p53 signaling pathway

p53 信号通路
  • 文章类型: Journal Article
    纳米塑料(NPs)污染已成为全球性的环境问题,引发了许多健康问题。然而,NPs暴露的心脏毒性和潜在机制迄今尚未得到充分研究.为了解决这个问题,我们全面评估了聚苯乙烯纳米塑料(PS-NP)在健康和病理状态下的心脏毒性。简而言之,小鼠口服暴露于四种不同浓度(0毫克/天,0.1毫克/天,0.5毫克/天,和2.5mg/天)的100-nmPS-NP持续6周,以评估其在健康状态下的心脏毒性。考虑到具有潜在健康状况的个人更容易受到污染的不利影响,我们进一步研究了PS-NP对异丙肾上腺素诱导的病理状态的心脏毒性作用.结果显示PS-NPs诱导心肌细胞凋亡,心脏纤维化,健康小鼠的心肌功能障碍和病理状态下的心脏重塑加剧。RNA测序显示,PS-NP显着上调心脏中同源结构域相互作用蛋白激酶2(HIPK2),并激活P53和TGF-β信号通路。HIPK2的药理学抑制降低了P53磷酸化并抑制了TGF-β1/Smad3通路的激活,这反过来降低了PS-NP诱导的心脏毒性。这项研究阐明了PS-NP诱导心脏毒性的潜在机制,并强调了评估纳米塑料安全性的重要性。特别是对于预先存在心脏病的人。
    Nanoplastics (NPs) pollution has become a global environmental problem, raising numerous health concerns. However, the cardiotoxicity of NPs exposure and the underlying mechanisms have been understudied to date. To address this issue, we comprehensively evaluated the cardiotoxicity of polystyrene nanoplastics (PS-NPs) in both healthy and pathological states. Briefly, mice were orally exposed to four different concentrations (0 mg/day, 0.1 mg/day, 0.5 mg/day, and 2.5 mg/day) of 100-nm PS-NPs for 6 weeks to assess their cardiotoxicity in a healthy state. Considering that individuals with underlying health conditions are more vulnerable to the adverse effects of pollution, we further investigated the cardiotoxic effects of PS-NPs on pathological states induced by isoprenaline. Results showed that PS-NPs induced cardiomyocyte apoptosis, cardiac fibrosis, and myocardial dysfunction in healthy mice and exacerbated cardiac remodeling in pathological states. RNA sequencing revealed that PS-NPs significantly upregulated homeodomain interacting protein kinase 2 (HIPK2) in the heart and activated the P53 and TGF-beta signaling pathways. Pharmacological inhibition of HIPK2 reduced P53 phosphorylation and inhibited the activation of the TGF-β1/Smad3 pathway, which in turn decreased PS-NPs-induced cardiotoxicity. This study elucidated the potential mechanisms underlying PS-NPs-induced cardiotoxicity and underscored the importance of evaluating nanoplastics safety, particularly for individuals with pre-existing heart conditions.
