shRNA, short hairpin RNA

shRNA,短发夹 RNA
  • 文章类型: Journal Article
    头颈部鳞状细胞癌(HNSCC)的转录组分析对于理解HNSCC肿瘤的复杂生物学至关重要。MAPKAPK2或MK2是参与HNSCC进展的关键基因的mRNA转换的关键调节剂。然而,肿瘤的以MK2为中心的转录组概况尚不清楚。这项研究探讨了HNSCC与MK2在连接处的进展,以描绘肿瘤环境中MK2的生物学相关性和复杂的串扰。我们对HNSCC细胞和异种移植肿瘤进行了基于下一代测序的转录组分析,以确定MK2野生型和MK2敲低条件下的mRNA表达谱。使用基因表达测定验证了这些发现,免疫组织化学,和成绩单营业额研究。这里,我们通过注释和差异基因表达分析鉴定了一组关键的MK2调控候选基因.调节网络和途径富集揭示了它们在HNSCC发病机理中的重要性和参与。此外,基于3'-UTR的过滤识别了重要的MK2调节的下游靶基因,并通过nCounter基因表达测定对其进行了验证。最后,免疫组织化学和转录稳定性研究揭示了MK2在调节HNSCC中IGFBP2,MUC4和PRKAR2B的转录转换中的推定作用。最后,在这项研究中鉴定了MK2调节的候选基因,阐明了它们在HNSCC发病机制中的可能参与。这些基因具有作为HNSCC的诊断和治疗干预的目标的研究价值。
    Transcriptome analysis of head and neck squamous cell carcinoma (HNSCC) has been pivotal to comprehending the convoluted biology of HNSCC tumors. MAPKAPK2 or MK2 is a critical modulator of the mRNA turnover of crucial genes involved in HNSCC progression. However, MK2-centric transcriptome profiles of tumors are not well known. This study delves into HNSCC progression with MK2 at the nexus to delineate the biological relevance and intricate crosstalk of MK2 in the tumor milieu. We performed next-generation sequencing-based transcriptome profiling of HNSCC cells and xenograft tumors to ascertain mRNA expression profiles in MK2-wild type and MK2-knockdown conditions. The findings were validated using gene expression assays, immunohistochemistry, and transcript turnover studies. Here, we identified a pool of crucial MK2-regulated candidate genes by annotation and differential gene expression analyses. Regulatory network and pathway enrichment revealed their significance and involvement in the HNSCC pathogenesis. Additionally, 3\'-UTR-based filtering recognized important MK2-regulated downstream target genes and validated them by nCounter gene expression assays. Finally, immunohistochemistry and transcript stability studies revealed the putative role of MK2 in regulating the transcript turnover of IGFBP2, MUC4, and PRKAR2B in HNSCC. Conclusively, MK2-regulated candidate genes were identified in this study, and their plausible involvement in HNSCC pathogenesis was elucidated. These genes possess investigative values as targets for diagnosis and therapeutic interventions for HNSCC.
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  • 文章类型: Journal Article
    蛋白质精氨酸甲基转移酶(PRMT)的异常表达与许多脑肿瘤有关,但是PRMT1在髓母细胞瘤中的作用,最常见的恶性小儿脑瘤,仍未探索。通过检查儿科脑肿瘤收集的公开数据库,我们发现,PRMT1主要在所有小儿脑肿瘤的髓母细胞瘤中表达,PRMT1的高水平表达与髓母细胞瘤患者的低生存率相关.为了确定PRMT1在髓母细胞瘤细胞中的作用,我们建立了诱导型敲低系统,并证明PRMT1耗竭降低了髓母细胞瘤细胞的增殖并诱导了细胞凋亡。此外,二胺化合物,先前显示显示出选择性PRMT1抑制,以剂量依赖性方式抑制髓母细胞瘤细胞活力。最后,我们观察到低微摩尔浓度的有效的二胺化合物对髓母细胞瘤细胞凋亡的诱导。一起,我们的结果表明,PRMT1可能是髓母细胞瘤的可行治疗靶点.
