phage display technology

噬菌体显示技术
  • 文章类型: Journal Article
    广谱抗菌药物往往缺乏特异性,导致不分青红皂白的杀菌活动,这可能会破坏宿主菌群的正常微生物平衡,并在全身给药过程中引起不必要的细胞毒性。在这项研究中,我们通过将噬菌体展示肽引入广谱抗菌肽上,构建了针对金黄色葡萄球菌的特异性靶向抗菌肽,并通过单因素修饰探索了其结构-功能关系.通过基于选择性指数和靶向指数的筛选获得的SFK2显示出对金黄色葡萄球菌的特异性杀伤能力。此外,SFK2在小鼠和仔猪中显示出优异的生物相容性,并证明了对金黄色葡萄球菌感染的显着治疗效果。总之,我们筛选的噬菌体衍生七肽有效地增强了抗菌肽对金黄色葡萄球菌的特异性杀菌能力,为开发靶向抗菌肽提供理论依据。
    Broad-spectrum antibacterial drugs often lack specificity, leading to indiscriminate bactericidal activity, which can disrupt the normal microbial balance of the host flora and cause unnecessary cytotoxicity during systemic administration. In this study, we constructed a specifically targeted antimicrobial peptide against Staphylococcus aureus by introducing a phage-displayed peptide onto a broad-spectrum antimicrobial peptide and explored its structure-function relationship through one-factor modification. SFK2 obtained by screening based on the selectivity index and the targeting index showed specific killing ability against S. aureus. Moreover, SFK2 showed excellent biocompatibility in mice and piglet, and demonstrated significant therapeutic efficacy against S. aureus infection. In conclusion, our screening of phage-derived heptapeptides effectively enhances the specific bactericidal ability of the antimicrobial peptides against S. aureus, providing a theoretical basis for developing targeted antimicrobial peptides.
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  • 文章类型: Journal Article
    抗体是在生物医学研究的各种领域中使用的特异性试剂。单克隆抗体主要使用两种常见技术产生,即杂交瘤和抗体工程,受到一些限制,如无聊的筛选程序,生产时间长,低效率和自动化程度。为了解决这些限制,已经开发了各种微流体技术用于抗体分离和筛选。
    这项研究特别调查了最近发表在同行评审期刊上的报告,这些期刊在包括WebofScience在内的各种数据库中索引。Scopus,PubMed,谷歌学者,科学直接。
    在这项研究中,我们从130篇文章中确定了总共70篇论文。这些论文集中在三个主要组的微流控平台的应用,即阀门,微孔,和液滴,在抗体的开发中使用杂交瘤方法和噬菌体展示技术。我们提供了这些应用的摘要,并讨论了该领域的关键发现。此外,我们用几个例子来说明我们的讨论,以增进理解。
    微流体有可能成为简化抗体发现中涉及的复杂实验室程序的有价值的工具。然而,重要的是要注意,微流体仅限于实验室设置。需要进一步增强,以应对现有挑战,并使微流控成为可靠的,准确,和具有成本效益的抗体发现工具。
    UNASSIGNED: Antibody is specific reagent that be utilized in various field of biomedical research. Monoclonal antibodies are mostly produced using two common techniques namely hybridoma and antibody engineering, which suffer from some limitations such as boring screening procedures, long production time, low efficacy and a degree of automation. To address these limitations, various microfluidics techniques have been developed for the antibody isolation and screening.
    UNASSIGNED: This study specifically investigates nearly recent reports published in peer-reviewed journals indexed in various databases including Web of Science, Scopus, PubMed, Google Scholar, and Science Direct.
    UNASSIGNED: In this study, we identified a total of seventy papers from a pool of 130 articles. These papers focus on the application of three major groups of microfluidic platforms, namely valves, microwells, and droplets, in the development of antibodies using hybridoma method and phage display technology. We provide a summary of these applications and also discuss the key findings in this field. Additionally, we illustrate our discussion with several examples to enhance understanding.
