structure-function correlations

  • 文章类型: Journal Article
    电化学NRR合成氨被认为是一种有前途的方法,因为它具有零污染排放的优点,可行的反应程序,良好的安全性和易于管理。已经做出了多项努力,以探索地球丰富的元素为基础的纳米材料作为实现其工业应用的高效电催化剂。其中,Ni基纳米材料被优先考虑作为催化NRR的有吸引力的非贵金属电催化剂,因为它们是地球丰度的,非常容易合成,并且还具有高电催化活性和耐久性的潜力。在这次审查中,在简要阐明电化学过程中NRR的潜在机制后,系统总结了近年来具有代表性的镍基电催化剂的研究进展,包括单金属镍基纳米材料,双金属镍基纳米材料,多金属镍基纳米材料,等。特别是,我们讨论了物理化学性质的影响,如阶段,结晶度形态学,composition,缺陷,杂原子掺杂,和应变工程,对上述电催化剂的综合性能,目的是建立电催化剂的纳米结构-功能关系。此外,指出并强调了镍基电催化剂在NRR中的应用前景。这篇综述中的通用方法可能会扩展NRR的前沿,并为开发高效的镍基电催化剂提供灵感。
    The electrochemical NRR to synthesize ammonia is considered as a promising method due to its approvable advantages of zero-pollution emission, feasible reaction proceedings, good safety and easy management. The multiple efforts have been devoted to the exploration of earth-abundant-element-based nanomaterials as high-efficiency electrocatalysts for realizing their industrial applications. Among these, the Ni-based nanomaterials is prioritized as an attractive non-noble-metal electrocatalysts for catalyzing NRR because they are earth-abundance and exceedingly easy to synthesize as well as also delivers the potential of high electrocatalytic activity and durability. In this review, after briefly elucidating the underlying mechanisms of NRR during the electrochemical process, we systematically sum up the recent research progress in representative Ni-based electrocatalysts, including monometallic Ni-based nanomaterials, bimetallic Ni-based nanomaterials, polymetallic Ni-based nanomaterials, etc. In particular, we discuss the effects of physicochemical properties, such as phases, crystallinity, morphology, composition, defects, heteroatom doping, and strain engineering, on the comprehensive performance of the abovementioned electrocatalysts, with the aim of establishing the nanostructure-function relationships of the electrocatalysts. In addition, the promising directions of Ni-based electrocatalysts for NRR are also pointed out and highlighted. The generic approach in this review may expand the frontiers of NRR and provides the inspiration for developing high-efficiently Ni-based electrocatalysts.
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  • 文章类型: Journal Article
    Phosphomannomutase 2 (PMM2) deficiency, the most frequent congenital disorder of glycosylation (PMM2-CDG), is a severe condition, which has no cure. Due to the identification of destabilizing mutations, our group aims at increasing residual activity in PMM2-CDG patients, searching for pharmacochaperones. Detailed structural knowledge of hPMM2 might help identify variants amenable to pharmacochaperoning. hPMM2 structural information is limited to one incomplete structure deposited in the Protein Databank without associated publication, which lacked ligands and residues from a crucial loop. Here we report five complete crystal structures of hPMM2, three for wild-type and two for the p.Thr237Met variant frequently found among Spanish PMM2-CDG patients, free and bound to the essential activator glucose-1,6-bisphosphate (Glc-1,6-P2 ). In the hPMM2 homodimer each subunit has a different conformation, reflecting movement of the distal core domain relative to the dimerization cap domain, supporting an opening/closing process during catalysis. Two Mg2+ ions bind to the core domain, one catalytic and one structural. In the cap domain, the site for Glc-1,6-P2 is well delineated, while a Cl− ion binding at the intersubunit interface is predicted to strengthen dimerization. Patient-found amino acid substitutions are non-homogeneously distributed throughout hPMM2, reflecting differential functional or structural importance for various parts of the protein. We classify 93 of 101 patient-reported single amino acid variants according to five potential pathogenetic mechanism affecting folding of the core and cap domains, linker-2 flexibility, dimerization, activator binding, and catalysis. We propose that ~80% and ~ 50% of the respective core and cap domains substitutions are potential candidates for pharmacochaperoning treatment. This article is protected by copyright. All rights reserved.
