholines (PC) displayed a decreasing trend as frailty advanced. Additionally, other metabolic derivatives, such as carnitine, exhibited significant associations with frailty. These metabolites were primarily interconnected through biochemical pathways related to the tricarboxylic acid and urea cycles. Notably, frailty was associated with a decrease in metabolic derivatives, including carnitine.
    UNASSIGNED: This study underscores the intricate relationship between essential metabolites, including amino acids and lipids, and their varying levels in frail individuals compared to their robust counterparts. It provides a comprehensive panel of metabolites, shedding light on their potential associations with frailty and expanding our understanding of this complex syndrome.
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  • 文章类型: Journal Article
    组学方法极大地促进了我们对鸡繁殖的几个方面的理解。这篇综述论文概述了基因组学等组学技术的使用,转录组学,蛋白质组学,和代谢组学来阐明鸡的繁殖机制。基因组学通过允许检查鸡的完整基因组成,改变了对鸡繁殖的研究,导致发现与生殖特征和疾病相关的基因。转录组学提供了对生殖过程中涉及的基因表达模式和调节机制的见解,允许更好地了解发育阶段和激素调节。此外,蛋白质组学使得更容易识别和量化参与生殖生理学的蛋白质,以更好地理解驱动生育力的分子机制,胚胎发育,鸡蛋质量。代谢组学已成为一种有用的技术,用于了解与生殖性能相关的代谢途径和生物标志物。为加强育种策略和生殖健康提供重要见解。组学数据的整合导致了与鸡繁殖特征相关的关键分子途径和生物标志物的鉴定,提供有针对性的遗传选择和改进生殖管理方法的机会。此外,组学技术有助于创造生育力和胚胎活力的生物标志物,为家禽行业提供有效繁殖和生殖健康管理的工具。最后,组学技术通过揭示支撑繁殖过程的分子复杂性,大大改善了我们对鸡繁殖的理解。
    Omics approaches have significantly contributed to our understanding of several aspects of chicken reproduction. This review paper gives an overview of the use of omics technologies such as genomics, transcriptomics, proteomics, and metabolomics to elucidate the mechanisms of chicken reproduction. Genomics has transformed the study of chicken reproduction by allowing the examination of the full genetic makeup of chickens, resulting in the discovery of genes associated with reproductive features and disorders. Transcriptomics has provided insights into the gene expression patterns and regulatory mechanisms involved in reproductive processes, allowing for a better knowledge of developmental stages and hormone regulation. Furthermore, proteomics has made it easier to identify and quantify the proteins involved in reproductive physiology to better understand the molecular mechanisms driving fertility, embryonic development, and egg quality. Metabolomics has emerged as a useful technique for understanding the metabolic pathways and biomarkers linked to reproductive performance, providing vital insights for enhancing breeding tactics and reproductive health. The integration of omics data has resulted in the identification of critical molecular pathways and biomarkers linked with chicken reproductive features, providing the opportunity for targeted genetic selection and improved reproductive management approaches. Furthermore, omics technologies have helped to create biomarkers for fertility and embryonic viability, providing the poultry sector with tools for effective breeding and reproductive health management. Finally, omics technologies have greatly improved our understanding of chicken reproduction by revealing the molecular complexities that underpin reproductive processes.
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  • 文章类型: Journal Article
    在现代医疗保健的动态景观中,预测和诊断疾病的能力,特别是在早期治疗显著影响结果的情况下,是最重要的。癌症,一种复杂而异质性的疾病,强调早期诊断对患者生存至关重要。代谢组学信息的整合已经成为一个重要的工具,补充基因型-表型景观,并提供对活跃代谢机制和疾病诱导的失调途径的见解。
    这篇综述探讨了在癌症研究领域中寻找经过验证的生物标志物的十年发展。通过批判性地评估各种研究文章,临床试验,和研究,这篇综述旨在概述在鉴定和验证各种癌症类型的代谢组学结果中的生物标志物方面所采用的方法学和取得的进展.
