rotting wood

腐烂的木材
  • 文章类型: Journal Article
    从腐烂的木材和在巴西亚马逊雨林不同地点收集的passalid甲虫画廊中获得了四种酵母分离物。这种酵母产生未缀合的尿囊类asci,每个都有一个带有弯曲末端的细长子囊孢子。内部转录的间隔区5.8S区和大亚基核糖体RNA(rRNA)基因的D1/D2结构域的序列分析表明,这些分离株代表了Spathaspora属的一种新物种。新物种在系统发育上与包含Spathasporaarborariae和Spathasporasuhii的亚进化枝相关。基于1884个单拷贝直向同源物的一组Spathaspora物种的系统基因组分析,这些物种的全基因组序列是可用的,证实了由菌株UFMG-CM-Y285代表的新物种在系统发育上接近Sp。Arborariae.名称Spatasporamarinasilvaesp。11月。被提议容纳新物种。Sp的整体型。marinasilvae是CBS13467T(MycoBank852799)。新物种能够积累木糖醇并从d-木糖生产乙醇,Spathaspora属几种常见的生物技术特征。
    Four yeast isolates were obtained from rotting wood and galleries of passalid beetles collected in different sites of the Brazilian Amazonian Rainforest in Brazil. This yeast produces unconjugated allantoid asci each with a single elongated ascospore with curved ends. Sequence analysis of the internal transcribed spacer-5.8 S region and the D1/D2 domains of the large subunit ribosomal RNA (rRNA) gene showed that the isolates represent a novel species of the genus Spathaspora. The novel species is phylogenetically related to a subclade containing Spathaspora arborariae and Spathaspora suhii. Phylogenomic analysis based on 1884 single-copy orthologs for a set of Spathaspora species whose whole genome sequences are available confirmed that the novel species represented by strain UFMG-CM-Y285 is phylogenetically close to Sp. arborariae. The name Spathaspora marinasilvae sp. nov. is proposed to accommodate the novel species. The holotype of Sp. marinasilvae is CBS 13467 T (MycoBank 852799). The novel species was able to accumulate xylitol and produce ethanol from  d-xylose, a trait of biotechnological interest common to several species of the genus Spathaspora.
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  • 文章类型: Journal Article
    从巴西和哥伦比亚收集的腐烂木材样品中获得了新物种的三种酵母分离物候选物。巴西分离株与哥伦比亚分离株的不同之处在于D1/D2和小亚基(SSU)序列中的每个序列中的一个核苷酸取代。三个分离株的内部转录间隔区(ITS)和翻译延伸因子1-α基因序列相同。系统发育分析表明,该新物种属于Ogataea属。这种新物种与纳米念珠菌和嗜硝态念珠菌在系统发育上相关。新物种与C.nanaspora的区别在于七个核苷酸和两个indel,和来自D1/D2序列中的17个核苷酸和4个来自硝态芽孢杆菌的indel。这三个物种的ITS序列相差超过30个核苷酸。对SSU和翻译延伸因子1-α基因序列的分析还表明,这些分离株代表了Ogataea属的新物种。与大多数Ogataea物种不同,这些分离物没有吸收甲醇作为唯一的碳源。名称Ogataeanonmethanolicasp。11月。建议容纳这些分离株。非甲醇的整型为CBS13485T。MycoBank编号为MB851195。
    Three yeast isolate candidates for a novel species were obtained from rotting wood samples collected in Brazil and Colombia. The Brazilian isolate differs from the Colombian isolates by one nucleotide substitution in each of the D1/D2 and small subunit (SSU) sequences. The internal transcribed spacer (ITS) and translation elongation factor 1-α gene sequences of the three isolates were identical. A phylogenetic analysis showed that this novel species belongs to the genus Ogataea. This novel species is phylogenetically related to Candida nanaspora and Candida nitratophila. The novel species differs from C. nanaspora by seven nucleotides and two indels, and by 17 nucleotides and four indels from C. nitratophila in the D1/D2 sequences. The ITS sequences of these three species differ by more than 30 nucleotides. Analyses of the sequences of the SSU and translation elongation factor 1-α gene also showed that these isolates represent a novel species of the genus Ogataea. Different from most Ogataea species, these isolates did not assimilate methanol as the sole carbon source. The name Ogataea nonmethanolica sp. nov. is proposed to accommodate these isolates. The holotype of Ogataea nonmethanolica is CBS 13485T. The MycoBank number is MB 851195.