    UNASSIGNED: Microfluidics has the potential to serve as a valuable tool in streamlining complex laboratory procedures involved in antibody discovery. However, it is important to note that microfluidics is limited to laboratory settings. Further enhancements are needed to address existing challenges and to make microfluidics a reliable, accurate, and cost-effective tool for antibody discovery.
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  • 文章类型: Journal Article
    之前已经显示了一组三个修改-称为S1,CrystalKappa,和肘部协同作用以提高抗原结合片段(Fab)框架的可结晶性。这里,我们制备了一个噬菌体展示文库,并进行了结晶筛选,以鉴定位于重链肘部区域附近的其他取代,这些取代与S1,CrystalKappa,和肘部修饰以进一步提高Fab框架的表达和结晶性。一个取代(K141Q)支持特征晶体κ介导的Fab:Fab晶格堆积相互作用。另一种取代(E172G)通过减轻由缩短和体积较大的肘部接头区引起的一些应变来改善肘部修饰与Fab框架的相容性。第三次取代(F170W)产生分裂Fab构象,导致强大的晶格堆积相互作用,包括可变重链和轻链结构域之间的生物相互作用界面。总之,我们用了K141Q,E172G,和F170W取代-补充S1,水晶κ,和肘部修饰-以产生一组高度可结晶的Fab框架,其可用作伴侣以使得能够通过X射线晶体学容易地阐明Fab:抗原复合物结构。
    It has been shown previously that a set of three modifications-termed S1, Crystal Kappa, and elbow-act synergistically to improve the crystallizability of an antigen-binding fragment (Fab) framework. Here, we prepared a phage-displayed library and performed crystallization screenings to identify additional substitutions-located near the heavy-chain elbow region-which cooperate with the S1, Crystal Kappa, and elbow modifications to increase expression and improve crystallizability of the Fab framework even further. One substitution (K141Q) supports the signature Crystal Kappa-mediated Fab:Fab crystal lattice packing interaction. Another substitution (E172G) improves the compatibility of the elbow modification with the Fab framework by alleviating some of the strain incurred by the shortened and bulkier elbow linker region. A third substitution (F170W) generates a split-Fab conformation, resulting in a powerful crystal lattice packing interaction comprising the biological interaction interface between the variable heavy and light chain domains. In sum, we have used K141Q, E172G, and F170W substitutions-which complement the S1, Crystal Kappa, and elbow modifications-to generate a set of highly crystallizable Fab frameworks that can be used as chaperones to enable facile elucidation of Fab:antigen complex structures by x-ray crystallography.
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  • 文章类型: Journal Article
    卵巢癌,在全球女性中排名第七的恶性肿瘤,在诊断和治疗干预方面面临重大挑战。早期检测的困难被当前筛查方法固有的局限性和无效性放大了。强调迫切需要更有效的诊断和治疗策略。噬菌体展示技术在这种背景下成为一项关键创新,利用广泛的噬菌体肽文库来鉴定对癌细胞标记具有特异性的配体,从而实现精确靶向的治疗策略。这项技术承诺了卵巢癌管理的范式转变,专注于靶向药物递送系统,以提高治疗准确性和疗效,同时最大限度地减少不良反应。通过细致的审查,本文评估了噬菌体展示在增强卵巢癌治疗中的革命性潜力,代表在对抗这种具有挑战性的疾病方面取得了重大进展。噬菌体显示技术被认为是开发有效的卵巢癌免疫诊断和治疗方法的重要工具。促进早期检测,精准靶向药物,并实施定制治疗计划。
    Ovarian cancer, ranking as the seventh most prevalent malignancy among women globally, faces significant challenges in diagnosis and therapeutic intervention. The difficulties in early detection are amplified by the limitations and inefficacies inherent in current screening methodologies, highlighting a pressing need for more efficacious diagnostic and treatment strategies. Phage display technology emerges as a pivotal innovation in this context, utilizing extensive phage-peptide libraries to identify ligands with specificity for cancer cell markers, thus enabling precision-targeted therapeutic strategies. This technology promises a paradigm shift in ovarian cancer management, concentrating on targeted drug delivery systems to improve treatment accuracy and efficacy while minimizing adverse effects. Through a meticulous review, this paper evaluates the revolutionary potential of phage display in enhancing ovarian cancer therapy, representing a significant advancement in combating this challenging disease. Phage display technology is heralded as an essential instrument for developing effective immunodiagnostic and therapeutic approaches in ovarian cancer, facilitating early detection, precision-targeted medication, and the implementation of customized treatment plans.
