purification and characterization

纯化和表征
  • 文章类型: Journal Article
    New xylanase (XylUS570) was purified from the Bacillus pumilus US570 strain. It has a molecular mass of about 232 kDa. This is the first report on the highest molecular weight monomeric xylanase produced by bacteria. The optimum pH and temperature recorded for enzyme activity were 7 and 55 °C, respectively with a half-life time of 10 min at 60 °C. At 37 °C, the enzyme retains more than 50% of its activity at a pH ranging from 6 to 9.5 for 24 h. The XylUS570 exhibited a high activity on xylan, but no activity was detected for cellulosic substrates. The Vmax and Km values exhibited by the purified enzyme on beechwood xylan were 37.05 U mL-1 and 4.189 mg mL-1, respectively. The XylUS570 was used in banana and orange peels hydrolysis and showed potential efficiency to liberate reducing sugars. It could be a good candidate for bio-ethanol production from fruit waste. The purified enzyme was used also as an additive in breadmaking. A decrease in water absorption, an increase in dough rising and improvements in volume and specific volume of the bread were recorded.
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  • 文章类型: Journal Article
    最近,磷脂酰甘油(PG)在叶绿体光合作用中的重要作用,精子的线粒体功能,对SARS-CoV-2感染幼稚细胞的能力的抑制作用,并减少2019年冠状病毒病引起的肺部炎症。开发一种酶促PG测定方法作为PG的高通量分析,在扁桃体的培养上清液中发现了PG特异性磷脂酶C(PG-PLC)。NT115。PG-PLC(SDS-PAGE为54kDa)在pH6.0和55°C下达到最大活性,并受到洗涤剂的抑制,如Briji35、吐温80和胆酸钠,但不是EDTA和金属离子,除了Zn2+。PG-PLC基因的开放阅读框由1620bp组成,编码515个氨基酸残基,其中包含前面的25个氨基酸残基(Tat信号肽序列)。PG-PLC的推定氨基酸序列与金属磷酸酯酶的氨基酸序列高度相似;然而,其底物特异性与已知PLC完全不同.
    Recently, phosphatidylglycerol (PG) focused on its important role in chloroplast photosynthesis, mitochondrial function of the sperm, an inhibitory effect on SARS-CoV-2 ability to infect naïve cells, and reducing lung inflammation caused by coronavirus disease 2019. To develop an enzymatic PG determination method as the high-throughput analysis of PG, a PG-specific phospholipase C (PG-PLC) was found in the culture supernatant of Amycolatopsis sp. NT115. PG-PLC (54 kDa by SDS-PAGE) achieved the maximal activity at pH 6.0 and 55 °C and was inhibited by detergents, such as Briji35, Tween 80, and sodium cholate, but not by EDTA and metal ions, except for Zn2+. The open reading frame of the PG-PLC gene consisted of 1620 bp encoding 515-amino-acid residues containing the preceding 25-amino-acid residues (Tat signal peptide sequence). The putative amino acid sequence of PG-PLC was highly similar to those of metallophosphoesterases; however, its substrate specificity was completely different from those of known PLCs.
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  • 文章类型: Journal Article
    背景:超氧化物歧化酶是一种重要的抗氧化应激酶,存在于蜜蜂毒液中,具有广泛的医药应用。
    结果:我们报道了来自埃及蜜蜂Apismelliferalamarckii的毒液SOD的纯化和表征,并称为BVSOD。从埃及蜜蜂毒液中纯化至同质。纯化程序包括粗提取,DEAE-纤维素阴离子交换柱层析,和SephacrylS-300凝胶过滤柱层析。如通过天然PAGE所研究,发现纯化的BVSOD是均质的。它表现出同源二聚体结构,天然形式的分子量为32kDa,亚基为16.0kDa。它在pH7.4时显示出最大活性。CuCl2,ZnCl2和MgCl2和提高BVSOD的活性,CoCl2、FeCl2和NiCl2抑制BVSOD活性。氰化钾和过氧化氢是BVSOD活性的最有效抑制剂,表明它是Cu/Zn-SOD类型。
    结论:纯化的BVSOD具有抗菌和抗肿瘤活性,可用于各种医疗和临床应用。
    BACKGROUND: Superoxide dismutase is an important antioxidative stress enzyme which is found in honeybee venom and has a wide pharmaceutical and medical applications.