    通过对800多项研究的探索,这篇综述为在涉及癌症的代谢组学研究中寻找生物标志物的最新技术建立了一个总体思路,包括一定水平的结果验证.代谢物作为诊断标志物到达临床并对患者健康产生真正影响的潜力是巨大的,但挑战仍有待探索。
    UNASSIGNED: In the dynamic landscape of modern healthcare, the ability to anticipate and diagnose diseases, particularly in cases where early treatment significantly impacts outcomes, is paramount. Cancer, a complex and heterogeneous disease, underscores the critical importance of early diagnosis for patient survival. The integration of metabolomics information has emerged as a crucial tool, complementing the genotype-phenotype landscape and providing insights into active metabolic mechanisms and disease-induced dysregulated pathways.
    UNASSIGNED: This review explores a decade of developments in the search for biomarkers validated within the realm of cancer studies. By critically assessing a diverse array of research articles, clinical trials, and studies, this review aims to present an overview of the methodologies employed and the progress achieved in identifying and validating biomarkers in metabolomics results for various cancer types.
    UNASSIGNED: Through an exploration of more than 800 studies, this review has allowed to establish a general idea about state-of-art in the search of biomarkers in metabolomics studies involving cancer which include certain level of results validation. The potential for metabolites as diagnostic markers to reach the clinic and make a real difference in patient health is substantial, but challenges remain to be explored.
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  • 文章类型: Journal Article
    血浆代谢物与不良心血管(CV)结局的关联仍未得到充分研究,可能对CV风险分层有用。我们进行了系统评价和荟萃分析,以建立血液代谢物与心力衰竭(HF)患者不良CV结果之间的相关性。包括四个队列,涉及83种代谢物和37种代谢物比例,在1158例HF患者中测量。42种代谢物和3种代谢物比率的危险比(HR),至少在两项研究中,通过荟萃分析进行组合。较高水平的组氨酸(HR0.74,95%CI[0.64;0.86])和色氨酸(HR0.82[0.71;0.96])似乎具有保护作用,而较高水平的对称二甲基精氨酸(SDMA)(HR1.58[1.30;1.93]),N-甲基-1-组氨酸(HR1.56[1.27;1.90]),SDMA/精氨酸(HR1.38[1.14;1.68]),腐胺(HR1.31[1.06;1.61]),甲硫氨酸亚砜(HR1.26[1.03;1.52]),和5-羟基赖氨酸(HR1.25[1.05;1.48])与CV事件的高风险相关.我们的发现证实了代谢失衡与HF患者发生CV事件的高风险之间的重要关联。然而,缺乏标准化和数据报告阻碍了更多研究的比较.在未来的临床场景中,代谢组学将极大地受益于协调样品处理,数据分析,reporting,和分享。
    The associations of plasma metabolites with adverse cardiovascular (CV) outcomes are still underexplored and may be useful in CV risk stratification. We performed a systematic review and meta-analysis to establish correlations between blood metabolites and adverse CV outcomes in patients with heart failure (HF). Four cohorts were included, involving 83 metabolites and 37 metabolite ratios, measured in 1158 HF patients. Hazard ratios (HR) of 42 metabolites and 3 metabolite ratios, present in at least two studies, were combined through meta-analysis. Higher levels of histidine (HR 0.74, 95% CI [0.64; 0.86]) and tryptophan (HR 0.82 [0.71; 0.96]) seemed protective, whereas higher levels of symmetric dimethylarginine (SDMA) (HR 1.58 [1.30; 1.93]), N-methyl-1-histidine (HR 1.56 [1.27; 1.90]), SDMA/arginine (HR 1.38 [1.14; 1.68]), putrescine (HR 1.31 [1.06; 1.61]), methionine sulfoxide (HR 1.26 [1.03; 1.52]), and 5-hydroxylysine (HR 1.25 [1.05; 1.48]) were associated with a higher risk of CV events. Our findings corroborate important associations between metabolic imbalances and a higher risk of CV events in HF patients. However, the lack of standardization and data reporting hampered the comparison of a higher number of studies. In a future clinical scenario, metabolomics will greatly benefit from harmonizing sample handling, data analysis, reporting, and sharing.