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  • 文章类型: Journal Article
    大豆球蛋白是一种重要的致敏蛋白。A1a是大豆球蛋白(G1A1a)中G1亚基的酸性链,它有很强的致敏性。在这项研究中,我们使用噬菌体展示技术表达G1A1a及其重叠片段的蛋白,并通过间接酶联免疫吸附试验(iELISA)确定表达蛋白的抗原性和致敏性。经过三轮筛选,确定片段A1a-2-B-I(151SLENQLDQMPRRFYLAGNQEQEFLKYQQEQG181)是通过热加工破坏的G1A1a的变应原结构域。此外,从片段A1a-2-B-I合成了三个重叠的肽,并且通过包括斑点印迹和iELISA的方法在该结构域中发现了线性表位。肽2(157DQMPRRFYLANGNQE170)表现出致敏性,用丙氨酸代替它后,发现氨基酸D157、Q158、M159和Y164是影响其抗原性的关键氨基酸,而Q158、M159、R162和N168影响致敏性。
    Glycinin is an important allergenic protein. A1a is the acidic chain of the G1 subunit in glycinin (G1A1a), and it has strong allergenicity. In this study, we used phage display technology to express the protein of G1A1a and its overlapping fragments and an indirect enzyme-linked immunosorbent assay (iELISA) to determine the antigenicity and allergenicity of the expressed protein. After three rounds of screening, it was determined that fragment A1a-2-B-I (151SLENQLDQMPRRFYLAGNQEQEFLKYQQEQG181) is the allergenic domain of G1A1a destroyed by thermal processing. In addition, three overlapping peptides were synthesized from fragments A1a-2-B-I, and a linear epitope was found in this domain through methods including dot blot and iELISA. Peptide 2 (157DQMPRRFYLANGNQE170) showed allergenicity, and after replacing it with alanine, it was found that amino acids D157, Q158, M159, and Y164 were the key amino acids that affected its antigenicity, while Q158, M159, R162, and N168 affected allergenicity.
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  • 文章类型: Journal Article
    可定制和数量可调的酶递送纳米载体将在肿瘤治疗中有用。在这里,噬菌体载体,T4-Lox-DNA-Fe(TLDF),提出了使用噬菌体展示技术巧妙地调节酶数量以重塑肿瘤微环境(TME)的方法。关于肿瘤对乳酸的需求,每个噬菌体都被设计成展示720乳酸氧化酶(Lox),有助于乳酸消耗重建肿瘤的能量代谢。噬菌体载体掺入了具有Fenton反应能力的葡聚糖铁(Fe)。通过Lox催化反应生成H2O2,扩大葡聚糖铁基化学动力学疗法(CDT)的H2O2供应。从促红细胞生成素(EPO)生物合成过程中汲取灵感,构建EPO增强子以赋予EPO-Keap1质粒(DNA)具有肿瘤缺氧激活功能,破坏TME的氧化还原稳态。Lox消耗当地氧气,Lox和质粒之间的正反馈促进了海带ECH相关蛋白1(Keap1)的表达。因此,抗氧化剂转录因子Nrf2的下调,与CDT协同作用,放大氧化杀伤作用,导致肿瘤抑制高达78%。这项研究将适应性强的T4噬菌体载体与生物智能质粒无缝集成,提出了一种有希望的肿瘤治疗方法。
    Customizable and number-tunable enzyme delivery nanocarriers will be useful in tumor therapy. Herein, a phage vehicle, T4-Lox-DNA-Fe (TLDF), which adeptly modulates enzyme numbers using phage display technology to remodel the tumor microenvironment (TME) is presented. Regarding the demand for lactic acid in tumors, each phage is engineered to display 720 lactate oxidase (Lox), contributing to the depletion of lactic acid to restructure the tumor\'s energy metabolism. The phage vehicle incorporated dextran iron (Fe) with Fenton reaction capabilities. H2O2 is generated through the Lox catalytic reaction, amplifying the H2O2 supply for dextran iron-based chemodynamic therapy (CDT). Drawing inspiration from the erythropoietin (EPO) biosynthetic