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  • 文章类型: Journal Article
    掌plant疣(PWs)是与人乳头瘤病毒(HPV)相关的常见皮肤病,可影响患者的生活质量。中药微人消瘤方(WRXYF)是一种相对温和有效的治疗方法,在临床上取得了良好的治疗效果,但其机制尚未研究。
    进行了荟萃分析,以确定局部中药治疗PW的潜在优势。临床病例表明,WRXYF是一种有效的治疗PWs的药物。网络药理学用于预测主要生物活性化合物的潜在靶标,丹参酮IIA(TanIIA),在WRXYF。采用高效液相色谱-电喷雾质谱(HPLC/ESI-MS)检测主要成分。然后用定量聚合酶链反应(q-PCR)验证TanIIA对PWs的生物活性,荧光原位杂交(FISH),电子显微镜和蛋白质印迹。
    对10项随机临床试验(RCT)进行了荟萃分析,涉及2260名参与者,表明外用中药可以比常规药物更有效地治疗PWs。网络药理学将TanIIA鉴定为通过HPLC/ESI-MS评估的17种主要化合物的候选试剂,因为其与10个PW靶标稳定结合。HPV2,HPV27和HPV57是PW患者组织和HPV感染的HaCaT细胞中的主要感染菌株。TanIIA处理有效地破坏了病毒颗粒并减少了三种HPV亚型的病毒拷贝数。结果显示TanIIA具有特异性地在G0/G1期停止HPV感染的HaCaT细胞的细胞周期的能力。共有6种细胞周期相关蛋白在TanIIA处理后受到调控,证明了TanIIA在抑制细胞周期中的作用。
    TanIIA,WRXYF中的主要生物活性成分,通过调节p53信号通路使G0/G1期细胞周期停止来增强PWs。
    UNASSIGNED: Palmoplantar warts (PWs) are a usual skin disease associated with human papillomavirus (HPV) that can affect patients\' quality of life. The traditional Chinese medicine (TCM) Weiren Xiaoyou formula (WRXYF) is a relatively gentle and effective therapy that has achieved good therapeutic effects in clinical practice, but its mechanism has not yet been studied.
    UNASSIGNED: A meta-analysis was carried out to identify the potential advantages of topical TCM for PW treatment. Clinical cases suggested that WRXYF was an effective therapeutic agent against PWs. Network pharmacology was utilized to predict potential targets for the main bioactive compound, tanshinone IIA (Tan IIA), in WRXYF. High-performance liquid chromatography with electrospray mass spectrometry (HPLC/ESI-MS) was applied to detect major components. The bioactivity of Tan IIA against PWs was then validated with quantitative polymerase chain reaction (q-PCR), fluorescence in situ hybridization (FISH), electron microscopy and Western blotting.
    UNASSIGNED: A meta-analysis was conducted on 10 randomized clinical trials (RCTs) involving 2260 participants suggested that topical TCM could more effectively treat PWs than conventional medications. Network pharmacology identified Tan IIA as a candidate agent from 17 major compounds assessed by HPLC/ESI-MS because of its stable binding with 10 PW targets. HPV2, HPV27, and HPV57 were the main infectious strains in tissues obtained from PW patients and in HPV-infected HaCaT cells. Tan IIA treatment effectively destroyed viral particles and reduced the viral copy numbers of the three HPV subtypes. The results shown that Tan IIA has the ability to halt the cell cycle of HPV-infected HaCaT cells specifically in the G0/G1 phase. A total of 6 cell cycle-related proteins were regulated after Tan IIA treatment, demonstrating the role of Tan IIA in inhibiting the cell cycle.
    UNASSIGNED: Tan IIA, the primary bioactive constituent in WRXYF, enhances PWs by halting the cell cycle in the G0/G1 phase via modulation of the p53 signaling pathway.
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  • 文章类型: Journal Article