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  • 文章类型: Journal Article
    银纳米颗粒用于激光质谱法以替代有机基质。由于其独特的属性,它们使各种极性和电离能力的样品的有效解吸/电离。这篇综述提出了合成单同位素银纳米颗粒的新方法,以及使用涂覆有这些纳米颗粒的靶标进行各种小分子化合物的定性和定量分析。此外,介绍了AgNPs在代谢组学分析中的应用进展结果.
    Silver nanoparticles are used in laser mass spectrometry to replace organic matrices. Thanks to their unique properties, they enable effective desorption/ionization of samples of various polarities and ionization abilities. This review presents new methods for the synthesis of monoisotopic silver nanoparticles and the use of targets coated with these nanoparticles for qualitative and quantitative analyses of various small-molecule compounds. Additionally, the results of progress in the application of AgNPs for metabolomics analyses were presented.
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  • 文章类型: Journal Article
    随着塑料制造和消费的增加,微塑料/纳米塑料(MP/NP)污染已成为全球紧迫的全球环境问题之一,这对生态系统和人类健康构成了重大威胁。近年来,越来越多的研究证实,MP/NP对维管植物的营养生长和性过程有直接或间接的影响。但是潜在的机制仍然模棱两可。MP/NP颗粒可以被植物根或叶吸附和/或吸收,从而对植物产生不同的影响。这篇综述旨在讨论MP/NP对维管植物的直接影响,特别强调代谢和分子水平的变化。MP/NP可以改变物质和能量代谢,以及基因表达模式的变化。受MP/NP胁迫影响的关键方面包括碳和氮代谢,氨基酸生物合成与植物激素信号转导,应激相关基因的表达,碳和氮代谢相关基因,以及那些参与病原体防御的人。此外,这篇综述提供了对暴露于MP/NP的植物的生长和生理反应的最新见解,包括种子/孢子萌发等现象,光合作用,氧化应激,细胞毒性,和遗传毒性。通过从生理和分子角度检查MP/NP的直接影响,这篇综述为未来研究植物和塑料污染物之间复杂的相互作用奠定了基础。
    With increasing plastic manufacture and consumption, microplastics/nanoplastics (MP/NP) pollution has become one of the world\'s pressing global environmental issues, which poses significant threats to ecosystems and human health. In recent years, sharp increasing researches have confirmed that MP/NP had direct or indirect effects on vegetative growth and sexual process of vascular plant. But the potential mechanisms remain ambiguous. MP/NP particles can be adsorbed and/or absorbed by plant roots or leaves and thus cause diverse effects on plant. This holistic review aims to discuss the direct effects of MP/NP on vascular plant, with special emphasis on the changes of metabolic and molecular levels. MP/NP can alter substance and energy metabolism, as well as shifts in gene expression patterns. Key aspects affected by MP/NP stress include carbon and nitrogen metabolism, amino acids biosynthesis and plant hormone signal transduction, expression of stress related genes, carbon and nitrogen metabolism related genes, as well as those involved in pathogen defense. Additionally, the review provides updated insights into the growth and physiological responses of plants exposed to MP/NP, encompassing phenomena such as seed/spore germination, photosynthesis, oxidative stress, cytotoxicity, and genotoxicity. By examining the direct impact of MP/NP from both physiological and molecular perspectives, this review sets the stage for future investigations into the complex interactions between plants and plastic pollutants.