    Aberrant expression of protein arginine methyltransferases (PRMTs) has been implicated in a number of brain tumors, but the role of PRMT1 in medulloblastoma, the most common malignant pediatric brain tumor, remains unexplored. By examining the publicly available databases of pediatric brain tumor collection, we found that PRMT1 was predominantly expressed in medulloblastomas across all the pediatric brain tumors and that the high-level expression of PRMT1 correlated with poor survival of medulloblastoma patients. To determine the role of PRMT1 in medulloblastoma cells, we established an inducible knockdown system and demonstrated that PRMT1 depletion decreased medulloblastoma cell proliferation and induced cell apoptosis. Furthermore, the diamidine compounds, previously shown to exhibit selective PRMT1 inhibition, suppressed medulloblastoma cell viability in a dose-dependent manner. Finally, we observed induction of medulloblastoma cell apoptosis by the potent diamidine compounds at low micromolar concentrations. Together, our results suggest that PRMT1 could be an actionable therapeutic target in medulloblastoma.
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  • 文章类型: Journal Article
    入侵植物薇甘菊Kunth(M.来自南美的micrantha)对生态系统的稳定性和生物多样性构成了重大威胁。然而,目前还缺乏一种有效和经济的控制薇甘菊的方法。RNA干扰(RNAi)已被广泛研究并应用于农业性状改良。喷雾诱导的基因沉默(SIGS)可以产生RNAi沉默效应,而不会对植物基因组引入可遗传的修饰,并且正在成为一种新型的植物保护非转化策略。在这项研究中,选择编码叶绿素a/b结合蛋白的基因作为RNAi的靶标,基于薇甘菊转录组的高通量测序和序列特异性的生物信息学分析。三种类型的RNAi分子,双链RNA,RNAi纳米微球,和短发夹RNA(shRNA),设计并合成了相应的短干扰RNA序列,用于构建SIGS载体,其中每个RNAi分子被转录并提取以喷洒到薇甘菊叶上。而水处理的对照叶仍然是绿色的,用RNAi分子处理的叶子变黄并最终枯萎。实时定量PCR显示,与对照组相比,RNAi处理组的靶基因表达水平明显降低,表明所有三种类型的RNAi除草剂都有效地沉默了内源靶基因,这对薇甘菊的生长至关重要。我们还发现shRNA显示出比其他两种分子更好的沉默效率。一起来看,我们的研究成功设计了三种类型的基于RNAi的除草剂,这些除草剂特异性沉默了内源性靶基因并控制了薇甘菊的生长。此外,我们确定了一个编码叶绿素a/b结合蛋白的基因家族,该蛋白对薇甘菊的生长和发育很重要,可以作为控制薇甘菊传播的潜在靶标。
    The invasive plant Mikania micrantha Kunth (M. micrantha) from South America poses a significant threat to the stability and biodiversity of ecosystems. However, an effective and economical method to control M. micrantha is still lacking. RNA interference (RNAi) has been widely studied and applied in agriculture for trait improvement. Spray-induced gene silencing (SIGS) can produce RNAi silencing effects without introducing heritable modifications to the plant genome and is becoming a novel nontransformation strategy for plant protection. In this study, the genes encoding chlorophyll a/b-binding proteins were selected as targets of RNAi, based on high-throughput sequencing of M. micrantha transcriptome and bioinformatic analyses of sequence specificity. Three types of RNAi molecules, double-stranded RNA, RNAi nanomicrosphere, and short hairpin RNA (shRNA), with their corresponding short interfering RNA sequences were designed and synthesized for SIGS vector construction, from which each RNAi molecule was transcribed and extracted to be sprayed on M. micrantha leaves. Whereas water-treated control leaves remained green, leaves treated with RNAi molecules turned yellow and eventually wilted. Quantitative real-time PCR showed that the expression levels of target genes were significantly reduced in the RNAi-treated groups compared with those of the control, suggesting that all three types of RNAi herbicides effectively silenced the endogenous target genes, which are essential for the growth of M. micrantha. We also found that shRNA showed better silencing efficiency than the other two molecules. Taken together, our study successfully designed three types of RNAi-based herbicides that specifically silenced endogenous target genes and controlled the growth of M. micrantha. Moreover, we identified a gene family encoding chlorophyll a/b-binding proteins that is important for the growth and development of M. micrantha and could serve as potential targets for controlling the spread of M. micrantha.