process, an EPO enhancer is constructed to impart the EPO-Keap1 plasmid (DNA) with tumor hypoxia-activated functionality, disrupting the redox homeostasis of the TME. Lox consumes local oxygen, and positive feedback between the Lox and the plasmid promotes the expression of kelch ECH Associated Protein 1 (Keap1). Consequently, the downregulation of the antioxidant transcription factor Nrf2, in synergy with CDT, amplifies the oxidative killing effect, leading to tumor suppression of up to 78%. This study seamlessly integrates adaptable T4 phage vehicles with bio-intelligent plasmids, presenting a promising approach for tumor therapy.
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  • 文章类型: Journal Article
    噬菌体,原核病毒,在基因工程方面拥有巨大潜力,为疫苗开发开辟新的途径。我们的研究旨在建立表达MAGE-A1肿瘤肽的工程化M13噬菌体作为黑色素瘤治疗的疫苗。通过体内实验,我们试图评估它们诱导稳健免疫反应的能力.使用噬菌体展示技术,我们改造了两种表达MAGE-A1肽的M13噬菌体,使其与pVIII或pIIII外壳蛋白融合。小鼠腹膜内接种疫苗三次,相隔两周,使用两种不同的工程噬菌体;对照组接受野生型噬菌体。每次接种疫苗后7天采集的血清样本通过ELISA测定法进行分析,而第二次加强后7天收获的脾细胞通过离体细胞毒性测定进行评估。通过蛋白质印迹和纳米LC-MS/MS确认融合蛋白。噬菌体的应用是安全的,对小鼠无不良影响。工程噬菌体有效触发免疫反应,导致抗MAGE-A1抗体水平与施用的噬菌体剂量成比例增加。抗MAGE-A1抗体在体外也表现出与B16F10肿瘤细胞的结合能力,与对照样品相反。脾细胞表现出增强的CTL对B16F10细胞的细胞毒性。我们已经证明了工程化M13噬菌体的免疫原性能力,强调他们的黑色素瘤免疫疗法的潜力。
    Bacteriophages, prokaryotic viruses, hold great potential in genetic engineering to open up new avenues for vaccine development. Our study aimed to establish engineered M13 bacteriophages expressing MAGE-A1 tumor peptides as a vaccine for melanoma treatment. Through in vivo experiments, we sought to assess their ability to induce robust immune responses. Using phage display technology, we engineered two M13 bacteriophages expressing MAGE-A1 peptides as fusion proteins with either pVIII or pIIII coat proteins. Mice were intraperitoneally vaccinated three times, two weeks apart, using two different engineered bacteriophages; control groups received a wild-type bacteriophage. Serum samples taken seven days after each vaccination were analyzed by ELISA assay, while splenocytes harvested seven days following the second boost were evaluated by ex vivo cytotoxicity assay. Fusion proteins were confirmed by Western blot and nano-LC-MS/MS. The application of bacteriophages was safe, with no adverse effects on mice. Engineered bacteriophages effectively triggered immune responses, leading to increased levels of anti-MAGE-A1 antibodies in proportion to the administered bacteriophage dosage. Anti-MAGE-A1 antibodies also exhibited a binding capability to B16F10 tumor cells in vitro, as opposed to control samples. Splenocytes demonstrated enhanced CTL cytotoxicity against B16F10 cells. We have demonstrated the immunogenic capabilities of engineered M13 bacteriophages, emphasizing their potential for melanoma immunotherapy.