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  • 文章类型: Journal Article
    代谢组学的新兴领域引起了研究人员对良性胆囊疾病的兴趣,其中包括胆囊息肉等病症,胆结石,和胆囊炎,这是常见的消化系统疾病。随着代谢组学的不断进步,研究人员越来越关注其在良性胆囊疾病研究中的适用性,为诊断提供新的视角,治疗性的,和预后评估。这篇全面的综述主要描述了液相色谱-质谱联用技术,气相色谱-质谱,和核磁共振及其在良性胆囊疾病研究中的应用。代谢组学在这些疾病的各个方面都取得了显著的进展,从早期诊断开始,病因学研究,评估疾病进展和预后,和优化治疗策略。然而,代谢组学在良性胆囊疾病的研究中仍然存在挑战。其中包括与数据处理和分析有关的问题,生物标志物发现和验证,跨学科研究整合,以及个性化医疗的发展。本文试图总结迄今为止的研究成果,突出未来的研究方向,为良性胆囊疾病的代谢组学研究提供参考。
    The burgeoning field of metabolomics has piqued the interest of researchers in the context of benign gallbladder diseases, which include conditions such as gallbladder polyps, gallstones, and cholecystitis, which are common digestive system disorders. As metabolomics continues to advance, researchers have increasingly focused their attention on its applicability in the study of benign gallbladder diseases to provide new perspectives for diagnostic, therapeutic, and prognostic evaluation. This comprehensive review primarily describes the techniques of liquid chromatography-mass spectrometry, gas chromatography-mass spectrometry, and nuclear magnetic resonance and their respective applications in the study of benign gallbladder disease. Metabolomics has made remarkable progress in various aspects of these diseases, ranging from early diagnosis, etiological research, assessment of disease progression and prognosis, and optimization of therapeutic strategies. However, challenges remain in the field of metabolomics in the study of benign gallbladder diseases. These include issues related to data processing and analysis, biomarker discovery and validation, interdisciplinary research integration, and the advancement of personalized medicine. This article attempts to summarize research findings to date, highlight future research directions, and provide a reference point for metabolomics research in benign gallbladder disease.
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  • 文章类型: Journal Article
    来自血液的代谢组学概况,尿液,或其他体液有可能客观地评估食物和营养素的摄入量,从而加强营养流行病学研究。代谢组学平台可以包括目标组件,用于估计预定集合中单个代谢物的相对浓度。或全局组件,通常涉及质谱,更广泛地估计相对浓度。虽然特定的代谢物浓度通常与单一食物或食物组的摄入量相关,多种代谢物可能与某些食物的摄入量或特定的营养素摄入量相关,每个都可以用绝对术语或相对于总能量摄入来表示。这里,我简要回顾了过去20年来在食品/食品组摄入生物标志物的开发和应用方面的进展,营养素,和饮食模式,主要是借鉴最近的几篇评论。在这样做的时候,我强调候选生物标志物识别的标准和研究设计,生物标志物验证,和摄入生物标志物的应用。在营养流行病学研究中,摄入生物标志物用于饮食和慢性病关联研究仍然很少见。我在这里的评论将主要来自我们的研究小组最近对妇女健康倡议队列的贡献。我将通过描述一些在集体20年努力的基础上再接再厉的机会来完成这一贡献,包括与来自人类喂养研究的血液和尿液样本的代谢组学分析相关的机会,这些研究接近习惯性饮食。
    Metabolomics profiles from blood, urine, or other body fluids have the potential to assess intakes of foods and nutrients objectively, thereby strengthening nutritional epidemiology research. Metabolomics platforms may include targeted components that estimate the relative concentrations for individual metabolites in a predetermined set, or global components, typically involving mass spectrometry, that estimate relative concentrations more broadly. While a specific metabolite concentration usually correlates with the intake of a single food or food group, multiple metabolites may be correlated with the intake of certain foods or with specific nutrient intakes, each of which may be expressed in absolute terms or relative to total energy intake. Here, I briefly review the progress over the past 20 years on the development and application intake biomarkers for foods/food groups, nutrients, and dietary patterns, primarily by drawing from several recent reviews. In doing so, I emphasize the criteria and study designs for candidate biomarker identification, biomarker validation, and intake biomarker application. The use of intake biomarkers for diet and chronic disease association studies is still infrequent in nutritional epidemiology research. My comments here will derive primarily from our research group\'s recent contributions to the Women\'s Health Initiative cohorts. I will complete the contribution by describing some opportunities to build on the collective 20 years of effort, including opportunities related to the metabolomics profiling of blood and urine specimens from human feeding studies that approximate habitual diets.