    基于肌酸激酶B(CKB)/p53信号通路,探讨白杨素对人肝癌Huh-7细胞增殖和凋亡的影响及其机制。用1~12μmol·L~(-1)的白花素处理Huh-7细胞进行细胞计数试剂盒-8(CCK-8)检测,分别测定1、3和6μmol·L~(-1)为低,中等,和高浓度的白花精用于后续实验。通过成簇的规则间隔短回文重复序列(CRISPR)/CRISPR相关蛋白(Cas)-9基因编辑技术,在Huh-7细胞中敲除CKB基因。将CKB过表达慢病毒转染到Huh-7细胞中以上调CKB的表达。通过平板克隆实验和流式细胞术检测细胞增殖和凋亡。实时定量PCR(qRT-PCR)检测CKBmRNA的表达。CKB,p53,小鼠双分2同源物(MDM2),B细胞淋巴瘤2(Bcl-2),Bcl-2相关X蛋白(Bax),Westernblot(WB)检测caspase-3蛋白。结果表明,白花皂甙能显著抑制Huh-7细胞的增殖,诱导细胞凋亡。与对照组相比,plumbagin组细胞凋亡水平显著升高,而plumbagin联合凋亡抑制剂组的凋亡水平显着降低。plumbagin显著下调CKB的蛋白表达水平,Bcl-2、MDM2和上调p53、Bax、和caspase-3。敲除CKB基因降低Huh-7细胞的增殖能力,增加了凋亡率,降低Bcl-2和MDM2蛋白的表达水平,并增加p53,Bax的表达水平,和caspase-3蛋白。上调CKB表达后,Huh-7细胞的增殖能力增强,Bcl-2和MDM2蛋白表达水平升高。p53、Bax、和caspase-3降低。此外,plumbagin逆转过表达CKB对Huh-7细胞增殖和凋亡的影响。总之,plumbagin显著抑制Huh-7细胞的增殖能力,其机制可能与抑制CKB表达有关,激活p53信号通路,和调节线粒体相关凋亡蛋白的表达,最终诱导细胞凋亡。
    To investigate the effects of plumbagin on the proliferation and apoptosis of human hepatoma Huh-7 cells and its mechanism based on the creatine kinase B(CKB)/p53 signaling pathway. Huh-7 cells were treated with plumbagin from 1 to 12 μmol·L~(-1) for cell counting kit-8(CCK-8) assay, and 1, 3, and 6 μmol·L~(-1) were determined as low, medium, and high concentrations of plumbagin for subsequent experiments. CKB gene was knocked out in Huh-7 cells by clustered regularly interspaced short palindromic repeats(CRISPR)/CRISPR-associated proteins(Cas)-9 gene editing technology. CKB overexpression lentivirus was transfected into Huh-7 cells to up-regulate the expression of CKB. Cell proliferation and apoptosis were detected by plate cloning assay and flow cytometry. The mRNA expression of CKB was detected by quantitative real-time PCR(qRT-PCR). CKB, p53, mouse double minute 2 homolog(MDM2), B-cell lymphoma 2(Bcl-2), Bcl-2 associated X protein(Bax), and caspase-3 protein were detected by Western blot(WB). The results showed that plumbagin significantly inhibited the proliferation of Huh-7 cells and induced cell apoptosis. Compared with the control group, the apoptosis level was significantly increased in the plumbagin group, while the apoptosis level was significantly decreased in the plumbagin combined with the apoptosis inhibitor group. Plumbagin significantly down-regulated the protein expression levels of CKB, Bcl-2, and MDM2 and up-regulated the protein expression levels of p53, Bax, and caspase-3. Knockdown of the CKB gene decreased the proliferative ability of Huh-7 cells, increased the apoptotic rate, decreased the expression levels of Bcl-2 and MDM2 proteins, and increased the expression levels of p53, Bax, and caspase-3 proteins. After up-regulation of CKB expression, the proliferation ability of Huh-7 cells was enhanced, and the protein expression levels of Bcl-2 and MDM2 were elevated. The protein expression levels of p53, Bax, and caspase-3 were decreased. In addition, plumbagin reversed the effect of overexpression of CKB on the proliferation and apoptosis of Huh-7 cells. In conclusion, plumbagin significantly inhibited the proliferative ability of Huh-7 cells, and the mechanism may be related to the inhibition of CKB expression, activation of the p53 signaling pathway, and regulation of the expression of mitochondrial-associated apoptotic proteins, ultimately inducing cell apoptosis.