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  • 文章类型: Journal Article
    常见的食物过敏甲壳动物原肌球蛋白(TM)构成了重大的食品安全挑战,这需要快速和灵敏的方法来筛选食品中的TM。在这里,对甲壳动物TM特异的可变新抗原受体(VNAR)单结构域抗体从初始噬菌体展示的鲨鱼VNAR文库中分离。随后,开发了一种基于金纳米颗粒标记的噬菌体展示鲨鱼VNAR(AuNPs@PSV)探针的侧流免疫层析测定法(LFIA),用于检测食品中的TM。AuNP@PSV-LFIA进行一次测试需要15分钟,并且视觉检测限(vLOD)为0.1μg/mL,仪器LOD为0.02μg/mL。良好的选择性,准确度,精度,并证实了AuNPs@PSV-LFIA的稳定性。此外,21种市售食品的检测结果由过敏原标签组成,并通过市售ELISA试剂盒进行验证.因此,这项工作证明了VNAR通过LFIA检测食品中TM的巨大潜力。
    The common food allergy crustacean tropomyosin (TM) poses a significant food safety challenge, which requires rapid and sensitive methods for screening TM in food. Herein, the variable new antigen receptor (VNAR) single-domain antibodies specific for the crustacean TM were isolated from a naïve phage-displayed shark VNAR library. Subsequently, a lateral flow immunochromatographic assay (LFIA) based on the gold nanoparticle-labeled phage-displayed shark VNAR (AuNPs@PSV) probe was developed for the detection of TM in food. The AuNPs@PSV-LFIA took 15 min for one test and had a visual limit of detection (vLOD) of 0.1 μg/mL and an instrumental LOD of 0.02 μg/mL. Good selectivity, accuracy, precision, and stability were confirmed for the AuNPs@PSV-LFIA. Moreover, the test results of 21 commercially available food products consisted of the allergen labels and were validated by a commercial ELISA kit. Therefore, this work demonstrated the great potential of VNAR for detecting TM in food by LFIA.
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  • 文章类型: Journal Article
    犬瘟热病毒(CDV)是一种高度传染性的病原体,会导致严重的腹泻,家犬的发烧和呕吐,对养犬业构成严重威胁。目前,尽管已经有针对CDV感染的疫苗,但目前尚无用于紧急治疗的有效治疗剂.单链可变片段(scFv)抗体已被证明可以有效抑制病毒感染,提示作为治疗犬瘟热的潜在候选药物。在这项研究中,用减毒活疫苗肌内免疫的犬外周血淋巴细胞构建噬菌体展示的scFv文库,并进行了四轮针对CDV的扫视。随后的间接酶联免疫吸附试验筛选显示了对CDV具有特异性的高亲和力scFv抗体,间接免疫荧光分析筛选显示scFv抗体的CDV中和活性。我们的结果表明,获得了与CDV具有高亲和力结合和对CDV中和活性的scFv抗体4-15(scFv4-15),这显示了有效的治疗潜力,在体内的狗用致死剂量的CDV攻击。最后,通过噬菌体展示技术获得的对CDV具有高亲和力结合和中和活性的scFv4-15为抗CDV感染的治疗剂提供了有希望的候选物。
    Canine distemper virus (CDV) is a highly contagious pathogen that causes severe diarrhea, fever and vomiting in domestic dogs, posing a serious threat to the dog breeding industry. Currently, there are no effective therapeutic agents for emergency treatment despite the availability of vaccines against CDV infection. Single-chain fragment variable (scFv) antibody has been demonstrated to effectively inhibit virus infections, suggesting a potential candidate as a therapeutic agent for canine distemper. In this study, a phage-displayed scFv library was constructed from the peripheral blood lymphocytes of dog immunized intramuscularly with live-attenuated CDV vaccine, and was subjected to four rounds of pannings against CDV. Subsequent indirect enzyme-linked immunosorbent assay screening revealed high-affinity scFv antibodies specific to CDV, and indirect immunofluorescence assay screening revealed CDV-neutralizing activity of scFv antibodies. Our results showed that a scFv antibody 4-15 (scFv 4-15) with high-affinity binding to CDV and neutralizing activity against CDV was obtained, which displayed effective therapeutic potential in vivo for dogs challenged with a lethal dose of CDV. Conclusively, the scFv 4-15 with high-affinity binding and neutralizing activity to CDV that was obtained by phage display technology provides a promising candidate for the therapeutic agents against CDV infection.