    RESULTS: We reported the purification and characterization of venom SOD from Egyptian honeybee Apis mellifera lamarckii and termed BVSOD. It was purified to homogeneity from the Egyptian honeybee venom. The purification procedures included crude extraction, DEAE-cellulose anion exchange column chromatography, and Sephacryl S-300 gel filtration column chromatography. The purified BVSOD is found to be homogeneous as investigated by native PAGE. It exhibited homodimeric structure with a molecular weight of native form of 32 kDa and subunits of 16.0 kDa. It displayed the maximum activity at pH 7.4. CuCl2, ZnCl2, and MgCl2 and elevated the activity of BVSOD, while CoCl2, FeCl2, and NiCl2 inhibited BVSOD activity. Potassium cyanide and hydrogen peroxide were most potent inhibitors for BVSOD activity suggesting that it is a Cu/Zn-SOD type.
    CONCLUSIONS: The purified BVSOD is found to have antimicrobial and antitumor activities which can be used for various medical and clinical applications.
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  • 文章类型: Journal Article
    本研究报道了纯化的野生型内切1,4-β-甘露聚糖酶的理化性质,Alcaligenessp.和它最有前途的化学突变体.通过硫酸铵沉淀纯化野生和突变菌发酵的粗酶,离子交换和凝胶过滤色谱法,然后研究纯化的野生和突变酶的理化性质。来自野生和突变产碱菌的β-甘露聚糖酶。显示1.75和1.6倍的纯化率,回收率分别为2.6和2.5%,分子量分别为61.6和80kDa。野生型和突变型β-甘露聚糖酶在40和50°C时最具活性,两者的最适pH为6.0,并且具有很高的热稳定性,具有很高的百分比活性,但野生型β-甘露聚糖酶在广泛的pH活性下显示出更好的稳定性。在Mn2存在下刺激亲本菌株的β-甘露聚糖酶活性,Co2+,Zn2+,Mg2+和Na+。野生型及其突变体的Vmax和Km分别为0.747U/mL/min和5.2×10-4mg/mL,0.247U/mL/min和2.47×10-4mg/mL,分别。最改良突变体的核苷酸序列发生的变化可能归因于其热稳定性,耐热性和高底物亲和力-改善生物过程所需的特性。
    This study reported physicochemical properties of purified endo-1,4-β-mannanase from the wild type, Alcaligenes sp. and its most promising chemical mutant. The crude enzymes from fermentation of wild and mutant bacteria were purified by ammonium sulfate precipitation, ion exchange and gel-filtration chromatography followed by an investigation of the physicochemical properties of purified wild and mutant enzymes. β-mannanase from wild and mutant Alcaligenes sp. exhibited 1.75 and 1.6 purification-folds with percentage recoveries of 2.6 and 2.5% and molecular weights of 61.6 and 80 kDa respectively. The wild and mutant β-mannanase were most active at 40 and 50 °C with optimum pH 6.0 for both and were thermostable with very high percentage activity but the wild-type β-mannanase showed better stability over a broad pH activity. The β-mannanase activity from the parent strain was stimulated in the presence of Mn2+, Co2+, Zn2+, Mg2+ and Na+. Vmax and Km for the wild type and its mutant were found to be 0.747 U//mL/min and 5.2 × 10-4 mg/mL, and 0.247 U/mL/min and 2.47 × 10-4 mg/mL, respectively. Changes that occurred in the nucleotide sequences of the most improved mutant may be attributed to its thermo-stability, thermo-tolerant and high substrate affinity- desired properties for improved bioprocesses.