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  • 文章类型: Journal Article
    背景:香菇(SAAE)干燥芽的水提取物具有缓解幽门螺杆菌感染的潜力,但具体的分子机制尚未完全阐明。
    目的:本研究旨在探讨SAAE对幽门螺杆菌致病性的潜在机制。
    方法:抑制动力学和抗H。进行幽门螺杆菌粘附能力测定以检查SAAE对幽门螺杆菌生长和粘附能力的影响。通过高速离心从培养上清液中纯化幽门螺杆菌外膜囊泡(OMVs),过滤,和两轮超速离心。然后使用透射电子显微镜(TEM)鉴定它们的特征和蛋白质组成,纳米粒子跟踪分析(NTA),和定性蛋白质组学研究。随后,SAAE对H.pyloriOMV致病性的影响使用Griess试剂分析进行了研究,酶联免疫吸附测定(ELISA),定量蛋白质组学研究,TEM,和蛋白质印迹分析。
    结果:SAAE对幽门螺杆菌的生长和粘附具有抑制作用。分离的幽门螺杆菌OMV显示27-242nm的粒径和-9.67±0.53mV的ζ电位。在OMV中鉴定了总共599种蛋白质。蛋白质组学研究表明,有或没有SAAE的OMV诱导的差异表达蛋白通常富含P53和自噬途径。此外,SAAE抵消了促炎细胞因子产生的增加,并减弱了幽门螺杆菌OMV引起的细胞自噬的诱导。此外,SAAE使幽门螺杆菌OMV引起的P53信号通路下游靶标(AIFM2和IGFBP3)的异常调节正常化。
    结论:SAAE可以抑制幽门螺杆菌的生长和粘附,减少幽门螺杆菌OMV诱导的炎症和自噬,并对抗幽门螺杆菌OMV引起的P53信号通路的异常调节。这些发现可能有助于阐明SAAE降低幽门螺杆菌致病性的机制。
    BACKGROUND: The aqueous extract of the dried buds of Syzygium aromaticum (SAAE) have the potential to alleviate Helicobacter pylori infection, but the specific molecular mechanism has not been fully elucidated.
    OBJECTIVE: This study aimed to investigate the underlying mechanisms of SAAE on H. pylori pathogenicity.
    METHODS: The inhibitory kinetics and anti-H. pylori adhesive capacity assays were conducted to examine the effects of SAAE on the growth and adhesive capability of H. pylori. The H. pylori outer membrane vesicles (OMVs) were purified from the culture supernatant through high-speed centrifugation, filtration, and two rounds of ultracentrifugation. Their characteristics and protein composition were then identified using transmission electron microscopy (TEM), nanoparticle tracking analysis (NTA), and qualitative proteomics study. Subsequently, the effect of SAAE on the pathogenicity of H. pylori OMVs was investigated using the Griess reagent assay, enzyme-linked immunosorbent assay (ELISA), quantitative proteomics study, TEM, and western blotting assay.
    RESULTS: SAAE exhibited inhibitory effects on H. pylori growth and adhesion. The isolated H. pylori OMVs showed particle size of 27-242 nm and Zeta potential of -9.67 ± 0.53 mV. A total of 599 proteins were identified in the OMVs. Proteomics study indicated that the differential expressed proteins induced by OMVs with or without SAAE commonly enriched in P53 and autophagy pathways. Besides, SAAE counteracted the increased production of pro-inflammatory cytokines and attenuated the induction of cell autophagy caused by H. pylori OMVs. Furthermore, SAAE normalized the abnormal regulation of downstream targets (AIFM2 and IGFBP3) in the P53 signaling pathway caused by H. pylori OMVs.
    CONCLUSIONS: SAAE can inhibit the growth and adhesion of H. pylori, reduce the inflammation and autophagy induced by H. pylori OMVs, and combated the abnormal regulation of P53 signaling pathway caused by H. pylori OMVs. These findings may help elucidate the mechanisms through which SAAE reduces the pathogenicity of H. pylori.