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  • 文章类型: Journal Article
    再循环抗体在血液中的中性pH值与靶抗原结合,并在pH值下降时内吞释放它们,允许抗体通过FcRn介导的途径再循环到循环中,而抗原经历溶酶体降解。这使得再循环抗体能够在较低剂量下实现与其不可再循环对应物相当的治疗效果。此类抗体的开发通常通过抗体可变区的组氨酸掺杂或通过利用组氨酸掺杂文库进行体外抗体选择活动来实现。两者都是可能引入序列负债的策略。这里,我们提出了一种采用幼稚抗体噬菌体展示库的方法,由自然可变域组成,以pH依赖性方式从眼镜蛇毒液中发现结合α-cobratoxin的抗体。因此,在生物层干涉测量实验中,发现一种抗体在pH5.5时的解离速率比7.4高7倍。有趣的是,在该抗体的可变结构域中没有发现组氨酸残基,此外,该抗体显示与组氨酸缺失抗原突变体的pH依赖性结合,因此,证明pH依赖性可能不总是由组氨酸残基驱动。通过分子动力学模拟,发现可滴定残基的不同质子化状态,这可能是观察到的抗体的pH依赖性抗原结合特性的原因。最后,考虑到幼稚抗体文库的典型高度多样性,本文介绍的方法可能用于发现针对不同靶标的再循环抗体,而无需进行组氨酸掺杂。本文受版权保护。保留所有权利。
    Recycling IgG antibodies bind to their target antigen at physiological pH in the blood stream and release them upon endocytosis when pH levels drop, allowing the IgG antibodies to be recycled into circulation via FcRn-mediated cellular pathways, while the antigens undergo lysosomal degradation. This enables recycling antibodies to achieve comparable therapeutic effect at lower doses than their non-recycling counterparts. The development of such antibodies is typically achieved by histidine doping of their variable regions or by performing in vitro antibody selection campaigns utilizing histidine doped libraries. Both are strategies that may introduce sequence liabilities. Here, we present a methodology that employs a naïve antibody phage display library, consisting of natural variable domains, to discover antibodies that bind α-cobratoxin from the venom of Naja kaouthia in a pH-dependent manner. As a result, an antibody was discovered that exhibits a 7-fold higher off-rate at pH 5.5 than pH 7.4 in bio-layer interferometry experiments. Interestingly, no histidine residues were found in its variable domains, and in addition, the antibody showed pH-dependent binding to a histidine-devoid antigen mutant. As such, the results demonstrate that pH-dependent antigen-antibody binding may not always be driven by histidine residues. By employing molecular dynamics simulations, different protonation states of titratable residues were found, which potentially could be responsible for the observed pH-dependent antigen binding properties of the antibody. Finally, given the typically high diversity of naïve antibody libraries, the methodology presented here can likely be applied to discover recycling antibodies against different targets ab initio without the need for histidine doping.
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