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  • 文章类型: Journal Article
    从宝天曼自然保护区收集的腐烂木材中分离出两种酵母菌株(NYNU211162和NYNU211275),河南省,中国中部。对大亚基(LSU)rRNA基因的D1/D2结构域和内部转录间隔区(ITS)区域的系统发育分析显示,这些菌株代表了Spencermartinsiella属中的系统发育上不同的物种。这个名字叫Spencermartinsiellahenanensisfa。,sp.11月。建议对该物种使用holotypeCICC33543T(MycobankMB851142)。美国河南。11月。与D1/D2结构域中最接近的已知物种S.europaeaNCAIMY.01817T仅有3nt(〜0.5%)取代,但通过33nt(~6%)取代,34nt(~3.8%)取代,在ITS区和部分TEF1、COXII和RPB2基因中有30个nt(~5.6%)取代和75个nt(~9.9%)取代。此外,美国河南。11月。可以通过吸收菊粉的能力在生理上与S.europaea区分开,无法吸收乙胺和尸胺,在30°C下不能生长
    Two yeast strains (NYNU 211162 and NYNU 211275) were isolated from rotting wood collected in the Baotianman Nature Reserve, Henan Province, central China. Phylogenetic analysis of the D1/D2 domain of the large subunit (LSU) rRNA gene and the internal transcribed spacer (ITS) region revealed that the strains represent a phylogenetically distinct species within the genus Spencermartinsiella. The name Spencermartinsiella henanensis fa., sp. nov. is proposed for this species with holotype CICC 33543T (Mycobank MB 851142). S. henanensis sp. nov. differed by only 3 nt (~0.5 %) substitutions from the closest known species S. europaea NCAIM Y.01817T in the D1/D2 domain, but by 33 nt (~6 %) substitutions, 34 nt (~3.8 %) substitutions, 30 nt (~5.6 %) substitutions and 75 nt (~9.9 %) substitutions in the ITS region and the partial TEF1, COXII and RPB2 genes. Additionally, S. henanensis sp. nov. can be physiologically distinguished from S. europaea by its ability to assimilate inulin, inability to assimilate ethylamine and cadaverine, and incapability of growth at 30 °C.
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  • 文章类型: Journal Article
    从云南省西双版纳热带雨林中收集的腐烂木材样品中分离出两株双极出芽酵母菌种(NYNU181072和NYNU181083),西南公关中国。根据大亚基(LSU)rRNA的D1/D2结构域的表型特征和系统发育分析结果,内部转录间隔区(ITS)和肌动蛋白(ACT1)基因,发现这两个菌株代表了Hanseniasspora属的一个新物种,Hanseniasporamenglaensisf.a.,sp.11月。(holotypeCICC33364T;MycoBankMB847437)被提议。在系统发育树中,H.menglaensissp.11月。与Hanseniassporalindneri关系密切,Hanseniassporamolemarum,汉森孢子和汉森孢子。H.menglaensissp.11月。不同于H.Lindneri,最密切相关的已知物种,通过D1/D2结构域中的1.2%取代,在ITS区域有2.5%的取代,在ACT1基因中有5.4%的取代,分别。生理学上,H.menglaensissp.11月。也可以通过其吸收d-葡萄糖酸盐的能力与H.lindneri区分开。
    Two apiculate strains (NYNU 181072 and NYNU 181083) of a bipolar budding yeast species were isolated from rotting wood samples collected in Xishuangbanna Tropical Rainforest in Yunnan Province, southwest PR China. On the basis of phenotypic characteristics and the results of phylogenetic analysis of the D1/D2 domain of the large subunit (LSU) rRNA, internal transcribed spacer (ITS) region and the actin (ACT1) gene, the two strains were found to represent a single novel species of the genus Hanseniaspora, for which the name Hanseniaspora menglaensis f.a., sp. nov. (holotype CICC 33364T; MycoBank MB 847437) is proposed. In the phylogenetic tree, H. menglaensis sp. nov. showed a close relationship with Hanseniaspora lindneri, Hanseniaspora mollemarum, Hanseniaspora smithiae and Hanseniaspora valbyensis. H. menglaensis sp. nov. differed from H. lindneri, the most closely related known species, by 1.2 % substitutions in the D1/D2 domain, 2.5 % substitutions in the ITS region and 5.4 % substitutions in the ACT1 gene, respectively. Physiologically, H. menglaensis sp. nov. can also be distinguished from H. lindneri by its ability to assimilate d-gluconate.
