single‐cell transcriptome sequencing

  • 文章类型: Journal Article
    口腔鳞状细胞癌(OSCC)是全球范围内主要且危险的恶性肿瘤,大多数病例源于口腔潜在恶性疾病(OPMDs)。尽管如此,阻碍OPMD进展为OSCC的有效策略仍然难以捉摸。在这项研究中,我们通过4-硝基喹啉1-氧化物诱导建立小鼠口腔癌变模型,反映了从正常口腔粘膜到OPMD的顺序转变,最终发展到OSCC。通过在OPMD阶段进行干预,我们观察到,PD1阻断联合光动力疗法(PDT)可显著缓解口腔癌变进展.单细胞转录组测序揭示了主要从OPMD到OSCC阶段发生的微环境失调,促进以Treg比例增加为特征的肿瘤促进环境,增强S100A8表达式,并降低Fib_Igfbp5(一种特定的成纤维细胞亚型)的比例,在其他人中。值得注意的是,在OPMDs阶段干预PD1阻断和PDT阻碍了促进肿瘤微环境的形成,导致Treg比例下降,S100A8表达减少,增加了Fib_Igfbp5的比例。此外,与单药治疗相比,联合治疗引发的治疗相关免疫反应更为强劲.实质上,我们的发现为减少口腔癌变的进展提供了一种新的策略。
    Oral squamous cell carcinoma (OSCC) stands as a predominant and perilous malignant neoplasm globally, with the majority of cases originating from oral potential malignant disorders (OPMDs). Despite this, effective strategies to impede the progression of OPMDs to OSCC remain elusive. In this study, we established mouse models of oral carcinogenesis via 4-nitroquinoline 1-oxide induction, mirroring the sequential transformation from normal oral mucosa to OPMDs, culminating in OSCC development. By intervening during the OPMDs stage, we observed that combining PD1 blockade with photodynamic therapy (PDT) significantly mitigated oral carcinogenesis progression. Single-cell transcriptomic sequencing unveiled microenvironmental dysregulation occurring predominantly from OPMDs to OSCC stages, fostering a tumor-promoting milieu characterized by increased Treg proportion, heightened S100A8 expression, and decreased Fib_Igfbp5 (a specific fibroblast subtype) proportion, among others. Notably, intervening with PD1 blockade and PDT during the OPMDs stage hindered the formation of the tumor-promoting microenvironment, resulting in decreased Treg proportion, reduced S100A8 expression, and increased Fib_Igfbp5 proportion. Moreover, combination therapy elicited a more robust treatment-associated immune response compared with monotherapy. In essence, our findings present a novel strategy for curtailing the progression of oral carcinogenesis.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    这项研究通过使用高通量单细胞转录组测序和先进的生物信息学分析研究TRIM28的作用及其复杂的分子机制,深入研究了去势抵抗前列腺癌(CRPC)的未开发领域。我们的全面检查揭示了动态的TRIM28表达变化,特别是在CRPC内的免疫细胞如巨噬细胞和CD8+T细胞中。与TCGA数据的相关性分析强调了TRIM28与免疫检查点表达之间的联系,并强调了其对免疫细胞数量和功能的关键影响。使用TRIM28基因敲除小鼠模型,我们确定了差异表达的基因和富集的途径,揭示TRIM28在cGAS-STING途径中的潜在调控参与。体外,实验进一步说明,前列腺癌细胞中TRIM28基因敲除通过抑制M2巨噬细胞极化和增强CD8+T细胞活性而诱导了显著的抗肿瘤免疫作用。这一有影响力的发现在原位移植肿瘤模型中得到了验证,其中TRIM28基因敲除表现出肿瘤生长的减速,减少M2巨噬细胞的比例,增强CD8+T细胞的浸润。总之,这项研究阐明了迄今为止未知的TRIM28在CRPC中的抗肿瘤免疫作用,并通过cGAS-STING信号通路揭示了其潜在的调节机制。这些发现为CRPC的免疫前景提供了新的见解,为开发创新的治疗策略提供有希望的方向。
    This study delves into the unexplored realm of castration-resistant prostate cancer (CRPC) by investigating the role of TRIM28 and its intricate molecular mechanisms using high-throughput single-cell transcriptome sequencing and advanced bioinformatics analysis. Our comprehensive examination unveiled dynamic TRIM28 expression changes, particularly in immune cells such as macrophages and CD8+ T cells within CRPC. Correlation analyses with TCGA data highlighted the connection between TRIM28 and immune checkpoint expression and emphasized its pivotal influence on the quantity and functionality of immune cells. Using TRIM28 knockout mouse models, we identified differentially expressed genes and enriched pathways, unraveling the potential regulatory involvement of TRIM28 in the cGAS-STING pathway. In vitro, experiments further illuminated that TRIM28 knockout in prostate cancer cells induced a notable anti-tumor immune effect by inhibiting M2 macrophage polarization and enhancing CD8+ T cell activity. This impactful discovery was validated in an in situ transplant tumor model, where TRIM28 knockout exhibited a deceleration in tumor growth, reduced proportions of M2 macrophages, and enhanced infiltration of CD8+ T cells. In summary, this study elucidates the hitherto unknown anti-tumor immune role of TRIM28 in CRPC and unravels its potential regulatory mechanism via the cGAS-STING signaling pathway. These findings provide novel insights into the immune landscape of CRPC, offering promising directions for developing innovative therapeutic strategies.