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  • 文章类型: Journal Article
    背景:凝血酶是止血过程中最重要的酶,在组织损伤的情况下允许快速和局部的凝血。骆驼凝血酶是先前纯化的骆驼蜱唾液腺凝血酶抑制剂的天然和适当的靶酶。
    结果:在这项研究中,骆驼凝血酶在肝素-琼脂糖亲和柱上的单个亲和层析步骤中被均匀纯化,比活性为3242NIH单位/mg蛋白.在SDS-PAGE上,纯化的骆驼凝血酶含有两种形式,37kDaα-凝血酶和28kDaβ-凝血酶,骆驼凝血酶原显示为72kDa。骆驼凝血酶Km值为60µM的N-(对甲苯磺酰基)-Gly-Pro-Arg-对硝基苯胺乙酸酯,在pH8.3时显示出最佳活性。PMSF是骆驼凝血酶最有效的抑制剂。骆驼蜱唾液腺凝血酶抑制剂在骆驼凝血酶上有两个结合位点,并以0.45µM的Ki值竞争性抑制。
    结论:发现纯化的骆驼凝血酶比牛凝血酶对骆驼蜱唾液腺凝血酶抑制剂更敏感。
    BACKGROUND: Thrombin is the most important enzyme in the hemostatic process by permitting rapid and localized coagulation in case of tissue damage. Camel thrombin is the natural and proper target enzyme for the previously purified camel tick salivary gland thrombin inhibitor.
    RESULTS: In this study, the camel thrombin was purified homogenously in a single affinity chromatographic step on the heparin-agarose affinity column with a specific activity of 3242 NIH units/mg proteins. On SDS-PAGE, the purified camel thrombin contained two forms, 37 kDa α-thrombin and 28 kDa β-thrombin, and the camel prothrombin was visualized as 72 kDa. The camel thrombin Km value was found out as 60 µM of N-(p-Tosyl)-Gly-Pro-Arg-p-nitroanilide acetate and displayed its optimum activity at pH 8.3. The PMSF was the most potent inhibitor of camel thrombin. Camel tick salivary gland thrombin inhibitor has two binding sites on camel thrombin and inhibited it competitively with Ki value of 0.45 µM.
    CONCLUSIONS: The purified camel thrombin was found to be more susceptible toward the camel tick salivary gland thrombin inhibitor than bovine thrombin.
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  • 文章类型: Journal Article
    在本研究中,Ulva增生,一种可食用的藻类,用于制备血管紧张素转换酶(ACE)抑制肽。藻类蛋白被分离,然后被五种商业酶水解(alcalase,木瓜蛋白酶,胃蛋白酶,胰蛋白酶,中性蛋白酶),无论是单独或组合。水解产物,具有最高的体外ACE抑制活性,使用Sephadex-G100超滤处理,HPLC-Q-TOF-MS,ADMET筛选和分子对接,分别。然后鉴定IC50值为10.32±0.96μM的ACE抑制肽DIGGL。该肽通过非竞争方式对抗ACE,主要归因于三个常规氢键。它可以激活NO生成过程中内皮型一氧化氮合酶的活性,并减少血管紧张素II诱导的人脐静脉内皮细胞内皮素-1的分泌。同时,DIGGL可以促进小鼠脾细胞增殖,与ConA或LPS共孵育时也有效,分别。此外,抗ACE肽在体外消化胃肠蛋白酶(胃蛋白酶-胰蛋白酶)过程中可以保持活性。
    In the present study, Ulva prolifera, an edible alga, was used to prepare angiotensin-I converting enzyme (ACE) inhibitory peptide. The algae protein was isolated and later hydrolyzed by five commercial enzymes (alcalase, papain, pepsin, trypsin, neutral protease), either individually or in combination. Hydrolysate, with the highest in vitro ACE inhibitory activity, was processed using the Sephadex-G100, ultrafiltration, HPLC-Q-TOF-MS, ADMET screening and molecular docking, respectively. The ACE inhibitory peptide DIGGL with a IC50 value of 10.32 ± 0.96 μM was then identified. The peptide against ACE by a non-competitive mode and mainly attributable to the three Conventional Hydrogen Bonds. It could activate Endothelial nitric oxide synthase activity in NO generation and reduce Endothelin-1 secretion induced by Angiotensin II in Human umbilical vein endothelial cells. Meanwhile, DIGGL could promote mice splenocytes proliferation, which was also effective when co-incubated with Con A or LPS, respectively. Besides, the anti-ACE peptide could remain active during the digestion of gastrointestinal proteases (pepsin-trypsin) in vitro.