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  • 文章类型: Journal Article
    从两个巴西亚马逊生物群落中收集的腐烂木材中回收了4种Spathaspora物种。分离株产生了未结合的尿囊体asci,其单个细长的子囊孢子具有弯曲的末端。对ITS-5.8S区域和大亚基rRNA基因的D1/D2结构域的序列分析表明,这些分离株代表了两种不同的新型Spathaspora物种,与Sp相关的系统发育。boniae.从帕拉州亚马逊森林的两个不同地点收集的腐烂木材中获得了两个分离物。名称Spatasporabrunopereirasp。11月。建议容纳这些分离株。Spathasporabrunopereirasp的整体型。11月。是CBS16119T(MycoBankMB846672)。其他两个分离株是从Tocantins州的亚马逊森林和Cerrado生态系统之间的过渡区域获得的。名称Spatasporadomphillipsiisp.11月。是为这个新物种而提出的。Spathasporadomphillipsiisp。11月。是CBS14229T(MycoBankMB846697)。两种物种都能够将d-木糖转化为乙醇和木糖醇,具有生物技术应用的特征。
    Four isolates of Spathaspora species were recovered from rotting wood collected in two Brazilian Amazonian biomes. The isolates produced unconjugated allantoid asci with a single elongated ascospore with curved ends. Sequence analysis of the ITS-5.8S region and the D1/D2 domains of the large subunit rRNA gene showed that the isolates represent two different novel Spathaspora species, phylogenetically related to Sp. boniae. Two isolates were obtained from rotting wood collected in two different sites of the Amazonian forest in the state of Pará. The name Spathaspora brunopereirae sp. nov. is proposed to accommodate these isolates. The holotype of Spathaspora brunopereirae sp. nov. is CBS 16119T (MycoBank MB846672). The other two isolates were obtained from a region of transition between the Amazonian forest and the Cerrado ecosystem in the state of Tocantins. The name Spathaspora domphillipsii sp. nov. is proposed for this novel species. The holotype of Spathaspora domphillipsii sp. nov. is CBS 14229T (MycoBank MB846697). Both species are able to convert d-xylose into ethanol and xylitol, a trait with biotechnological applications.
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  • 文章类型: Journal Article
    从云南省九溪山森林公园的腐烂木材样品中分离出两株新型子囊酵母,中国西南。两种菌株都在持久的腹水中形成一个或两个球形子囊孢子。内部转录间隔区(ITS)区(ITS1-5.8S-ITS2)和大亚基rRNA基因的D1/D2结构域的串联序列的系统发育分析显示,新菌株代表了属于Torulaspora属的系统发育上不同的物种。这个新物种不同于最近的已知物种的类型菌株,Torulassporanypae和Torulassporamaleeae,D1/D2结构域中0.9和1.2%的核苷酸取代,ITS区域中5.3和6%的核苷酸取代,分别。在同化核糖醇的能力方面,该新物种也可以与T.nypae和M.maleeae区分开,琥珀酸盐和柠檬酸盐,以及它在37℃生长的能力九溪Torulasporasp。的物种名称。11月。提出了完整型CBS16004T(MycobankMB844535)。
    Two strains of a novel ascomycetous yeast species were isolated from rotting wood samples collected in Jiuxi Mountain Forest Park in Yunnan Province, southwest China. Both strains formed one or two spherical ascospores in persistent asci. Phylogenetic analysis of the concatenated sequences of the internal transcribed spacer (ITS) region (ITS1-5.8S-ITS2) and the D1/D2 domain of the large subunit rRNA gene revealed that the novel strains represented a phylogenetically distinct species belonging to the genus Torulaspora. This novel species differed from the type strains of the closest known species, Torulaspora nypae and Torulaspora maleeae, by 0.9 and 1.2 % nucleotide substitutions in the D1/D2 domain and 5.3 and 6 % nucleotide substitutions in the ITS region, respectively. The novel species can also be distinguished from T. nypae and T. maleeae in terms of the ability to assimilate ribitol, succinate and citrate, and its ability to grow at 37 °C. The species name of Torulaspora jiuxiensis sp. nov. is proposed with holotype CBS 16004T (Mycobank MB 844535).