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  • 文章类型: Retraction of Publication
    暂无摘要。
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  • 文章类型: Journal Article
    心肌纤维化(MF)是各种心血管疾病的重要病理过程,尤其是心力衰竭。黄芪甲苷(AS-IV),一种来自黄芪的天然化合物,具有有效的心脏保护特性。然而,其抗MF作用的精确分子机制,特别是关于衰老,仍然难以捉摸。因此,这项研究旨在探讨AS-IV治疗ISO诱导的MF小鼠的治疗潜力和潜在的分子机制,采用转录组学,蛋白质组学,在体外,和体内实验。我们使用HE染色评估了AS-IV对ISO诱导的MF的积极作用,Masson染色,ELISA,免疫组织化学染色,经胸超声心动图,透射电子显微镜,和DHE荧光染色。此外,我们通过全面的转录组学和蛋白质组学分析阐明了AS-IV在MF中的调节作用,通过Western印迹和RT-qPCR验证相关分子途径。我们的研究结果表明,AS-IV治疗可显着减轻ISO诱导的心肌损伤和氧化应激,同时抑制SASPs的释放。此外,整合转录组学和蛋白质组学分析显示AS-IV的抗MF机制与调节细胞衰老和p53信号通路有关。这些结果强调了AS-IV不仅通过抑制氧化应激而且通过p53信号通路调节衰老发挥其抗MF作用。
    Myocardial fibrosis (MF) is a pivotal pathological process implicated in various cardiovascular diseases, particularly heart failure. Astragaloside IV (AS-IV), a natural compound derived from Astragalus membranaceus, possesses potent cardioprotective properties. However, the precise molecular mechanisms underlying its anti-MF effects, particularly in relation to senescence, remain elusive. Thus, this study aimed to investigate the therapeutic potential and underlying molecular mechanisms of AS-IV in treating ISO-induced MF in mice, employing transcriptomics, proteomics, in vitro, and in vivo experiments. We assessed the positive effects of AS-IV on ISO-induced MF using HE staining, Masson staining, ELISA, immunohistochemical staining, transthoracic echocardiography, transmission electron microscopy, and DHE fluorescence staining. Additionally, we elucidated the regulatory role of AS-IV in MF through comprehensive transcriptomics and proteomics analyses, complemented by Western blotting and RT-qPCR validation of pertinent molecular pathways. Our findings demonstrated that AS-IV treatment markedly attenuated ISO-induced myocardial injury and oxidative stress, concomitantly inhibiting the release of SASPs. Furthermore, integrated transcriptomics and proteomics analyses revealed that the anti-MF mechanism of AS-IV was associated with regulating cellular senescence and the p53 signaling pathway. These results highlight AS-IV exerts its anti-MF effects not only by inhibiting oxidative stress but also by modulating senescence through the p53 signaling pathway.
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  • 文章类型: Journal Article
    肿瘤遗传异常和免疫失调在多发性骨髓瘤(MM)的进展中至关重要。准确的患者分层对于有效的MM管理至关重要,然而,目前的模型未能全面纳入分子和免疫谱。
    我们检查了MMRFCoMMpass数据库中的776个样本,使用LASSO和CIBERSORT算法进行单变量回归,以鉴定15个与p53相关的基因和6个在MM中具有预后意义的免疫细胞。通过使用bootstrap-multicox方法计算评分来构建p53-TIC(肿瘤浸润免疫细胞)分类器,通过外部(GSE136337)和十倍内部交叉验证进一步验证其预测可靠性和稳健性。
    p53-TIC分类器在预测MM预后方面表现出出色的性能。具体来说,p53low/TIChigh亚组患者的预后最良好,肿瘤突变负荷(TMB)最低.相反,p53high/TIClow亚组的人,预后最差,TMB最高,预测具有最佳的抗PD1和抗CTLA4反应率(40%),这可以通过它们的PD1和CTLA4的较高表达来解释。在总样本中,三年曲线下面积(AUC)为0.80。
    我们的研究强调了对p53相关基因和TIC的综合分析在预测MM患者的预后和帮助临床决策方面的潜力。这一发现强调了理解MM中遗传异常与免疫功能障碍之间复杂相互作用的重要性。对这一领域的进一步研究可能导致更有效的治疗策略的发展。
    UNASSIGNED: Tumor genetic anomalies and immune dysregulation are pivotal in the progression of multiple myeloma (MM). Accurate patient stratification is essential for effective MM management, yet current models fail to comprehensively incorporate both molecular and immune profiles.
    UNASSIGNED: We examined 776 samples from the MMRF CoMMpass database, employing univariate regression with LASSO and CIBERSORT algorithms to identify 15 p53-related genes and six immune cells with prognostic significance in MM. A p53-TIC (tumor-infiltrating immune cells) classifier was constructed by calculating scores using the bootstrap-multicox method, which was further validated externally (GSE136337) and through ten-fold internal cross-validation for its predictive reliability and robustness.