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  • 文章类型: Journal Article
    Rescuing cells from stress damage emerges a potential therapeutic strategy to combat myocardial infarction. Protocatechuic aldehyde (PCA) is a major phenolic acid in Chinese herb Danshen (Salvia miltiorrhiza root). This study investigated whether PCA regulated nuclear pyruvate kinase isoform M2 (PKM2) function to protect cardiomyocytes. In rats subjected to isoprenaline, PCA attenuated heart injury and protected cardiomyocytes from apoptosis. Through DARTS and CETSA assays, we identified that PCA bound and promoted PKM2 nuclear translocation in cardiomyocytes exposed to oxygen/glucose deprivation (OGD). In the nucleus, PCA increased the binding of PKM2 to β-catenin via preserving PKM2 acetylation, and the complex, in cooperation with T-cell factor 4 (TCF4), was required for transcriptional induction of genes encoding anti-apoptotic proteins, contributing to rescuing cardiomyocyte survival. In addition, PCA ameliorated mitochondrial dysfunction and prevented mitochondrial apoptosis dependent on PKM2. Consistently, PCA increased the binding of PKM2 to β-catenin, improved heart contractive function, normalized heart structure and attenuated oxidative damage in mice subjected to artery ligation, but the protective effects were lost in Pkm2-deficient heart. Together, we showed that PCA regulated nuclear PKM2 function to rescue cardiomyocyte survival via β-catenin/TCF4 signaling cascade, suggesting the potential of pharmacological intervention of PKM2 shuttle to protect the heart.
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  • 文章类型: Journal Article
    溶酶体的完整性对肿瘤细胞的存活至关重要。我们证明了LW-218,一种合成类黄酮,在血液系统恶性肿瘤中诱导溶酶体快速增大并伴有溶酶体膜通透性。LW-218诱导的溶酶体损伤和溶酶体依赖性细胞死亡由组织蛋白酶D介导,由于组织蛋白酶D或溶酶体碱化剂的消耗可以抑制溶酶体损伤和细胞凋亡,可以改变组织蛋白酶的活性。食欲不振,LW-218处理后开始进行细胞自救,并与转录因子EB的钙释放和核易位相关。LW-218处理增强了细胞内钙螯合剂可以抑制的自噬相关基因的表达。持续暴露于LW-218会耗尽溶酶体能力,从而抑制正常的自噬。LW-218诱导的溶酶体扩大和损伤是由LW-218和NPC细胞内胆固醇转运蛋白1相互作用引起的溶酶体膜上胆固醇异常沉积引起的。此外,LW-218在体内抑制白血病细胞生长。因此,说明了整体溶酶体功能在细胞抢救和死亡中的必要影响。
    The integrity of lysosomes is of vital importance to survival of tumor cells. We demonstrated that LW-218, a synthetic flavonoid, induced rapid lysosomal enlargement accompanied with lysosomal membrane permeabilization in hematological malignancy. LW-218-induced lysosomal damage and lysosome-dependent cell death were mediated by cathepsin D, as the lysosomal damage and cell apoptosis could be suppressed by depletion of cathepsin D or lysosome alkalization agents, which can alter the activity of cathepsins. Lysophagy, was initiated for cell self-rescue after LW-218 treatment and correlated with calcium release and nuclei translocation of transcription factor EB. LW-218 treatment enhanced the expression of autophagy-related genes which could be inhibited by intracellular calcium chelator. Sustained exposure to LW-218 exhausted the lysosomal capacity so as to repress the normal autophagy. LW-218-induced enlargement and damage of lysosomes were triggered by abnormal cholesterol deposition on lysosome membrane which caused by interaction between LW-218 and NPC intracellular cholesterol transporter 1. Moreover, LW-218 inhibited the leukemia cell growth in vivo. Thus, the necessary impact of integral lysosomal function in cell rescue and death were illustrated.