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  • 文章类型: Journal Article
    Six yeast isolates were obtained from rotting wood samples in Brazil and frass of a cerambycid beetle larva in French Guiana. Sequence analysis of the ITS-5.8S region and the D1/D2 domains of the large subunit rRNA gene showed that the isolates represent a novel species of Cyberlindnera. This novel species is related to Cyberlindnera japonica, Cyberlindnera xylosilytica, Candida easanensis and Candida maesa. It is heterothallic and produces asci with two or four hat-shaped ascospores. The name Cyberlindnera dasilvae sp. nov. is proposed to accommodate the novel species. The holotype of Cy. dasilvae is CBS 16129T and the designated paratype is CBS 16584. The MycoBank number is 838252. All isolates of Cy. dasilvae were able to convert xylose into xylitol with maximum xylitol production within 60 and 72 h. The isolates produced xylitol with values ranging from 12.61 to 31.79 g l-1 in yeast extract-peptone-xylose medium with 5% xylose. When the isolates were tested in sugarcane bagasse hydrolysate containing around 35-38 g l-1d-xylose, isolate UFMG-CM-Y519 showed maximum xylitol production.
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  • 文章类型: Journal Article
    Four isolates of two novel ascosporogenous species belonging to the clade Starmera were obtained from cactus tissues and rotting wood in Brazil. Results of analyses of the sequences of the ITS and D1/D2 domains of the large subunit rRNA gene indicated that the two isolates of the cactophilic species are related to Starmera caribaea and Starmera pilosocereana, yeasts that are associated with cacti and require an organic source of sulfur for growth. We propose the novel species Starmera foglemanii sp. nov. (CBS 16113T; MycoBank number: MB 834400) to accommodate these isolates. The other two isolates are phylogenetically related to Candida dendrica, Candida laemsonensis and Candida berthetii, also in the Starmera clade. The novel species name Starmera ilhagrandensis sp. nov. (CBS 16316T; MycoBank number: MB 834402) is proposed for this species.
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  • 文章类型: Journal Article
    从西双版纳热带雨林收集的腐烂木材样品中分离出5株酵母菌株,云南省,公关中国。大亚基rRNA基因D1/D2结构域的系统发育分析表明,这些菌株代表了Kazachstania属的两个新物种。Kazachstaniajinghonggensissp.11月。每个子囊产生一到两个球形子囊孢子,与Kazachstanialodderae和Kazachstaniaspencerorum关系最密切。Kazachstaniajinghonggensissp.11月。与后两个物种的类型菌株不同,在D1/D2结构域中有13-24个取代,在ITS区域中有39-56个取代。Kazachstaniamenglunensisf.a.,sp.11月。是Kazachstaniajiainica分支的成员,但是在各种孢子形成培养基上没有观察到子囊孢子的形成。孟鲁门哈萨克斯坦。11月。与该亚分化的其他成员不同,D1/D2结构域有23-26个取代,ITS区域有67个以上的取代。Kazachstaniajinghongensissp。11月。是NYNU17944(CBS15232)和Kazachstaniamenglunensissp。11月。是纽约大学18913(CBS16054)。
    Five yeast strains were isolated from rotting wood samples collected in the Xishuangbanna Tropical Rainforest, Yunnan Province, PR China. Phylogenetic analysis of the D1/D2 domains of the large subunit rRNA gene indicated that these strains represent two novel species of the genus Kazachstania. Kazachstania jinghongensis sp. nov. produces one to two spherical ascospores per ascus, and is most closely related to Kazachstania lodderae and Kazachstania spencerorum. Kazachstania jinghongensis sp. nov. differed from the type strains of the two latter species by 13-24 substitutions in the D1/D2 domains and by 39-56 substitutions in the ITS regions. Kazachstania menglunensis f.a., sp. nov. is a member of the Kazachstania jiainica subclade, but the formation of ascospores was not observed on various sporulation media. Kazachstania menglunensis sp. nov. differed from other members of the subclade by 23-26 substitutions in the D1/D2 domains and by more than 67 substitutions in the ITS regions. The holotype of Kazachstania jinghongensis sp. nov. is NYNU 17944 (CBS 15232) and the holotype of Kazachstania menglunensis sp. nov. is NYNU 18913 (CBS 16054).
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  • 文章类型: Journal Article
    Three strains of a novel yeast species were isolated from rotting wood in the Xishuangbanna Tropical Rainforest, Yunnan Province, PR China. Sequence analysis of the D1/D2 domains of the large subunit rRNA gene and the internal transcribed spacer (ITS) regions showed that the novel species represents a member of the genus Saturnispora. It differed from its closest known species, Saturnispora sekii CBS 10931T, by 1.3 % nucleotide substitutions in the D1/D2 domains and by 2.2 % nucleotide substitutions in the ITS regions, respectively. In contrast to Saturnispora sekii, the novel yeast species was unable to assimilate glycerol, dl-lactate, succinate and citrate, and grow at 37 °C. The name Saturnispora galanensis sp. nov. is proposed to accommodate these strains, with NYNU 1797 as the holotype.
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