    UNASSIGNED: The p53-TIC classifier demonstrated excellent performance in predicting the prognosis in MM. Specifically, patients in the p53low/TIChigh subgroup had the most favorable prognosis and the lowest tumor mutational burden (TMB). Conversely, those in the p53high/TIClow subgroup, with the least favorable prognosis and the highest TMB, were predicted to have the best anti-PD1 and anti-CTLA4 response rate (40 %), which can be explained by their higher expression of PD1 and CTLA4. The three-year area under the curve (AUC) was 0.80 in the total sample.
    UNASSIGNED: Our study highlights the potential of an integrated analysis of p53-associated genes and TIC in predicting prognosis and aiding clinical decision-making in MM patients. This finding underscores the significance of comprehending the intricate interplay between genetic abnormalities and immune dysfunction in MM. Further research into this area may lead to the development of more effective treatment strategies.
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  • 文章类型: Journal Article
    结直肠癌(CRC)是被诊断的第三大最普遍的癌症,而且死亡率很高.尽管对CRC进行了大量研究,它仍然是一个重大的健康问题。随着CRC进展,无病生存率显著降低,强调有效诊断和治疗方法的紧迫性。CRC的发展是由环境因素引起的,这主要导致信号通路的中断。在这些途径中,无翼/整合(Wnt)信号通路,磷脂酰肌醇3-激酶/蛋白激酶B/哺乳动物雷帕霉素靶蛋白(PI3K/AKT/mTOR)信号通路,丝裂原激活蛋白激酶(MAPK)信号通路,转化生长因子-β(TGF-β)信号通路,和p53信号通路被认为是重要的。这些信号通路也受到非编码RNA(ncRNAs)的调节,包括microRNAs(miRNAs),长链非编码RNA(lncRNA),和环状RNAs(circRNAs)。通过改变其表达水平,它们已成为CRC中基因表达的关键调节剂。这些ncRNAs的表达模式改变与CRC的进展和发展有关。表明它们作为诊断和治疗靶点的潜力。这篇综述概述了CRC发病机制中涉及的五个关键信号通路和ncRNAs的调控,这些通路被研究以确定诊断和治疗策略的有希望的途径。
    Colorectal cancer (CRC) is the third most prevalent cancer to be diagnosed, and it has a substantial mortality rate. Despite numerous studies being conducted on CRC, it remains a significant health concern. The disease-free survival rates notably decrease as CRC progresses, emphasizing the urgency for effective diagnostic and therapeutic approaches. CRC development is caused by environmental factors, which mostly lead to the disruption of signaling pathways. Among these pathways, the Wingless/Integrated (Wnt) signaling pathway, Phosphatidylinositol 3-kinase/protein kinase B/mammalian target of rapamycin (PI3K/AKT/mTOR) signaling pathway, Mitogen-Activated Protein Kinase (MAPK) signaling pathway, Transforming Growth Factor-β (TGF-β) signaling pathway, and p53 signaling pathway are considered to be important. These signaling pathways are also regulated by non-coding RNAs (ncRNAs), including microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and circular RNAs (circRNAs). They have emerged as crucial regulators of gene expression in CRC by changing their expression levels. The altered expression patterns of these ncRNAs have been implicated in CRC progression and development, suggesting their potential as diagnostic and therapeutic targets. This review provides an overview of the five key signaling pathways and regulation of ncRNAs involved in CRC pathogenesis that are studied to identify promising avenues for diagnosis and treatment strategies.