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  • 文章类型: Journal Article
    Classical osteogenesis imperfecta (OI) is an inherited rare brittle bone disease caused by dominant mutations in the COL1A1 or COL1A2 genes, encoding for the α chains of collagen type I. The definitive cure for the disease will require a gene therapy approach, aimed to correct or suppress the mutant allele. Interestingly, individuals lacking α2(I) chain and synthetizing collagen α1(I)3 homotrimers do not show bone phenotype, making appealing a bone specific COL1A2 silencing approach for OI therapy. To this aim, three different Col1a2-silencing RNAs (siRNAs), -3554, -3825 and -4125, selected at the 3\'-end of the murine Col1a2 transcript were tested in vitro and in vivo. In murine embryonic fibroblasts Col1a2-siRNA-3554 was able to efficiently and specifically target the Col1a2 mRNA and to strongly reduce α2(I) chain expression. Its efficiency and specificity were also demonstrated in primary murine osteoblasts, whose mineralization was preserved. The efficiency of Col1a2-siRNA-3554 was proved also in vivo. Biphasic calcium phosphate implants loaded with murine mesenchymal stem cells were intramuscularly transplanted in nude mice and injected with Col1a2-siRNA-3554 three times a week for three weeks. Collagen α2 silencing was demonstrated both at mRNA and protein level and Masson\'s Trichrome staining confirmed the presence of newly formed collagen matrix. Our data pave the way for further investigation of Col1a2 silencing and siRNA delivery to the bone tissue as a possible strategy for OI therapy.
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  • 文章类型: Journal Article
    This study was aimed to design the first dual-target small-molecule inhibitor co-targeting poly (ADP-ribose) polymerase-1 (PARP1) and bromodomain containing protein 4 (BRD4), which had important cross relation in the global network of breast cancer, reflecting the synthetic lethal effect. A series of new BRD4 and PARP1 dual-target inhibitors were discovered and synthesized by fragment-based combinatorial screening and activity assays that together led to the chemical optimization. Among these compounds, 19d was selected and exhibited micromole enzymatic potencies against BRD4 and PARP1, respectively. Compound 19d was further shown to efficiently modulate the expression of BRD4 and PARP1. Subsequently, compound 19d was found to induce breast cancer cell apoptosis and stimulate cell cycle arrest at G1 phase. Following pharmacokinetic studies, compound 19d showed its antitumor activity in breast cancer susceptibility gene 1/2 (BRCA1/2) wild-type MDA-MB-468 and MCF-7 xenograft models without apparent toxicity and loss of body weight. These results together demonstrated that a highly potent dual-targeted inhibitor was successfully synthesized and indicated that co-targeting of BRD4 and PARP1 based on the concept of synthetic lethality would be a promising therapeutic strategy for breast cancer.
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  • 文章类型: Journal Article
    肝胰岛素抵抗的悖论描述了肝脏在抑制糖异生同时维持脂质合成方面无法对生物能激素做出反应。这里,我们报道了糖尿病小鼠肝脏中miR-192-3p的缺乏及其在减轻肝脏脂肪变性中的作用。
    因为常规的pre-microRNA(miRNA)茎环过表达仅增强引导链(即miR-192-5p)表达,我们采用了人造AAV(DJ)指导,RNAPolIII启动子驱动的miRNA发夹构建体在肝脏中星形链特异性过表达。在原代肝细胞中评估肝脂肪变性和胰岛素抵抗标志物,患有糖尿病的老鼠,和过量摄入碳水化合物的小鼠。
    肝脏中miR-192-3p的功能丧失加剧了糖尿病小鼠或果糖消耗过多的野生型小鼠的肝微泡脂肪变性和胰岛素抵抗。miR-192-3p的肝脏特异性过表达在这些小鼠模型中有效地阻止了肝脂肪变性并改善了胰岛素抵抗。同样,过表达miR-192-3p的肝细胞表现出改善的脂质积累,伴随着脂肪生成和脂质积累相关转录物的减少。机械上,糖皮质激素受体(GCR,也称为核受体亚家族3,C组,成员1[NR3C1])被证明受miR-192-3p负调控。miR-192-3p对减轻微泡脂肪变性的作用通过NR3C1的再激活而消除。
    星链miR-192-3p是一种被破坏的甘油酯调节剂,通过阻断肝脏GCR信号传导来控制肝脏中的脂肪积累和胰岛素敏感性;该miRNA可能作为糖尿病和脂肪肝疾病共同迁移的潜在治疗选择。
    星链microRNA(miRNA)物种的潜在调节活性已被大大低估。在这项研究中,我们研究了被忽视的星链miRNA(miR-192-3p)在调节糖尿病小鼠和过量碳水化合物摄入小鼠肝脏中的肝脂肪变性和胰岛素信号中的作用和机制.