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  • 文章类型: Journal Article
    在我们对一种新的抗病毒药物的调查中,使用离子交换和亲和柱色谱法从Nostocmuscorum中纯化了两种类型的凝集素。Nostocmuscorum凝集素(NML)根据其碳水化合物偏好进行分类。Nostocmuscorum凝集素-1(NML-1)对没有连接碳水化合物的复杂糖蛋白表现出严格的结合特异性,和另一个显示对α-糖苷甘露糖聚合物(NML-2)的特异性,并被分类为具有16.8%连接碳水化合物的糖蛋白。NML-1在天然PAGE上显示166kDa的单条带,在SDS-PAGE上显示81kDa和85kDa的两条带,这证实了这种凝集素的异源二聚体性质。而NML-2是由25kDa亚基组成的50kDa糖蛋白。NML-1的物理表征显示其在90°C的较高温度下5分钟和宽pH范围(4-9)的稳定性,而MNL-2在80°C的温度下25分钟和5-8的pH范围内显示出稳定性。NML-1不需要金属离子进行凝集活性,而NML-2的活性被锰离子加倍。使用斑块测定法评估了两种凝集素对1型单纯疱疹(HSV-1)的抗病毒活性,该试验显示NML-1在早期抑制HSV-1感染,而NML-2在感染后期发挥抗病毒作用。这些结果表明,念珠菌是抗病毒药物发现的独特线索,因为它是具有不同作用方式的抗病毒凝集素的新来源。
    In our survey for a new antiviral agent, two types of lectin were purified from Nostoc muscorum using both ion-exchange and affinity columns chromatography. Nostoc muscorum lectins (NMLs) are categorized based on their carbohydrate preference. Nostoc muscorum lectin-1(NML-1) exhibited a strict binding specificity for complex glycoproteins without linked carbohydrates, and the other displayed specificity for α- glycosides mannose polymers (NML-2) and was classified as a glycoprotein with 16.8% linked carbohydrates. NML-1 displayed a single band of 166 kDa on native-PAGE and two bands of 81 kDa and 85 kDa on SDS-PAGE, which confirmed the heterodimeric nature of this lectin. While NML-2 is a 50 kDa glycoprotein composed of 25 kDa subunits. Physical characterization of NML-1 displayed its stability at a higher temperature of 90 °C for 5 min and over a wide pH range (4-9), while MNL-2 displayed stability up to a temperature of 80 °C for 25 min and a pH range of 5-8. NML-1 didn\'t require metal ions for agglutination activity, while the activity of NML-2 was doubled by manganese ions. The antiviral activity of two lectins was assessed against herpes simplex type-1 (HSV-1) using a plaque assay which revealed that NML-1 inhibited HSV-1 infection at an early stage in contrast to NML-2 which exerted its antiviral effect at the late stage of infection. These results suggest that Nostoc muscorum is a unique lead for antiviral drug discovery as it is a novel source for antiviral lectins with different modes of action.