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  • 文章类型: Journal Article
    Vitamin B6 -dependent genetic epilepsy was recently associated to mutations in PLPBP (previously PROSC), the human version of the widespread COG0325 gene that encodes TIM-barrel-like pyridoxal phosphate (PLP)-containing proteins of unclear function. We produced recombinantly, purified and characterized human PROSC (called now PLPHP) and its six missense mutants reported in epileptic patients. Normal PLPHP is largely a monomer with PLP bound through a Schiff-base linkage. The PLP-targeting antibiotic d-cycloserine decreased the PLP-bound peak as expected for pseudo-first-order reaction. The p.Leu175Pro mutation grossly misfolded PLPHP. Mutations p.Arg241Gln and p.Pro87Leu decreased protein solubility and yield of pure PLPHP, but their pure forms were well folded, similarly to pure p.Pro40Leu, p.Tyr69Cys, and p.Arg205Gln mutants (judged from CD spectra). PLPHP stability was decreased in p.Arg241Gln, p.Pro40Leu, and p.Arg205Gln mutants (thermofluor assays). The p.Arg241Gln and p.Tyr69Cys mutants respectively lacked PLP or had a decreased amount of this cofactor. With p.Tyr69Cys there was extensive protein dimerization due to disulfide bridge formation, and PLP accessibility was decreased (judged from d-cycloserine reaction). A 3-D model of human PLPHP allowed rationalizing the effects of most mutations. Overall, the six missense mutations caused ill effects and five of them impaired folding or decreased stability, suggesting the potential of pharmacochaperone-based therapeutic approaches.
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  • 文章类型: Journal Article
    Combined D-2- and L-2-hydroxyglutaric aciduria (D/L-2-HGA) is a devastating neurometabolic disorder, usually lethal in the first years of life. Autosomal recessive mutations in the SLC25A1 gene, which encodes the mitochondrial citrate carrier (CIC), were previously detected in patients affected with combined D/L-2-HGA. We showed that transfection of deficient fibroblasts with wild-type SLC25A1 restored citrate efflux and decreased intracellular 2-hydroxyglutarate levels, confirming that deficient CIC is the cause of D/L-2-HGA. We developed and implemented a functional assay and applied it to all 17 missense variants detected in a total of 26 CIC-deficient patients, including eight novel cases, showing reduced activities of varying degrees. In addition, we analyzed the importance of residues affected by these missense variants using our existing scoring system. This allowed not only a clinical and biochemical overview of the D/L-2-HGA patients but also phenotype-genotype correlation studies.
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  • 文章类型: Journal Article
    The advent of Zn(II) metallodrugs in metabolic syndrome pathologies generates a strong challenge toward synthetic endeavors targeting well-defined, atoxic and biologically active binary/ternary species of Zn(II). Proper formulation of that metal ion\'s coordination sphere sets the stage for construction of appropriately configured Schiff ligands based on tromethamine and variably modified vanillin core components. The arising Schiff ligands react with Zn(II) in a defined stoichiometry, thereby delivering new binary Zn(II)-L species with defined physicochemical properties. Analytical (elemental), spectroscopic (FT-IR, Thermogravimetric Analysis) and crystallographic techniques attest to the distinct nature of the derived binary-ternary materials, bearing defined Zn(II):L molecular stoichiometry, variable nuclearity, charge, bulk and balance mix of hydrophilicity-hydrophobicity, thereby providing the physicochemical profile based on which biological studies could ensue. The structurally based selection of species was applied onto in vitro 3T3-L1 cultures, essentially exploring toxicity, migration, morphology, cell differentiation and maturation. The systematic effort toward comparative work on appropriately defined Zn(II) species and insulin in inducing adipogenesis reveals the salient structural features in the Schiff family of ligands configuring Zn(II) so as to promote complex formation sufficient to engage biomolecular targets during the process of initiation and maturation. Molecular targets of importance in adipogenesis were examined under the influence of Zn(II) and their expression levels suggest the structural composition that a Zn(II) ion might have to optimally pursue cell differentiation. Thus, a well-defined selection of binary Zn(II)-L species is tightly associated with the incurred bioactivity, thereby setting the stage for the development of efficient Zn(II) metallodrugs to combat Diabetes mellitus II.
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