    UNASSIGNED: The paradox of hepatic insulin resistance describes the inability for liver to respond to bioenergetics hormones in suppressing gluconeogenesis whilst maintaining lipid synthesis. Here, we report the deficiency of miR-192-3p in the livers of mice with diabetes and its role in alleviating hepatic steatosis.
    UNASSIGNED: As conventional pre-microRNA (miRNA) stem-loop overexpression only boosts guiding strand (i.e. miR-192-5p) expression, we adopted an artificial AAV(DJ)-directed, RNA Pol III promoter-driven miRNA hairpin construct for star-strand-specific overexpression in the liver. Liver steatosis and insulin resistance markers were evaluated in primary hepatocytes, mice with diabetes, and mice with excessive carbohydrate consumption.
    UNASSIGNED: Functional loss of miR-192-3p in liver exacerbated hepatic micro-vesicular steatosis and insulin resistance in either mice with diabetes or wild-type mice with excessive fructose consumption. Liver-specific overexpression of miR-192-3p effectively halted hepatic steatosis and ameliorated insulin resistance in these mice models. Likewise, hepatocytes overexpressing miR-192-3p exhibited improved lipid accumulation, accompanied with decreases in lipogenesis and lipid-accumulation-related transcripts. Mechanistically, glucocorticoid receptor (GCR, also known as nuclear receptor subfamily 3, group C, member 1 [NR3C1]) was demonstrated to be negatively regulated by miR-192-3p. The effect of miR-192-3p on mitigating micro-vesicular steatosis was ablated by the reactivation of NR3C1.
    UNASSIGNED: The star strand miR-192-3p was an undermined glycerolipid regulator involved in controlling fat accumulation and insulin sensitivity in liver through blockade of hepatic GCR signalling; this miRNA may serve as a potential therapeutic option for the common co-mobility of diabetic mellitus and fatty liver disease.
    UNASSIGNED: The potential regulatory activity of star strand microRNA (miRNA) species has been substantially underestimated. In this study, we investigate the role and mechanism of an overlooked star strand miRNA (miR-192-3p) in regulating hepatic steatosis and insulin signalling in the livers of mice with diabetes and mice under excessive carbohydrate consumption.
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  • 文章类型: Journal Article
    类风湿性关节炎(RA)是最常见的复杂多因素关节相关自身免疫性炎症性疾病,病因不明,心血管风险增加。RA的临床特征是滑膜炎症,自身抗体生产,和软骨/骨骼破坏,心血管,肺和骨骼疾病。促炎细胞因子如IL-1、IL-6、IL-8和IL-10负责诱导RA患者的炎症。缺点,如疗效差,更高的剂量,频繁的管理,响应性低,并且较高的成本和严重的副作用与RA治疗的常规剂型有关。纳米药物最近对RA的治疗越来越感兴趣,研究人员还致力于开发各种抗炎药纳米制剂,以帮助主动/被动地靶向发炎部位,从而为RA提供有效的治疗方案。纳米制剂的表面积和纳米级尺寸的改变引起有益的物理和化学性质以获得更好的药理学活性。这些载药纳米制剂可以增强水溶性差的药物的溶解度,提高了生物利用度,提供可靶向性,并可以提高治疗活性。在这个方案中,本综述的重点是新型纳米颗粒制剂(纳米颗粒,纳米乳液,固体脂质纳米粒,纳米胶束,和纳米胶囊)用于治疗RA。最近的进展,如siRNA,还讨论了用于RA治疗的基于肽和靶向的纳米颗粒系统。特别强调了病理生理学,患病率和症状对RA的发展。
    Rheumatoid arthritis (RA) is the most common complex multifactorial joint related autoimmune inflammatory disease with unknown etiology accomplished with increased cardiovascular risks. RA is characterized by the clinical findings of synovial inflammation, autoantibody production, and cartilage/bone destruction, cardiovascular, pulmonary and skeletal disorders. Pro-inflammatory cytokines such as IL-1, IL-6, IL-8, and IL-10 were responsible for the induction of inflammation in RA patients. Drawbacks such as poor efficacy, higher doses, frequent administration, low responsiveness, and higher cost and serious side effects were associated with the conventional dosage forms for RA treatment. Nanomedicines were recently gaining more interest towards the treatment of RA, and researchers were also focusing towards the development of various anti-inflammatory drug loaded nanoformulations with an aid to both actively/passively targeting the inflamed site to afford an effective treatment regimen for RA. Alterations in the surface area and nanoscale size of the nanoformulations elicit beneficial physical and chemical properties for better pharmacological activities. These drug loaded nanoformulations may enhances the solubility of poorly water soluble drugs, improves the bioavailability, affords targetability and may improve the therapeutic activity. In this regimen, the present review focus towards the novel nanoparticulate formulations (nanoparticles, nanoemulsions, solid lipid nanoparticles, nanomicelles, and nanocapsules) utilized for the treatment of RA. The recent advancements such as siRNA, peptide and targeted based nanoparticulate systems for RA treatment were also discussed. Special emphasis was provided regarding the pathophysiology, prevalence and symptoms towards the development of RA.