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  • 文章类型: Journal Article
    淋巴瘤和白血病都是血液系统肿瘤,病因复杂,主要用化疗药物治疗。然而,治疗药物会因副作用不同而中断疗效。因此,值得开发一种新的治疗方法,为临床肿瘤治疗提供见解。在这项研究中,我们通过自组装方法开发了一种非塞素纳米粒子(FisetinNPs),并研究了非塞酮NPs抗淋巴瘤和白血病的活性和潜在机制。球形和均匀分布的FisetinNP有效抑制两种肿瘤细胞的增殖,抑制EL4细胞G0/G1期和K562细胞G2/M期,并在体外诱导细胞凋亡。在体内,FisetinNPs表现出优异的肿瘤生长抑制,有效抑制细胞增殖和血管生成,显著诱导细胞凋亡,安全性理想。机械上,非塞素上调基因(Fas,皮德,美洲狮,Apaf1和p21)在p53信号通路中并与N-乙酰转移酶10(NAT10)结合,核糖体蛋白L34(RPL34)和GTP结合蛋白4(GTPBP4)。总的来说,FisetinNPs对淋巴瘤和白血病有很好的治疗效果,这对临床意义非常重要。
    Lymphoma and leukemia are both hematological system tumors with complex etiology, and mainly treated with chemotherapeutic drugs. However, therapeutic drugs can interrupt curative effect due to different side effects. Therefore, it is worthwhile to develop a novel therapeutic for providing insights for clinical tumor treatment. In this study, we developed a fisetin nanoparticles (Fisetin NPs) through a self-assembled method, and investigated the activity and potential mechanism of Fisetin NPs against lymphoma and leukemia. The spherical and uniformly distributed Fisetin NPs effectively inhibited both tumor cells proliferation, arrested EL4 cells G0/G1 phase and K562 cells G2/M phase, and induced apoptosis in vitro. In vivo, Fisetin NPs exhibited excellent tumor growth inhibition, effective inhibition of cell proliferation and angiogenesis, significant induction of apoptosis and ideal safety. Mechanically, fisetin upregulated genes (Fas, Pidd, Puma, Apaf1, and p21) in the p53 signaling pathway and bound to N-acetyltransferase 10 (NAT10), ribosomal protein L34 (RPL34) and GTP binding protein 4 (GTPBP4). Collectively, Fisetin NPs have promising therapeutic effects on lymphoma and leukemia, which are of great significant for clinical implications.
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  • 文章类型: Journal Article
    反向Alu重复序列(IRAlus)在转录组中大量存在,特别是在内含子和3'非翻译区(UTR)。然而,在3个UTR中嵌入IRAlus的生物学意义仍然未知。这里,我们发现3'UTRIRAlus沉默参与必需信号通路的基因。我们利用J2抗体直接捕获和定位转录组中3'UTRIRAlus的双链RNA结构。生物信息学分析揭示了替代性聚腺苷酸化是IRAlus介导的基因调控的主轴。值得注意的是,小鼠双分2(MDM2)的表达,p53的抑制剂,在UTR缩短期间通过排除IRAlus上调,它被用来在肿瘤发生过程中沉默p53。此外,神经祖细胞中的全转录组UTR延长导致与神经退行性疾病相关的基因的全球下调,包括肌萎缩侧索硬化症,通过包含IRAlus。我们的研究建立了3'UTRIRAlus的功能景观及其在人类病理生理学中的作用。
    Inverted Alu repeats (IRAlus) are abundantly found in the transcriptome, especially in introns and 3\' untranslated regions (UTRs). Yet, the biological significance of IRAlus embedded in 3\' UTRs remains largely unknown. Here, we find that 3\' UTR IRAlus silences genes involved in essential signaling pathways. We utilize J2 antibody to directly capture and map the double-stranded RNA structure of 3\' UTR IRAlus in the transcriptome. Bioinformatic analysis reveals alternative polyadenylation as a major axis of IRAlus-mediated gene regulation. Notably, the expression of mouse double minute 2 (MDM2), an inhibitor of p53, is upregulated by the exclusion of IRAlus during UTR shortening, which is exploited to silence p53 during tumorigenesis. Moreover, the transcriptome-wide UTR lengthening in neural progenitor cells results in the global downregulation of genes associated with neurodegenerative diseases, including amyotrophic lateral sclerosis, via IRAlus inclusion. Our study establishes the functional landscape of 3\' UTR IRAlus and its role in human pathophysiology.
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