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  • 文章类型: Journal Article
    木聚糖酶(EC3.2.1.8)被认为是广泛的行业,包括纸浆和造纸的可持续发展的潜在绿色解决方案。食品和饮料,动物饲料,制药,和生物燃料,因为它们是降解木聚糖的木聚糖键的关键酶,全球第二丰富的原材料的主要组成部分。因此,有一个关键的需要工业化的木聚糖酶必须具有高的比活性,对有机溶剂或洗涤剂具有耐受性,并在各种条件下具有活性,如高温和pH。在这项研究中,从黑曲霉VTCC017的培养液中纯化胞外木聚糖酶,用于一级结构测定和性质表征。纯化的连续步骤包括离心,SephadexG-100过滤,和DEAE-Sephadex色谱法。纯化的木聚糖酶(比活性达到6596.79UI/mg蛋白质)是分子量为37kDa的单体,根据SDS电泳估算。LC/MS的结果表明纯化的蛋白质确实是内切-1,4-β-D-木聚糖酶。纯化的木聚糖酶显示最佳温度为55°C,和pH6.5,在45-50°C的温度范围内具有稳定的木聚糖分解活性,并且在5.0-8.0的pH范围内。大多数二价金属阳离子,包括Zn2+,Fe2+,Mg2+,Cu2+,Mn2显示对木聚糖酶活性的一些抑制作用,而单价金属阳离子如K和Ag对酶活性表现出轻微的刺激作用。引入10-30%不同的有机溶剂(正丁醇,丙酮,异丙醇)和几种去污剂(TritonX-100,Tween20和SDS)略微降低了酶活性。此外,纯化的木聚糖酶似乎对甲醇和乙醇具有耐受性,甚至受到吐温80的刺激。总的来说,有了这些独特的特性,推定的木聚糖酶可能是许多工业用途的成功候选者。
    Xylanases (EC 3.2.1.8) have been considered as a potential green solution for the sustainable development of a wide range of industries including pulp and paper, food and beverages, animal feed, pharmaceuticals, and biofuels because they are the key enzymes that degrade the xylosidic linkages of xylan, the major component of the second most abundant raw material worldwide. Therefore, there is a critical need for the industrialized xylanases which must have high specific activity, be tolerant to organic solvent or detergent and be active during a wide range of conditions, such as high temperature and pH. In this study, an extracellular xylanase was purified from the culture broth of Aspergillus niger VTCC 017 for primary structure determination and properties characterization. The successive steps of purification comprised centrifugation, Sephadex G-100 filtration, and DEAE-Sephadex chromatography. The purified xylanase (specific activity reached 6596.79 UI/mg protein) was a monomer with a molecular weight of 37 kDa estimating from SDS electrophoresis. The results of LC/MS suggested that the purified protein is indeed an endo-1,4-β-D-xylanase. The purified xylanase showed the optimal temperature of 55 °C, and pH 6.5 with a stable xylanolytic activity within the temperature range of 45-50 °C, and within the pH range of 5.0-8.0. Most divalent metal cations including Zn2+, Fe2+, Mg2+, Cu2+, Mn2+ showed some inhibition of xylanase activity while the monovalent metal cations such as K+ and Ag+ exhibited slight stimulating effects on the enzyme activity. The introduction of 10-30% different organic solvents (n-butanol, acetone, isopropanol) and several detergents (Triton X-100, Tween 20, and SDS) slightly reduced the enzyme activity. Moreover, the purified xylanase seemed to be tolerant to methanol and ethanol and was even stimulated by Tween 80. Overall, with these distinctive properties, the putative xylanase could be a successful candidate for numerous industrial uses.
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  • 文章类型: Journal Article
    BACKGROUND: Honey bee venom contains various enzymes with wide medical and pharmaceutical applications.
    RESULTS: The phospholipase A2 (PLA2) has been apparently purified from the venom of Egyptian honey bee (Apis mellifera lamarckii) 8.9-fold to a very high specific activity of 6033 U/mg protein using DEAE-cellulose and Sephacryl S-300 columns. The purified bee venom PLA2 is monomeric 16 kDa protein and has isoelectric point (pI) of 5.9. The optimal activity of bee venom PLA2 was attained at pH 8 and 45 °C. Cu2+, Ni2+, Fe2+, Ca2+, and Co2+ exhibited a complete activating effect on it, while Zn2+, Mn2+, NaN3, PMSF, N-Methylmaleimide, and EDTA have inhibitory effect.