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  • 文章类型: Journal Article
    目的:降钙素基因相关肽(CGRP)在偏头痛的病理生理过程中起重要作用。CGRP主要通过激活由3种蛋白质组成的受体起作用:降钙素受体样受体(CLR),受体活性修饰蛋白1(RAMP1),和受体组分蛋白(RCP)。我们测试了以下假设:该CGRP受体的两个关键成分CLR和RCP的蛋白质水平存在性别差异。
    方法:我们使用特异性抗体来评估雄性和雌性大鼠三叉神经尾核(SpVc)和上颈脊髓中CLR和RCP的基线蛋白水平。我们还测试了是否敲低SpVc中RCP表达的操作,使用短发夹RNA(shRNA)的局部介导基因转移,改善脑膜化学有害刺激引起的颅内偏头痛样疼痛动物模型的疼痛。为了评估疼痛,我们使用了持续疼痛的测试(大鼠面部表情测试和冻结行为)以及面部机械性超敏反应和异常性疼痛的测试。
    结果:在SpVc和上颈索中,雄性和雌性动物之间的CLR水平没有差异(p>0.11)。然而,与雄性动物相比,雌性动物表现出更高的RCP基线水平(高达3倍)(p<0.002).SpVc中RCP表达的降低减轻了由脑膜的化学有害刺激引起的机械性面部异常性疼痛,但对雌性和雄性动物持续的疼痛行为影响不大。
    结论:RCP是CGRP受体的组成部分,可能在介导CGRP在伤害性刺激脑膜后引起的中枢敏化中起关键作用。RCP在SpVc和上颈髓中的表达是性别二态的,在女性中表达水平较高。这种二态现象可能与女性偏头痛的发生率增加有关,这一假设应在将来进行检验。
    OBJECTIVE: Calcitonin gene-related peptide (CGRP) plays an important role in migraine pathophysiology. CGRP acts primarily by activating a receptor composed of 3 proteins: calcitonin receptor-like receptor (CLR), receptor activity-modifying protein 1 (RAMP1), and receptor component protein (RCP). We tested the hypothesis that sex differences exist in protein levels of two key components of this CGRP receptor: CLR and RCP.
    METHODS: We used specific antibodies to assess baseline protein levels of CLR and RCP in the spinal trigeminal nucleus caudalis (SpVc) and upper cervical spinal cord of both male and female rats. We also tested if manipulations that knock-down the expression of RCP in SpVc, using locally-mediated gene transfer of short hairpin RNA (shRNA), ameliorate pain in an animal model of intracranial migraine-like pain induced by chemical noxious stimulation of the meninges. To assess pain, we used tests of ongoing pain (rat face grimace test and freezing behavior) and tests of facial mechanical hypersensitivity and allodynia.
    RESULTS: There was no difference in CLR levels between male and female animals (p > 0.11) in SpVc and the upper cervical cord. However, female animals exhibited greater baseline levels of RCP (up to 3-fold higher) compared to males (p < 0.002). The knock-down of RCP expression in SpVc attenuated mechanical facial allodynia induced by chemical noxious stimulation of the meninges, but had little effect on ongoing pain behaviors in female and male animals.
    CONCLUSIONS: RCP is an integral component of the CGRP receptor and may play a key role in mediating CGRP induced central sensitization after noxious stimulation of the meninges. RCP expression in the SpVc and upper cervical cord is sexually dimorphic, with higher levels of expression in females. This dimorphism may be related to the increased incidence of migraines in females-a hypothesis that should be tested in the future.
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