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  • 文章类型: Journal Article
    背景:心力衰竭(HF)是一种重要的健康问题,通常与主要的发病率和死亡率有关。代谢异常发生在HF中,可用于识别有发展该疾病风险的个体。此外,这些代谢变化可能在HF的发病和进展中起作用。尽管有这些知识,代谢变化在诊断中的效用,管理,预后,慢性HF患者的治疗尚未进行系统评价。
    目的:本范围综述旨在系统评价HF患者代谢变化的文献,描述这些变化在发病机理中的作用,programming,和关心,并确定知识差距,为未来的研究提供信息。
    方法:本审查将使用基于以前报告的策略进行,JBI证据综合手册,以及系统审查的首选报告项目和范围审查的荟萃分析扩展(PRISMA-ScR)指南。对电子数据库的全面搜索(Medline,EBSCOhost,Scopus,和WebofScience)将使用与HF相关的关键字进行,心肌衰竭,代谢组,代谢组学,和分析化学技术。搜索将包括2010年1月至2023年9月之间发表的原始同行评审的研究论文(对人类进行的临床研究以及带有或不带有荟萃分析的系统综述)。包括18岁以下或未发表英语的HF患者的研究将被排除。两位作者(UGA和MB)将独立筛选标题和摘要,并对相关和符合条件的论文进行全文筛选。相关数据将被提取和合成,并将咨询第三作者或小组以解决差异。
    结果:这项范围界定审查将从2010年1月到2023年9月,其结果将以同行评审的方式发布,开放获取期刊作为2024年的范围审查。调查结果的介绍将使用PRISMA-ScR流程图以及描述性和描述性格式,包括表格和图形显示,提供提取数据的全面概述。
    结论:本综述旨在收集和分析HF患者代谢变化的现有证据,旨在增强我们当前对这个主题的理解。此外,这篇综述将确定最常用和最合适的样本,分析方法,和特定的代谢组来促进标准化,结果的再现性,以及在诊断中的应用,治疗,和HF患者的危险分层。最后,希望这篇综述的结果将激发对低收入和中等收入国家HF患者代谢组的进一步研究.
    背景:开放科学框架;https://osf.io/sp6xj。
    DERR1-10.2196/53905。
    BACKGROUND: Heart failure (HF) is a significant health problem that is often associated with major morbidity and mortality. Metabolic abnormalities occur in HF and may be used to identify individuals at risk of developing the condition. Furthermore, these metabolic changes may play a role in the pathogenesis and progression of HF. Despite this knowledge, the utility of metabolic changes in diagnosis, management, prognosis, and therapy for patients with chronic HF has not been systematically reviewed.
    OBJECTIVE: This scoping review aims to systematically appraise the literature on metabolic changes in patients with HF, describe the role of these changes in pathogenesis, progression, and care, and identify knowledge gaps to inform future research.