    CONCLUSIONS: The purified bee venom PLA2 exhibited anti-platelet aggregation and anti-coagulation activities which makes it promising agent for developing novel anti-clot formation drugs in future.
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  • 文章类型: Journal Article
    L-Glutaminase is an amidohydrolase which can act as a vital chemotherapeutic agent against various malignancies. In the present work, L-glutaminase productivity from Aspergillus versicolor Faesay4 was significantly increased by 7.72-fold (from 12.33 ± 0.47 to 95.15 ± 0.89 U/mL) by optimizing submerged fermentation parameters in Czapek\'s Dox (CZD) medium including an incubation period from 3 (12.33 ± 0.47 U/mL) to 6 days (23.36 ± 0.58 U/mL), an incubation temperature from 30 °C (23.36 ± 0.49 U/mL) to 25 °C (31.08 ± 0.60 U/mL), initial pH from pH 5.0 (8.49 ± 0.21 U/mL)  to pH 7.0 (32.18 ± 0.57 U/mL), replacement of glucose (30.19 ± 0.52 U/mL) by sucrose (48.97 ± 0.67 U/mL) as the carbon source at a concentration of 2.0% (w/v), increasing glutamine concentration as the nitrogen source from 1.0% (w/v, 48.54 ± 0.48 U/mL) to 1.5% (w/v, 63.01 ± 0.60 U/mL), and addition of a mixture of KH2PO4 and NaCl (0.5% w/v for both) to SZD as the metal supplementation (95.15 ± 0.89 U/mL). Faesay4 L-glutaminase was purified to yield total activity 13,160 ± 22.76 (U), specific activity 398.79 ± 9.81 (U/mg of protein), and purification fold 2.1 ± 3.18 with final enzyme recovery 57.22 ± 2.17%. The pure enzyme showed a molecular weight of 61.80 kDa, and it was stable and retained 100.0% of its activity at a temperature ranged from 10 to 40 °C and pH 7.0. In our trials, to increase the enzyme activity by optimizing the assay conditions (which were temperature 60 °C, pH 7.0, substrate glutamine, substrate concentration 1.0%, and reaction time 60 min), the enzyme activity increased by 358.8% after changing the assay temperature from 60 to 30 °C and then increased by 138% after decreasing the reaction time from 60 to 40 min. However, both pH 7.0 and glutamine as the substrate remain the best assay parameters for the L-glutaminase activity. When the glutamine in the assay as the reaction substrate was replaced by asparagine, lysine, proline, methionine, cysteine, glycine, valine, phenylalanine, L-alanine, aspartic acid, tyrosine, and serine, the enzyme lost 23.86%, 29.0%, 31.0%, 48.3%, 50.0%, 73.6%, 74.51%, 80.42%, 82.5%, 83.43%, 88.36%, and 89.78% of its activity with glutamine, respectively. Furthermore, Mn2+, K+, Na+, and Fe3+ were enzymatic activators that increased the L-glutaminase activity by 25.0%, 18.05%, 10.97%, and 8.0%, respectively. Faesay4 L-glutaminase was characterized as a serine protease enzyme as a result of complete inhibition by all serine protease inhibitors (PMSF, benzamidine, and TLCK). Purified L-glutaminase isolated from Aspergillus versicolor Faesay4 showed potent DPPH scavenging activities with IC50 = 50 μg/mL and anticancer activities against human liver (HepG-2), colon (HCT-116), breast (MCF-7), lung (A-549), and cervical (Hela) cancer cell lines with IC50 39.61, 12.8, 6.18, 11.48, and 7.25 μg/mL, respectively.
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