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    转移是食管鳞状细胞癌(ESCC)治疗的最大障碍。应用单细胞RNA测序分析来研究在多个时间点从肺转移小鼠模型分离的肺转移性ESCC细胞,以表征早期转移性微环境。鉴定出类似于转移起始细胞(MIC)的小群亲本KYSE30细胞系(簇S),因为它们在肺转移部位存活并定殖。S簇和其他亚群之间的差异表达谱比较确定了一组7个转移起始特征基因(MIS),包括CD44和TACSTD2,代表ESCC中的中等收入国家。功能研究表明,MIC(CD44high)表现出显著增强的细胞存活率(抗氧化应激和凋亡),迁移,入侵,stemness,和体内肺转移能力,虽然生物信息学分析显示器官发育增强,应激反应,和神经元发育,可能重塑早期转移微环境。同时,早期转移细胞表现出准上皮-间质表型,以支持侵袭和锚定。4种MIS的多重免疫组织化学(mIHC)染色(CD44,S100A14,RHOD,和TACSTD2)在ESCC临床样本中证明了差异MIS表达评分(dMIS)可预测淋巴结转移,总生存率,和癌症血栓形成的风险。
    Metastasis is the biggest obstacle to esophageal squamous cell carcinoma (ESCC) treatment. Single-cell RNA sequencing analyses are applied to investigate lung metastatic ESCC cells isolated from pulmonary metastasis mouse model at multiple timepoints to characterize early metastatic microenvironment. A small population of parental KYSE30 cell line (Cluster S) resembling metastasis-initiating cells (MICs) is identified because they survive and colonize at lung metastatic sites. Differential expression profile comparisons between Cluster S and other subpopulations identified a panel of 7 metastasis-initiating signature genes (MIS), including CD44 and TACSTD2, to represent MICs in ESCC. Functional studies demonstrated MICs (CD44high) exhibited significantly enhanced cell survival (resistances to oxidative stress and apoptosis), migration, invasion, stemness, and in vivo lung metastasis capabilities, while bioinformatics analyses revealed enhanced organ development, stress responses, and neuron development, potentially remodel early metastasis microenvironment. Meanwhile, early metastasizing cells demonstrate quasi-epithelial-mesenchymal phenotype to support both invasion and anchorage. Multiplex immunohistochemistry (mIHC) staining of 4 MISs (CD44, S100A14, RHOD, and TACSTD2) in ESCC clinical samples demonstrated differential MIS expression scores (dMISs) predict lymph node metastasis, overall survival, and risk of carcinothrombosis.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:狭窄环境中的牙髓,与外界几乎没有联系,只有少量的免疫细胞分布,为研究细胞如何通过细胞因子对细菌感染做出反应提供了良好的研究模型。
    方法:从GEO数据集下载健康和发炎牙髓组织的单细胞转录组测序数据。基于表达矩阵分析了79种细胞因子的表达特征。
    结果:健康牙髓中两种牙髓细胞群的细胞因子分泌谱与血管形成和神经系统发育有关,以及免疫细胞调节。对于牙髓中具有干细胞活性的三种牙髓干细胞群,与神经系统发育相关的细胞因子的分泌,调节内皮细胞增殖和迁移,免疫细胞功能的调节包括我们观察到的特征。T细胞和巨噬细胞分泌的细胞因子对病原微生物的免疫储备更多。在炎症状态下,牙髓中各种类型的细胞分泌的细胞因子谱趋于相同,这样它主要抵抗病原微生物。
    结论:总结了健康和发炎牙髓中各种细胞类型在单细胞水平上的细胞因子分泌谱。
    BACKGROUND: Dental pulp in a confined environment, with little connection to the outside and only a small distribution of immune cells, provides a good research model for investigating how cells respond to bacterial infections through cytokines.
    METHODS: The data of single-cell transcriptome sequencing of healthy and inflamed pulp tissue were downloaded from the GEO dataset. The expression character of 79 cytokines was analyzed based on the expression matrix.
    RESULTS: The cytokine secretion profiles of the two populations of pulp cells in healthy dental pulp were associated with vascularization and nervous system development, as well as immune cell regulation. For the three populations of pulp stem cells with stem cell activity in the dental pulp, the secretion of cytokines related to nervous system development, regulation of endothelial cell proliferation and migration, and regulation of immune cell function comprised the characteristics that we observed. The cytokines secreted by T cells and macrophages were more of an immune reserve against pathogenic microorganisms. In the inflammatory state, the spectrum of cytokines secreted by various types of cells in the dental pulp tended to be identical, such that it mainly resisted pathogenic microorganisms.
    CONCLUSIONS: The cytokine secretion profiles of various cell types in healthy and inflamed dental pulp at the single-cell level are summarized.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

公众号