    METHODS: This review will be conducted using a strategy based on previous reports, the JBI Manual for Evidence Synthesis, and the Preferred Reporting Items for Systematic Reviews and Meta-Analysis Extension for Scoping Reviews (PRISMA-ScR) guidelines. A comprehensive search of electronic databases (Medline, EBSCOhost, Scopus, and Web of Science) will be conducted using keywords related to HF, myocardial failure, metabolomes, metabonomics, and analytical chemistry techniques. The search will include original peer-reviewed research papers (clinical studies conducted on humans and systematic reviews with or without a meta-analysis) published between January 2010 and September 2023. Studies that include patients with HF younger than 18 years or those not published in English will be excluded. Two authors (UGA and MB) will screen the titles and abstracts independently and perform a full-text screen of the relevant and eligible papers. Relevant data will be extracted and synthesized, and a third author or group will be consulted to resolve discrepancies.
    RESULTS: This scoping review will span from January 2010 to September 2023, and the results will be published in a peer-reviewed, open-access journal as a scoping review in 2024. The presentation of the findings will use the PRISMA-ScR flow diagram and descriptive and narrative formats, including tables and graphical displays, to provide a comprehensive overview of the extracted data.
    CONCLUSIONS: This review aims to collect and analyze the available evidence on metabolic changes in patients with HF, aiming to enhance our current understanding of this topic. Additionally, this review will identify the most commonly used and suitable sample, analytical method, and specific metabolomes to facilitate standardization, reproducibility of results, and application in the diagnosis, treatment, and risk stratification of patients with HF. Finally, it is hoped that this review\'s outcomes will inspire further research into the metabolomes of patients with HF in low- and middle-income countries.
    BACKGROUND: Open Science Framework; https://osf.io/sp6xj.
    UNASSIGNED: DERR1-10.2196/53905.
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  • 文章类型: Journal Article
    氨基酸作为流行的运动补充剂的功效引发了争论,由于临床试验的多样性和异质性,它们对运动表现的影响因体育学科而异。这篇综述评估了氨基酸的致人潜力,通过对支链氨基酸(BCAAs)临床试验结果的严格评估,精氨酸谷氨酰胺,瓜氨酸,β-丙氨酸,和牛磺酸,在各种陆地和水上运动的精英运动员上表演。这里回顾的临床试验证实了显著的生理益处,从而支持了BCAA,不同剂量的瓜氨酸和精氨酸对运动员的耐力和整体表现有积极影响。此外,临床试验和代谢组学研究的结果表明,在未来,设计精确的配方以针对特定运动的需求将更有益。例如,一些氨基酸的组合可能更适合于长期耐力,而另一些可能适合于短暂爆发的过度能量。从这篇综述中得出的最重要的见解是确定了迫切需要研究的三个关键领域:a)生物标志物,可以确定生理终点,并区分氨基酸在抗疲劳或减轻肌肉酸痛或增强能量方面的特定作用b)对精英运动员进行深入的运动方面的临床试验,以了解特定运动的体格效应需求c)设计类似类型的运动而不是常见的补品的精确配方。
    The efficacy of amino acids as popular sports supplements has triggered debates, with their impact on athletic performance varying across sports disciplines due to diversity and heterogeneity in clinical trials. This review evaluates the ergogenic potential of amino acids, by critical appraisal of results of clinical trials of Branched chain amino acids (BCAAs), arginine, glutamine, citrulline, β-alanine, and taurine, performed on elite sportsmen from various land and water sports. Clinical trials reviewed here confirm notable physiological benefits thereby supporting the claim that BCAA, citrulline and arginine in various doses can have positive effects on endurance and overall performance in sportsperson. Furthermore, results of clinical trials and metabolomic studies indicate that in future it would be more beneficial to design precise formulations to target the requirement of specific sports. For instance, some combinations of amino acids may be more suitable for long term endurance and some others may be suitable for short burst of excessive energy. The most important insights from this review are the identification of three key areas where research is urgently needed: a) Biomarkers that can identify the physiological end points and to distinguish the specific role of amino acid as anti-fatigue or reducing muscle soreness or enhancing energy b) In-depth sports-wise clinical trials on elite sportsperson to understand the ergogenic needs for the particular sports c) Design of precision formula for similar types of sports instead of common supplements.
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